Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|093840
Gene name
Locationscaffold_06:1428689..1430208
Strand-
Gene length (bp)1519
Transcript length (bp)1230
Coding sequence length (bp)1230
Protein length (aa) 410

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.2E-07 82 128
PF13920 zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 7.2E-07 79 132
PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 2.4E-05 44 64
PF13639 zf-RING_2 Ring finger domain 2.9E-06 82 129

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes GN=mkrn1 PE=2 SV=1 16 196 8.0E-25
sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon nigroviridis GN=mkrn1 PE=3 SV=1 16 196 7.0E-24
sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens GN=MKRN4P PE=5 SV=1 16 196 9.0E-24
sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=1 SV=1 4 196 3.0E-23
sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1 16 196 4.0E-23
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Swissprot ID Swissprot Description Start End E-value
sp|Q5NU14|MKRN1_TAKRU Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes GN=mkrn1 PE=2 SV=1 16 196 8.0E-25
sp|Q4SRI6|MKRN1_TETNG Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon nigroviridis GN=mkrn1 PE=3 SV=1 16 196 7.0E-24
sp|Q13434|MKRN4_HUMAN Putative E3 ubiquitin-protein ligase makorin-4 OS=Homo sapiens GN=MKRN4P PE=5 SV=1 16 196 9.0E-24
sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=1 SV=1 4 196 3.0E-23
sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1 PE=2 SV=1 16 196 4.0E-23
sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1 SV=3 16 196 7.0E-23
sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis GN=mkrn1 PE=2 SV=1 16 196 1.0E-22
sp|Q4VBT5|MKRN1_DANRE Probable E3 ubiquitin-protein ligase makorin-1 OS=Danio rerio GN=mkrn1 PE=2 SV=1 16 196 4.0E-22
sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1 15 191 4.0E-22
sp|Q9ERV1|MKRN2_MOUSE Probable E3 ubiquitin-protein ligase makorin-2 OS=Mus musculus GN=Mkrn2 PE=1 SV=2 16 196 9.0E-22
sp|Q8JFF3|MKRN1_SERQU Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata GN=mkrn1 PE=2 SV=1 16 196 9.0E-22
sp|Q5NU13|MKRN2_TAKRU Probable E3 ubiquitin-protein ligase makorin-2 OS=Takifugu rubripes GN=mkrn2 PE=2 SV=1 1 197 3.0E-21
sp|Q6GLD9|MKRN2_XENTR Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus tropicalis GN=mkrn2 PE=2 SV=1 9 197 4.0E-21
sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens GN=MKRN2 PE=1 SV=2 16 196 5.0E-21
sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola quinqueradiata GN=mkrn2 PE=2 SV=1 4 197 2.0E-20
sp|B0F0H3|MKRN2_XENLA Probable E3 ubiquitin-protein ligase makorin-2 OS=Xenopus laevis GN=mkrn2 PE=2 SV=2 9 197 3.0E-19
sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio GN=mkrn2 PE=2 SV=2 12 196 2.0E-18
sp|E0X9N4|C3H69_ARATH Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1 46 196 2.0E-18
sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica GN=MKRN PE=2 SV=1 75 196 5.0E-18
sp|Q60764|MKRN3_MOUSE Probable E3 ubiquitin-protein ligase makorin-3 OS=Mus musculus GN=Mkrn3 PE=2 SV=2 13 196 5.0E-17
sp|Q6IDS6|C3H35_ARATH E3 ubiquitin-protein ligase makorin OS=Arabidopsis thaliana GN=MKRN PE=2 SV=1 46 196 6.0E-17
sp|P0C775|P28_VACC8 E3 ubiquitin-protein ligase p28-like OS=Vaccinia virus (strain LC16m8) GN=p28 PE=3 SV=1 72 143 8.0E-08
sp|Q49PZ0|P28_VACC0 E3 ubiquitin ligase p28-like OS=Vaccinia virus (strain LC16m0) GN=p28 PE=3 SV=1 72 143 8.0E-08
sp|P87607|P28_CWPXG E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain GRI-90 / Grishak) GN=p28 PE=3 SV=1 72 143 1.0E-07
sp|Q8V571|P28_MONPV E3 ubiquitin-protein ligase p28-like OS=Monkeypox virus GN=p28 PE=3 SV=1 72 143 1.0E-07
sp|Q85318|P28_ECTVM E3 ubiquitin-protein ligase p28 OS=Ectromelia virus (strain Moscow) GN=p28 PE=3 SV=1 72 143 1.0E-07
sp|Q8QN38|P28_CWPXB E3 ubiquitin-protein ligase p28-like OS=Cowpox virus (strain Brighton Red) GN=p28 PE=3 SV=1 75 143 1.0E-07
sp|Q76R05|P28_VAR67 E3 ubiquitin-protein ligase p28-like OS=Variola virus (isolate Human/India/Ind3/1967) GN=p28 PE=3 SV=1 77 143 3.0E-07
sp|Q805K3|P28B_VACCW Zinc finger-containing protein P28b OS=Vaccinia virus (strain Western Reserve) GN=VACWR012 PE=3 SV=1 92 143 4.0E-06
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GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|093840
MARPSTSKPRGVCRYYASQHGCFAGAACKFLHPDSSLTPYDQSKRCKFYAQGFCRRGDQCWFKHTVDVPSADDDR
DSQNDPCSICFEMPVTYGLLSGCSHIFCITCIRQWRDQKGAAEQITLKRCPMCREPSKFITPSSRFYKHGHPEKE
RITQAYKESMGRVSCRYFQRSLQRDENHPICPFGKDCFYQHLKRDGTPFIFDHGADVCMRRYHNSFPQPSTRLDY
DVAHFFPSEWVPLTVNVLREAMETLESAVSASSETVVRTLNVVRLLVNRDLNNNNTEQVENPSNEMQDDHTTISD
HSDEVDPESDSDDEISQLGRYIRSTRYDEADNEDERVEEETPDNDDDDPAAIEEVDSGRVTNPPFLTDGRGRVVW
SGNSNNGDVVDDDARPGEGRDMTECSGRSKNNNV*
Coding >Agabi119p4|093840
ATGGCCCGCCCGTCCACTTCCAAGCCCCGCGGCGTCTGCAGGTACTACGCTTCTCAGCACGGCTGCTTTGCGGGT
GCTGCATGCAAGTTTCTTCACCCAGACTCCTCTCTCACCCCCTACGACCAGTCCAAACGCTGCAAGTTCTACGCA
CAGGGTTTCTGCCGCCGCGGCGACCAGTGCTGGTTCAAACACACCGTCGATGTTCCCTCGGCTGATGACGATCGA
GATTCACAGAACGACCCATGCTCCATCTGCTTCGAGATGCCCGTCACCTATGGTCTGCTATCTGGCTGTAGCCAC
ATCTTCTGCATCACGTGCATCCGCCAATGGCGAGACCAGAAAGGCGCCGCCGAGCAAATCACCCTCAAACGCTGT
CCAATGTGCAGAGAACCAAGCAAATTCATAACCCCCTCTTCCCGCTTCTACAAACATGGCCATCCAGAGAAGGAA
CGCATCACACAGGCCTACAAAGAAAGCATGGGCCGAGTTTCCTGTCGCTACTTCCAACGCTCTCTACAAAGAGAC
GAGAACCATCCTATCTGTCCCTTTGGAAAGGACTGCTTCTACCAACATCTCAAGAGAGACGGCACTCCCTTTATT
TTTGACCATGGTGCAGATGTGTGCATGCGTCGCTATCACAACTCCTTTCCGCAGCCGTCAACTCGATTGGATTAC
GATGTTGCCCATTTTTTTCCGTCTGAATGGGTCCCTCTGACCGTCAACGTCCTCCGAGAGGCCATGGAAACCCTG
GAATCCGCCGTCTCCGCATCCAGCGAAACAGTAGTCCGCACCCTGAATGTAGTCCGGTTACTCGTCAATCGTGAT
CTAAATAACAACAATACAGAGCAGGTGGAGAATCCTTCGAATGAGATGCAAGACGACCACACGACGATCTCTGAC
CACTCCGATGAAGTCGACCCTGAAAGCGACTCTGATGACGAAATAAGTCAACTTGGGAGATACATCAGGAGTACG
AGATACGACGAAGCGGACAATGAAGACGAGCGCGTGGAGGAGGAAACTCCCGACAATGACGATGATGATCCTGCA
GCAATCGAAGAGGTGGACAGCGGAAGAGTCACCAATCCACCGTTTCTAACGGATGGACGGGGACGAGTTGTTTGG
AGCGGCAATAGCAACAACGGCGACGTCGTCGATGACGATGCCCGGCCAGGCGAGGGCCGGGATATGACAGAATGC
TCCGGAAGGAGTAAGAACAATAATGTATAA
Transcript >Agabi119p4|093840
ATGGCCCGCCCGTCCACTTCCAAGCCCCGCGGCGTCTGCAGGTACTACGCTTCTCAGCACGGCTGCTTTGCGGGT
GCTGCATGCAAGTTTCTTCACCCAGACTCCTCTCTCACCCCCTACGACCAGTCCAAACGCTGCAAGTTCTACGCA
CAGGGTTTCTGCCGCCGCGGCGACCAGTGCTGGTTCAAACACACCGTCGATGTTCCCTCGGCTGATGACGATCGA
GATTCACAGAACGACCCATGCTCCATCTGCTTCGAGATGCCCGTCACCTATGGTCTGCTATCTGGCTGTAGCCAC
ATCTTCTGCATCACGTGCATCCGCCAATGGCGAGACCAGAAAGGCGCCGCCGAGCAAATCACCCTCAAACGCTGT
CCAATGTGCAGAGAACCAAGCAAATTCATAACCCCCTCTTCCCGCTTCTACAAACATGGCCATCCAGAGAAGGAA
CGCATCACACAGGCCTACAAAGAAAGCATGGGCCGAGTTTCCTGTCGCTACTTCCAACGCTCTCTACAAAGAGAC
GAGAACCATCCTATCTGTCCCTTTGGAAAGGACTGCTTCTACCAACATCTCAAGAGAGACGGCACTCCCTTTATT
TTTGACCATGGTGCAGATGTGTGCATGCGTCGCTATCACAACTCCTTTCCGCAGCCGTCAACTCGATTGGATTAC
GATGTTGCCCATTTTTTTCCGTCTGAATGGGTCCCTCTGACCGTCAACGTCCTCCGAGAGGCCATGGAAACCCTG
GAATCCGCCGTCTCCGCATCCAGCGAAACAGTAGTCCGCACCCTGAATGTAGTCCGGTTACTCGTCAATCGTGAT
CTAAATAACAACAATACAGAGCAGGTGGAGAATCCTTCGAATGAGATGCAAGACGACCACACGACGATCTCTGAC
CACTCCGATGAAGTCGACCCTGAAAGCGACTCTGATGACGAAATAAGTCAACTTGGGAGATACATCAGGAGTACG
AGATACGACGAAGCGGACAATGAAGACGAGCGCGTGGAGGAGGAAACTCCCGACAATGACGATGATGATCCTGCA
GCAATCGAAGAGGTGGACAGCGGAAGAGTCACCAATCCACCGTTTCTAACGGATGGACGGGGACGAGTTGTTTGG
AGCGGCAATAGCAACAACGGCGACGTCGTCGATGACGATGCCCGGCCAGGCGAGGGCCGGGATATGACAGAATGC
TCCGGAAGGAGTAAGAACAATAATGTATAA
Gene >Agabi119p4|093840
ATGGCCCGCCCGTCCACTTCCAAGCCCCGCGGCGTCTGCAGGTACTACGCTTCTCAGCACGGCTGCTTTGCGGGT
GCTGCATGCAAGTTTCTTCACCCAGACTCCTCTCTCACCCCCTACGACCAGTCCAAACGCTGCAAGTTCTACGCA
CAGGGTCGGTCTTGCTCTCTTTCCTAATCATCTACTCACATTTCTAACAGGTTTCTGCCGCCGCGGCGACCAGTG
CTGGTTCAAACACACCGTCGATGTTCCCTCGGCTGATGACGATCGAGATTCACAGAACGACCCATGCTCCATCTG
CTTCGAGATGCCCGTCACCTATGGTCTGCTATGTACGCATCTTCCCCCATGCTTGCCCAATTTCTCATCTCCTCC
CAGCTGGCTGTAGCCACATCTTCTGCATCACGGTGAGACTGGGCATCACAAAACAAGACCATCTTATCTAAATGT
CTCTTAGTGCATCCGCCAATGGCGAGACCAGAAAGGCGCCGCCGAGCAAATCACCCTCAAACGCTGTCCAATGTG
CAGAGAACCAAGCAAATTCATAACCCCCTCTTCCCGCTTCTACAAACATGGCCATCCAGAGAAGGAACGCATCAC
ACAGGCCTACAAAGAAAGCATGGGCCGAGTTTCCTGTCGGTCAGTCTCACACTCTCCCCCATCTTCGCCCTCGTT
AACGACCTATTCAGCTACTTCCAACGCTCTCTACAAAGAGACGAGAACCATCCTATCTGTCCCTTTGGAAAGGAC
TGCTTCTACCAACATCTCAAGAGAGACGGCACTCCCTTTATTTTTGACCATGGTGCAGATGTGTGCATGCGTGTA
CGTATCCTGTTCTACTCTCGAGTCTACTCATTAACACCCGAGCAGCGCTATCACAACTCCTTTCCGCAGCCGTCA
ACTCGATTGGATTACGATGTTGCCCATTTTTTTCCGTCTGAATGGGTCCCTCTGACCGTCAACGTCCTCCGAGAG
GCCATGGAAACCCTGGAATCCGCCGTCTCCGCATCCAGCGAAACAGTAGTCCGCACCCTGAATGTAGTCCGGTTA
CTCGTCAATCGTGATCTAAATAACAACAATACAGAGCAGGCAAGTGTCAAATGTACTCGGTCTTTCGTCTCTTCT
AATCCCTCCCAAGGTGGAGAATCCTTCGAATGAGATGCAAGACGACCACACGACGATCTCTGACCACTCCGATGA
AGTCGACCCTGAAAGCGACTCTGATGACGAAATAAGTCAACTTGGGAGATACATCAGGAGTACGAGATACGACGA
AGCGGACAATGAAGACGAGCGCGTGGAGGAGGAAACTCCCGACAATGACGATGATGATCCTGCAGCAATCGAAGA
GGTGGACAGCGGAAGAGTCACCAATCCACCGTTTCTAACGGATGGACGGGGACGAGTTGTTTGGAGCGGCAATAG
CAACAACGGCGACGTCGTCGATGACGATGCCCGGCCAGGCGAGGGCCGGGATATGACAGAATGCTCCGGAAGGAG
TAAGAACAATAATGTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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