© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|097200 |
| Gene name | |
| Location | scaffold_06:2409885..2411107 |
| Strand | + |
| Gene length (bp) | 1222 |
| Transcript length (bp) | 1071 |
| Coding sequence length (bp) | 1071 |
| Protein length (aa) | 357 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 3.1E-07 | 180 | 214 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9HEV5|ASD4_NEUCR | GATA type zinc finger protein asd-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=asd-4 PE=1 SV=1 | 180 | 218 | 1.0E-07 |
| sp|Q5A201|GZF3_CANAL | Transcriptional regulator GZF3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GZF3 PE=2 SV=1 | 180 | 236 | 2.0E-06 |
| sp|Q9UHF7|TRPS1_HUMAN | Zinc finger transcription factor Trps1 OS=Homo sapiens GN=TRPS1 PE=1 SV=2 | 176 | 277 | 7.0E-06 |
| sp|Q925H1|TRPS1_MOUSE | Zinc finger transcription factor Trps1 OS=Mus musculus GN=Trps1 PE=1 SV=1 | 176 | 277 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0005488 | binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0080090 | regulation of primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|097200 MATLGWQDETKETKEEAIDPALRDSSMSVNVHPARIHSRYDPQTNQRMPSPPPITTLGHPHSHSHSPAPSDASQD RSSISTPPVRRSPHLYPPPYQHIQQHPAYMPYPTHFDHHHRYDQDPAHQHAYHPPPQFAIPTMHAPPPPHRDPYH PYPVPGSQPVTIVHTDDAATKLSDRVRRRCFNCCTTDTSTWRRSNLSPGKVLCNKCGLFERTHSRPRPEQFPHKR GPLATSTLRGRTPPSNQLPPISPPNANSYYGLQDPRRDQQQSSSQYPPANGSNHNLPALQTWHPNPPSAPPNGAA PTPTDGPATSSPHMPPPPVRKATGDSQPQSRQASSSPHLRAAQNTQEARESGENGA* |
| Coding | >Agabi119p4|097200 ATGGCCACATTGGGCTGGCAAGACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACTCC TCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTACGACCCACAGACCAACCAGCGCATGCCGTCC CCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCACTCGCCCGCGCCGTCGGATGCTTCCCAGGAC CGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCTCTACCCGCCCCCTTACCAGCACATCCAGCAA CACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCACCGCTACGACCAGGACCCCGCTCACCAGCAC GCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGCCCCTCCACCCCCTCACCGCGACCCCTACCAC CCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACACCGACGACGCCGCCACAAAGCTCAGCGACCGC GTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCACCTGGCGCAGGTCCAATCTCAGCCCAGGCAAA GTCTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCGC GGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAAT GCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAAC GGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGCC CCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGAC AGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGAA TCCGGCGAAAATGGGGCATAA |
| Transcript | >Agabi119p4|097200 ATGGCCACATTGGGCTGGCAAGACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACTCC TCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTACGACCCACAGACCAACCAGCGCATGCCGTCC CCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCACTCGCCCGCGCCGTCGGATGCTTCCCAGGAC CGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCTCTACCCGCCCCCTTACCAGCACATCCAGCAA CACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCACCGCTACGACCAGGACCCCGCTCACCAGCAC GCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGCCCCTCCACCCCCTCACCGCGACCCCTACCAC CCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACACCGACGACGCCGCCACAAAGCTCAGCGACCGC GTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCACCTGGCGCAGGTCCAATCTCAGCCCAGGCAAA GTCTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCGC GGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAAT GCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAAC GGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGCC CCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGAC AGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGAA TCCGGCGAAAATGGGGCATAA |
| Gene | >Agabi119p4|097200 ATGGCCACATTGGGCTGGTCAGTTCGTTTATAAACGCTGCGATTCTTGTGCTGACCACCCCCTTTCTGCAGGCAA GACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACGTGAGTACTCGGTTTTTCTTGTTG TCACTGCTGCCCCTGACGCGCTCGCCAGTCCTCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTA CGACCCACAGACCAACCAGCGCATGCCGTCCCCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCA CTCGCCCGCGCCGTCGGATGCTTCCCAGGACCGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCT CTACCCGCCCCCTTACCAGCACATCCAGCAACACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCA CCGCTACGACCAGGACCCCGCTCACCAGCACGCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGC CCCTCCACCCCCTCACCGCGACCCCTACCACCCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACAC CGACGACGCCGCCACAAAGCTCAGCGACCGCGTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCAC CTGGCGCAGGTCCAATCTCAGCCCAGGCAAAGTCGTATGTTTTTTCTTTTCCTTTTAATCTCATGCTCACTCTTC CTAGTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCG CGGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAA TGCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAA CGGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGC CCCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGA CAGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGA ATCCGGCGAAAATGGGGCATAA |