Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|097200
Gene name
Locationscaffold_06:2409885..2411107
Strand+
Gene length (bp)1222
Transcript length (bp)1071
Coding sequence length (bp)1071
Protein length (aa) 357

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00320 GATA GATA zinc finger 3.1E-07 180 214

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9HEV5|ASD4_NEUCR GATA type zinc finger protein asd-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=asd-4 PE=1 SV=1 180 218 1.0E-07
sp|Q5A201|GZF3_CANAL Transcriptional regulator GZF3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=GZF3 PE=2 SV=1 180 236 2.0E-06
sp|Q9UHF7|TRPS1_HUMAN Zinc finger transcription factor Trps1 OS=Homo sapiens GN=TRPS1 PE=1 SV=2 176 277 7.0E-06
sp|Q925H1|TRPS1_MOUSE Zinc finger transcription factor Trps1 OS=Mus musculus GN=Trps1 PE=1 SV=1 176 277 9.0E-06

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0043565 sequence-specific DNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:0031323 regulation of cellular metabolic process No
GO:0003676 nucleic acid binding No
GO:0060255 regulation of macromolecule metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0019222 regulation of metabolic process No
GO:0005488 binding No
GO:0009889 regulation of biosynthetic process No
GO:0065007 biological regulation No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:2001141 regulation of RNA biosynthetic process No
GO:0051252 regulation of RNA metabolic process No
GO:0050794 regulation of cellular process No
GO:1901363 heterocyclic compound binding No
GO:0050789 regulation of biological process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0003677 DNA binding No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0008150 biological_process No
GO:0010468 regulation of gene expression No
GO:0080090 regulation of primary metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 36 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
GATA type zinc finger

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|097200
MATLGWQDETKETKEEAIDPALRDSSMSVNVHPARIHSRYDPQTNQRMPSPPPITTLGHPHSHSHSPAPSDASQD
RSSISTPPVRRSPHLYPPPYQHIQQHPAYMPYPTHFDHHHRYDQDPAHQHAYHPPPQFAIPTMHAPPPPHRDPYH
PYPVPGSQPVTIVHTDDAATKLSDRVRRRCFNCCTTDTSTWRRSNLSPGKVLCNKCGLFERTHSRPRPEQFPHKR
GPLATSTLRGRTPPSNQLPPISPPNANSYYGLQDPRRDQQQSSSQYPPANGSNHNLPALQTWHPNPPSAPPNGAA
PTPTDGPATSSPHMPPPPVRKATGDSQPQSRQASSSPHLRAAQNTQEARESGENGA*
Coding >Agabi119p4|097200
ATGGCCACATTGGGCTGGCAAGACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACTCC
TCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTACGACCCACAGACCAACCAGCGCATGCCGTCC
CCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCACTCGCCCGCGCCGTCGGATGCTTCCCAGGAC
CGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCTCTACCCGCCCCCTTACCAGCACATCCAGCAA
CACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCACCGCTACGACCAGGACCCCGCTCACCAGCAC
GCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGCCCCTCCACCCCCTCACCGCGACCCCTACCAC
CCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACACCGACGACGCCGCCACAAAGCTCAGCGACCGC
GTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCACCTGGCGCAGGTCCAATCTCAGCCCAGGCAAA
GTCTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCGC
GGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAAT
GCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAAC
GGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGCC
CCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGAC
AGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGAA
TCCGGCGAAAATGGGGCATAA
Transcript >Agabi119p4|097200
ATGGCCACATTGGGCTGGCAAGACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACTCC
TCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTACGACCCACAGACCAACCAGCGCATGCCGTCC
CCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCACTCGCCCGCGCCGTCGGATGCTTCCCAGGAC
CGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCTCTACCCGCCCCCTTACCAGCACATCCAGCAA
CACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCACCGCTACGACCAGGACCCCGCTCACCAGCAC
GCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGCCCCTCCACCCCCTCACCGCGACCCCTACCAC
CCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACACCGACGACGCCGCCACAAAGCTCAGCGACCGC
GTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCACCTGGCGCAGGTCCAATCTCAGCCCAGGCAAA
GTCTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCGC
GGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAAT
GCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAAC
GGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGCC
CCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGAC
AGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGAA
TCCGGCGAAAATGGGGCATAA
Gene >Agabi119p4|097200
ATGGCCACATTGGGCTGGTCAGTTCGTTTATAAACGCTGCGATTCTTGTGCTGACCACCCCCTTTCTGCAGGCAA
GACGAGACGAAAGAGACCAAGGAAGAAGCGATTGACCCAGCGCTGAGAGACGTGAGTACTCGGTTTTTCTTGTTG
TCACTGCTGCCCCTGACGCGCTCGCCAGTCCTCCATGTCCGTCAACGTCCACCCCGCCCGCATCCACTCGCGCTA
CGACCCACAGACCAACCAGCGCATGCCGTCCCCACCGCCCATCACGACGCTCGGCCACCCCCACTCGCACTCGCA
CTCGCCCGCGCCGTCGGATGCTTCCCAGGACCGCTCGTCCATCTCCACCCCGCCCGTCCGTCGCTCTCCCCATCT
CTACCCGCCCCCTTACCAGCACATCCAGCAACACCCCGCCTACATGCCCTATCCCACCCACTTTGACCACCACCA
CCGCTACGACCAGGACCCCGCTCACCAGCACGCCTACCACCCTCCCCCCCAGTTTGCTATCCCCACCATGCATGC
CCCTCCACCCCCTCACCGCGACCCCTACCACCCCTACCCCGTCCCTGGCTCACAGCCCGTCACCATCGTCCACAC
CGACGACGCCGCCACAAAGCTCAGCGACCGCGTCCGTCGCAGGTGCTTCAACTGCTGCACCACAGACACCTCCAC
CTGGCGCAGGTCCAATCTCAGCCCAGGCAAAGTCGTATGTTTTTTCTTTTCCTTTTAATCTCATGCTCACTCTTC
CTAGTTGTGCAACAAGTGTGGTCTGTTTGAGCGCACGCACTCGCGTCCCCGCCCAGAGCAGTTCCCTCACAAGCG
CGGCCCTCTCGCCACCTCGACCCTCCGAGGTCGCACCCCGCCCTCCAATCAGCTCCCTCCCATCTCTCCCCCCAA
TGCCAACTCGTACTACGGCCTCCAAGATCCGAGACGCGATCAACAGCAGAGCTCGTCTCAATATCCCCCCGCCAA
CGGCAGCAACCACAATCTCCCCGCCCTCCAGACCTGGCATCCCAACCCCCCTTCGGCTCCTCCCAACGGCGCCGC
CCCTACCCCCACCGACGGCCCTGCCACTAGCTCTCCTCACATGCCTCCTCCCCCCGTCAGGAAAGCCACAGGCGA
CAGCCAGCCCCAAAGCAGGCAGGCCTCTTCCTCTCCTCACCTGAGGGCCGCTCAGAATACTCAGGAAGCCAGGGA
ATCCGGCGAAAATGGGGCATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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