© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|095750 |
| Gene name | |
| Location | scaffold_06:1964823..1967170 |
| Strand | - |
| Gene length (bp) | 2347 |
| Transcript length (bp) | 1869 |
| Coding sequence length (bp) | 1869 |
| Protein length (aa) | 623 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 1.1E-13 | 543 | 576 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40209|GAT2_YEAST | Protein GAT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT2 PE=3 SV=1 | 512 | 578 | 2.0E-11 |
| sp|Q54KX0|GTAN_DICDI | GATA zinc finger domain-containing protein 14 OS=Dictyostelium discoideum GN=gtaN PE=3 SV=1 | 543 | 581 | 7.0E-11 |
| sp|Q59LY1|BRG1_CANAL | Biofilm regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BRG1 PE=1 SV=1 | 543 | 579 | 1.0E-10 |
| sp|Q75JZ1|GTAC_DICDI | GATA zinc finger domain-containing protein 3 OS=Dictyostelium discoideum GN=gtaC PE=3 SV=1 | 540 | 578 | 2.0E-10 |
| sp|Q00858|CGPB_FUSSO | Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1 | 496 | 579 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40209|GAT2_YEAST | Protein GAT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT2 PE=3 SV=1 | 512 | 578 | 2.0E-11 |
| sp|Q54KX0|GTAN_DICDI | GATA zinc finger domain-containing protein 14 OS=Dictyostelium discoideum GN=gtaN PE=3 SV=1 | 543 | 581 | 7.0E-11 |
| sp|Q59LY1|BRG1_CANAL | Biofilm regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BRG1 PE=1 SV=1 | 543 | 579 | 1.0E-10 |
| sp|Q75JZ1|GTAC_DICDI | GATA zinc finger domain-containing protein 3 OS=Dictyostelium discoideum GN=gtaC PE=3 SV=1 | 540 | 578 | 2.0E-10 |
| sp|Q00858|CGPB_FUSSO | Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1 | 496 | 579 | 2.0E-10 |
| sp|B0G188|GTAP_DICDI | GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=3 SV=1 | 542 | 577 | 6.0E-10 |
| sp|Q55C49|GTAG_DICDI | GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=3 SV=1 | 543 | 582 | 1.0E-09 |
| sp|Q54TE3|GTAJ_DICDI | GATA zinc finger domain-containing protein 10 OS=Dictyostelium discoideum GN=gtaJ PE=3 SV=1 | 543 | 583 | 1.0E-09 |
| sp|Q5KSV0|GTAK_DICDI | GATA zinc finger domain-containing protein 11 OS=Dictyostelium discoideum GN=gtaK PE=2 SV=1 | 543 | 578 | 2.0E-09 |
| sp|P69781|GAT12_ARATH | GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1 | 479 | 572 | 3.0E-09 |
| sp|Q54TM6|GTAI_DICDI | GATA zinc finger domain-containing protein 9 OS=Dictyostelium discoideum GN=gtaI PE=3 SV=1 | 543 | 578 | 1.0E-08 |
| sp|O82632|GATA9_ARATH | GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1 | 502 | 572 | 2.0E-08 |
| sp|Q55GK0|GTAE_DICDI | GATA zinc finger domain-containing protein 5 OS=Dictyostelium discoideum GN=gtaE PE=3 SV=1 | 543 | 581 | 2.0E-08 |
| sp|Q9FJ10|GAT16_ARATH | GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1 | 530 | 601 | 2.0E-08 |
| sp|Q54NM5|GTAL_DICDI | GATA zinc finger domain-containing protein 12 OS=Dictyostelium discoideum GN=gtaL PE=3 SV=1 | 533 | 572 | 3.0E-08 |
| sp|Q54HA4|GTAO_DICDI | GATA zinc finger domain-containing protein 15 (Fragment) OS=Dictyostelium discoideum GN=gtaO PE=3 SV=1 | 542 | 582 | 5.0E-08 |
| sp|Q75JZ0|GTAH_DICDI | GATA zinc finger domain-containing protein 8 OS=Dictyostelium discoideum GN=gtaH PE=3 SV=1 | 542 | 578 | 6.0E-08 |
| sp|P78714|WC2_NEUCR | White collar 2 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-2 PE=1 SV=1 | 496 | 573 | 7.0E-08 |
| sp|Q55EQ0|GTAF_DICDI | GATA zinc finger domain-containing protein 6 OS=Dictyostelium discoideum GN=gtaF PE=3 SV=1 | 543 | 583 | 2.0E-07 |
| sp|Q9SV30|GATA8_ARATH | GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1 | 541 | 572 | 3.0E-07 |
| sp|O65515|GATA7_ARATH | GATA transcription factor 7 OS=Arabidopsis thaliana GN=GATA7 PE=2 SV=1 | 511 | 572 | 3.0E-07 |
| sp|Q9FH57|GATA5_ARATH | GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1 | 507 | 572 | 4.0E-07 |
| sp|Q9LIB5|GAT17_ARATH | GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1 | 541 | 591 | 9.0E-07 |
| sp|Q9LT45|GAT29_ARATH | GATA transcription factor 29 OS=Arabidopsis thaliana GN=GATA29 PE=2 SV=1 | 544 | 574 | 9.0E-07 |
| sp|Q8LAU9|GATA1_ARATH | GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2 | 540 | 572 | 2.0E-06 |
| sp|O49743|GATA4_ARATH | GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1 | 524 | 572 | 2.0E-06 |
| sp|O49741|GATA2_ARATH | GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1 | 528 | 572 | 3.0E-06 |
| sp|Q9ZPX0|GAT20_ARATH | GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2 | 543 | 574 | 3.0E-06 |
| sp|Q6QPM2|GAT19_ARATH | GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2 | 543 | 599 | 6.0E-06 |
| sp|Q8H1G0|GAT28_ARATH | GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1 | 545 | 573 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0005488 | binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0080090 | regulation of primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|095750 MSSDGRYMYHHQPPSINNYDYGYPHHQQHQPQHHPPPPPPPHAYDNHPPPSHSQSQHPPHPHSHSQSHSQLGHPP LRAPVPRSNSSSTHSHSPSQPNTSHPPPPPPHQSQHHSHHPPPPHQPPPSHQHQPPHSYYNPPPPHPPPGYPSNS YIPPQAAPPPPTQHSHPQSHHPSHPNHPSHWGNESQWGGQFAYGAPPSSHPPASSGPPDYTPGPSRPTTGQENVA NSTSAGPDHHRGSSGYMPPSQSAQPPQPPPTTIEPRRIDVRNDMSRMDNPRRDVRVDNRMNDRMDTRMDPPRMED RIPPQHTSYHHPPPNVHHPQPSLQHPPPTPVSSAPTPIPISSSSTIAGATTAKNVRGRDSPASHPGPPRPSHPPA HVLPPAGPLPPTHATMTSPPMSAIPPAAVSPGSLDFYKLLDQYRMILDNKEMISNNPNKVPSLDLLEKMIQCATL ASHMFEEAAAGESTTSNYSSLMGANGVPAAASNNAREDTKESVLNGPTTNGSSATATGAPAPAPAPTSSGPPGKK QKTDESNQGQGENHGQTCLGCGATSTPEWRRGPMGPRTLCNACGLVYAKMIKKRVREKYNQNGRSNGQTSQQNVV DDSDDSDDDDDTNNYANDRGNN* |
| Coding | >Agabi119p4|095750 ATGTCGTCCGACGGAAGGTATATGTATCACCACCAACCCCCGAGTATCAATAACTATGACTATGGCTATCCGCAT CATCAACAACATCAGCCCCAACACCACCCTCCTCCGCCTCCGCCACCTCATGCCTACGATAATCACCCCCCTCCT TCGCATTCTCAATCTCAACACCCACCTCACCCTCACTCTCATTCGCAGAGTCATTCGCAATTAGGCCACCCACCT CTACGTGCTCCTGTTCCCCGTTCAAACTCGTCTTCGACTCATTCCCATTCTCCATCTCAACCAAATACATCTCAT CCTCCCCCACCGCCTCCACATCAATCTCAACACCATTCGCACCATCCGCCTCCCCCGCATCAACCACCACCTTCA CATCAACACCAGCCACCTCATTCGTATTATAATCCACCTCCACCTCATCCACCGCCTGGCTATCCCTCTAACTCT TACATTCCGCCACAAGCTGCACCACCGCCCCCAACTCAGCACTCTCATCCTCAGTCTCACCACCCTAGTCACCCC AATCACCCTAGTCATTGGGGAAATGAAAGTCAGTGGGGCGGTCAGTTTGCTTATGGCGCTCCTCCTTCATCACAC CCTCCAGCATCTAGTGGCCCTCCAGATTATACCCCCGGTCCCAGTAGGCCGACGACTGGCCAGGAAAATGTGGCT AACTCTACAAGCGCAGGACCAGATCACCATAGAGGGAGTTCGGGATACATGCCCCCTTCGCAGTCGGCGCAACCT CCTCAGCCTCCACCTACCACGATTGAGCCCAGAAGGATCGATGTCAGGAATGATATGTCACGCATGGATAATCCA AGAAGGGATGTGCGAGTGGATAACAGAATGAATGATCGAATGGATACAAGAATGGATCCTCCGAGAATGGAGGAT CGAATACCCCCCCAGCACACATCGTATCATCATCCTCCACCTAATGTCCACCATCCTCAACCTTCATTACAGCAT CCTCCACCGACGCCCGTTTCATCCGCGCCCACGCCAATACCTATTTCATCATCTTCAACAATTGCGGGTGCAACT ACCGCTAAAAATGTTCGGGGAAGGGATTCGCCGGCTTCACATCCGGGACCTCCCCGTCCTTCTCATCCTCCTGCG CATGTTCTACCTCCGGCGGGACCGCTGCCACCCACACATGCTACGATGACTAGCCCTCCCATGTCTGCTATTCCT CCTGCTGCCGTTTCGCCTGGAAGCCTCGATTTTTACAAGCTTCTTGATCAATACCGCATGATTCTAGACAATAAG GAAATGATCAGCAACAATCCAAACAAAGTTCCTTCTTTGGACTTATTGGAAAAGATGATTCAATGCGCGACCCTG GCTTCGCATATGTTTGAGGAAGCTGCCGCCGGTGAAAGTACAACGTCGAATTATTCATCTCTCATGGGTGCGAAT GGTGTCCCAGCCGCTGCATCGAACAACGCGAGAGAGGACACGAAAGAGTCTGTACTTAATGGACCTACGACAAAT GGCTCTAGTGCGACCGCTACTGGTGCTCCCGCACCCGCACCCGCACCAACTTCATCAGGGCCCCCTGGTAAAAAA CAGAAAACAGATGAAAGTAATCAGGGGCAAGGAGAAAACCACGGTCAGACGTGTTTGGGTTGTGGTGCCACTTCG ACGCCCGAGTGGAGGCGTGGGCCCATGGGCCCCCGAACGTTGTGCAACGCGTGCGGGCTGGTTTATGCTAAAATG ATAAAAAAACGCGTGCGAGAAAAATATAATCAAAATGGACGATCCAACGGTCAAACCTCTCAACAAAATGTCGTT GACGATTCGGATGATAGTGATGACGATGATGATACTAATAACTATGCTAACGATAGGGGTAACAACTGA |
| Transcript | >Agabi119p4|095750 ATGTCGTCCGACGGAAGGTATATGTATCACCACCAACCCCCGAGTATCAATAACTATGACTATGGCTATCCGCAT CATCAACAACATCAGCCCCAACACCACCCTCCTCCGCCTCCGCCACCTCATGCCTACGATAATCACCCCCCTCCT TCGCATTCTCAATCTCAACACCCACCTCACCCTCACTCTCATTCGCAGAGTCATTCGCAATTAGGCCACCCACCT CTACGTGCTCCTGTTCCCCGTTCAAACTCGTCTTCGACTCATTCCCATTCTCCATCTCAACCAAATACATCTCAT CCTCCCCCACCGCCTCCACATCAATCTCAACACCATTCGCACCATCCGCCTCCCCCGCATCAACCACCACCTTCA CATCAACACCAGCCACCTCATTCGTATTATAATCCACCTCCACCTCATCCACCGCCTGGCTATCCCTCTAACTCT TACATTCCGCCACAAGCTGCACCACCGCCCCCAACTCAGCACTCTCATCCTCAGTCTCACCACCCTAGTCACCCC AATCACCCTAGTCATTGGGGAAATGAAAGTCAGTGGGGCGGTCAGTTTGCTTATGGCGCTCCTCCTTCATCACAC CCTCCAGCATCTAGTGGCCCTCCAGATTATACCCCCGGTCCCAGTAGGCCGACGACTGGCCAGGAAAATGTGGCT AACTCTACAAGCGCAGGACCAGATCACCATAGAGGGAGTTCGGGATACATGCCCCCTTCGCAGTCGGCGCAACCT CCTCAGCCTCCACCTACCACGATTGAGCCCAGAAGGATCGATGTCAGGAATGATATGTCACGCATGGATAATCCA AGAAGGGATGTGCGAGTGGATAACAGAATGAATGATCGAATGGATACAAGAATGGATCCTCCGAGAATGGAGGAT CGAATACCCCCCCAGCACACATCGTATCATCATCCTCCACCTAATGTCCACCATCCTCAACCTTCATTACAGCAT CCTCCACCGACGCCCGTTTCATCCGCGCCCACGCCAATACCTATTTCATCATCTTCAACAATTGCGGGTGCAACT ACCGCTAAAAATGTTCGGGGAAGGGATTCGCCGGCTTCACATCCGGGACCTCCCCGTCCTTCTCATCCTCCTGCG CATGTTCTACCTCCGGCGGGACCGCTGCCACCCACACATGCTACGATGACTAGCCCTCCCATGTCTGCTATTCCT CCTGCTGCCGTTTCGCCTGGAAGCCTCGATTTTTACAAGCTTCTTGATCAATACCGCATGATTCTAGACAATAAG GAAATGATCAGCAACAATCCAAACAAAGTTCCTTCTTTGGACTTATTGGAAAAGATGATTCAATGCGCGACCCTG GCTTCGCATATGTTTGAGGAAGCTGCCGCCGGTGAAAGTACAACGTCGAATTATTCATCTCTCATGGGTGCGAAT GGTGTCCCAGCCGCTGCATCGAACAACGCGAGAGAGGACACGAAAGAGTCTGTACTTAATGGACCTACGACAAAT GGCTCTAGTGCGACCGCTACTGGTGCTCCCGCACCCGCACCCGCACCAACTTCATCAGGGCCCCCTGGTAAAAAA CAGAAAACAGATGAAAGTAATCAGGGGCAAGGAGAAAACCACGGTCAGACGTGTTTGGGTTGTGGTGCCACTTCG ACGCCCGAGTGGAGGCGTGGGCCCATGGGCCCCCGAACGTTGTGCAACGCGTGCGGGCTGGTTTATGCTAAAATG ATAAAAAAACGCGTGCGAGAAAAATATAATCAAAATGGACGATCCAACGGTCAAACCTCTCAACAAAATGTCGTT GACGATTCGGATGATAGTGATGACGATGATGATACTAATAACTATGCTAACGATAGGGGTAACAACTGA |
| Gene | >Agabi119p4|095750 ATGTCGTCCGACGGAAGGTATATGTATCACCACCAACCCCCGAGTATCAATAACTATGACTATGGCTATCCGCAT CATCAACAACATCAGCCCCAACACCACCCTCCTCCGCCTCCGCCACCTCATGCCTACGATAATCACCCCCCTCCT TCGCATTCTCAATCTCAACACCCACCTCACCCTCACTCTCATTCGCAGAGTCATTCGCAATTAGGCCACCCACCT CTACGTGCTCCTGTTCCCCGTTCAAACTCGTCTTCGACTCATTCCCATTCTCCATCTCAACCAAATACATCTCAT CCTCCCCCACCGCCTCCACATCAATCTCAACACCATTCGCACCATCCGCCTCCCCCGCATCAACCACCACCTTCA CATCAACACCAGCCACCTCATTCGTATTATAATCCACCTCCACCTCATCCACCGCCTGGCTATCCCTCTAACTCT TACATTCCGCCACAAGCTGCACCACCGCCCCCAACTCAGCACTCTCATCCTCAGTCTCACCACCCTAGTCACCCC AATCACCCTAGTCATTGGGGAAATGAAAGTCAGTGGGGCGGTCAGTTTGCTTATGGCGCTCCTCCTTCATCACAC CCTCCAGCATCTAGTGGCCCTCCAGATTATACCCCCGGTCCCAGTAGGCCGACGACTGGCCAGGAAAATGTGGCT AACTCTACAAGCGCAGGACCAGATCACCATAGAGGGAGTTCGGGATACATGCCCCCTTCGCAGTCGGCGCAACCT CCTCAGCCTCCACCTACCACGATTGAGCCCAGAAGGATCGATGTCAGGAATGATATGTCACGCATGGATAATCCA AGAAGGGATGTGCGAGTGGATAACAGAATGAATGATCGAATGGATACAAGAATGGATCCTCCGAGAATGGAGGAT CGAATACCCCCCCAGCACACATCGTATCATCATCCTCCACCTAATGTCCACCATCCTCAACCTTCATTACAGCAT CCTCCACCGACGCCCGTTTCATCCGCGCCCACGCCAATACCTATTTCATCATCTTCAACAATTGCGGGTGCAACT ACCGCTAAAAATGTTCGGGGAAGGGATTCGCCGGCTTCACATCCGGGACCTCCCCGTCCTTCTCATCCTCCTGCG CATGTTCTACCTCCGGCGGGACCGCTGCCACCCACACATGCTACGATGACTAGCCCTCCCATGTCTGCTATTCCT CCTGCTGCCGTTTCGCCTGGAAGCCTCGATTTTTACAAGGTGCGTGTTCTATACTCAATTTGTATATGGACGTGT GCCAATTTAGGTCGACTGATTGTTCTCACATTGATGCTACTATGACGTTTCGGATGCTGGGATTCTTTGATGTGA ACCAAATGGATACTCGCTTGATGGGGATTTATTGGAATGCTTGGTGTCTGGTGATTGGTTGCGGTCTATGTCATG CTTGGCTGACGCTCTTTTACGCTCTCCCACATGATGGATACGTCCGGAAACTTTATTCGACTCCGCGGACCGGTC CTCATCTCATTGGTGCAAATTGCTTCCCCCAACGCAGCTTCTTGATCAATACCGCATGATTCTAGACAATAAGGA AATGATCAGCAACAATCCAAACAAAGTTCCTTCTTTGGACTTATTGGAAAAGATGATTCAATGCGCGACCCTGGC TTCGCATATGTTTGAGGAAGCTGCCGCCGGTGAAAGTACAACGTCGAATTATTCATCTCTCATGGGTGCGAATGG TGTCCCAGCCGCTGCATCGAACAACGCGAGAGAGGACACGAAAGAGTCTGTACTTAATGGACCTACGACAAATGG CTCTAGTGCGACCGCTACTGGTGCTCCCGCACCCGCACCCGCACCAACTTCATCAGGGCCCCCTGGTAAAAAACA GGTATGACCAACAAACTGGTTATTTTTGACCCAATAATGACTCAATTACCTTTTCTGTTAGAAAACAGATGAAAG TAATCAGGGGCAAGGAGAAAACCACGGTCAGACGTGTTTGGGTTGTGGTGCCACTTCGACGCCCGAGTGGAGGCG TGGGCCCATGGGTAAGAAACCTAGCTCCCCCTTGAAGATTTTTATATATTTATATATTTTGACTGTCATTCTGCA GGCCCCCGAACGTTGTGCAACGCGTGCGGGCTGGTTTATGCTAAAATGGTGCGTAGCGGAATGTTTACGCTCATA TCCTGGCTTTGATATTTGTGATTTATAGATAAAAAAACGCGTGCGAGAAAAATATAATCAAAATGGACGATCCAA CGGTCAAACCTCTCAACAAAATGTCGTTGACGATTCGGATGATAGTGATGACGATGATGATACTAATAACTATGC TAACGATAGGGGTAACAACTGA |