© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Agabi119p4|092940 |
| Gene name | |
| Location | scaffold_06:1212731..1214607 |
| Strand | + |
| Gene length (bp) | 1876 |
| Transcript length (bp) | 1230 |
| Coding sequence length (bp) | 1230 |
| Protein length (aa) | 410 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06027 | SLC35F | Solute carrier family 35 | 7.6E-100 | 57 | 351 |
| PF08627 | CRT-like | CRT-like, chloroquine-resistance transporter-like | 2.3E-08 | 83 | 202 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59785|YCN8_SCHPO | Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1 | 7 | 401 | 7.0E-95 |
| sp|Q7TML3|S35F2_MOUSE | Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=1 SV=2 | 27 | 371 | 9.0E-59 |
| sp|Q8IXU6|S35F2_HUMAN | Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1 | 23 | 386 | 1.0E-58 |
| sp|Q5T1Q4|S35F1_HUMAN | Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2 | 50 | 390 | 4.0E-58 |
| sp|Q8BGK5|S35F1_MOUSE | Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=1 SV=1 | 47 | 390 | 3.0E-57 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O59785|YCN8_SCHPO | Uncharacterized solute carrier family 35 member C320.08 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC320.08 PE=1 SV=1 | 7 | 401 | 7.0E-95 |
| sp|Q7TML3|S35F2_MOUSE | Solute carrier family 35 member F2 OS=Mus musculus GN=Slc35f2 PE=1 SV=2 | 27 | 371 | 9.0E-59 |
| sp|Q8IXU6|S35F2_HUMAN | Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1 | 23 | 386 | 1.0E-58 |
| sp|Q5T1Q4|S35F1_HUMAN | Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2 | 50 | 390 | 4.0E-58 |
| sp|Q8BGK5|S35F1_MOUSE | Solute carrier family 35 member F1 OS=Mus musculus GN=Slc35f1 PE=1 SV=1 | 47 | 390 | 3.0E-57 |
| sp|Q0V9U2|S35F2_XENTR | Solute carrier family 35 member F2 OS=Xenopus tropicalis GN=slc35f2 PE=2 SV=2 | 26 | 390 | 5.0E-56 |
| sp|Q550A6|CRTP2_DICDI | Crt homolog 2 OS=Dictyostelium discoideum GN=crtp2 PE=3 SV=1 | 77 | 222 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0006810 | transport | No |
| GO:0051179 | localization | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051234 | establishment of localization | No |
| GO:0008150 | biological_process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:0009987 | cellular process | No |
| GO:0005215 | transporter activity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 68 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 60 | 82 | 22 |
| 2 | 97 | 117 | 20 |
| 3 | 154 | 176 | 22 |
| 4 | 182 | 204 | 22 |
| 5 | 244 | 266 | 22 |
| 6 | 276 | 298 | 22 |
| 7 | 310 | 329 | 19 |
| 8 | 333 | 355 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|092940 MADTTPKPDDTKDDGRSITPHSLPSPQPQSPARPPIEYTSFSAFATSFGRRWKSIWTKRFILSLLAGQVLSLCIT CTNVTTTELVSRGWTLSTTQGFFLYFALFAVYTPYTIYQYGFKGWMRVILRDGWKYIILAACDVEGNFLVVRAYQ YTDLLSCMLLDAWAIPACMFFSWIYLRPRYHWTQILGVLICIGGLGLLVVSDFVTDKNYPALARGKGDGFMIAGA TLYGFTNATEEFFVRKRPLYEVVGQLGMWGFIINGIQASGLESKSMKQVPWNAGIIGLLMAYTAALFILYTIAPM LYRLASSTYYNLSLLSSDFWGLLFGLFLYHYHPYWLYFVAFVVILGGLITYFWYSTPEEQAGSAQQVQAPPYVNQ RGRSVQQDPEQPAVNDLVDPLDSNKLIRDDSRGQ* |
| Coding | >Agabi119p4|092940 ATGGCGGACACGACCCCCAAGCCGGATGATACCAAAGACGACGGACGCAGCATTACACCCCACTCTTTGCCTTCC CCTCAACCCCAAAGTCCCGCTCGACCCCCAATCGAATATACTTCCTTCTCTGCTTTCGCAACCAGCTTTGGTCGC AGGTGGAAAAGCATATGGACCAAACGATTCATCTTATCCCTGTTGGCGGGACAGGTCCTTTCCCTTTGTATCACA TGTACAAACGTCACGACGACTGAGCTTGTCAGTCGAGGGTGGACGCTCTCGACGACCCAAGGATTTTTCTTATAC TTCGCGCTCTTTGCTGTCTACACGCCATACACGATCTATCAGTATGGATTCAAAGGATGGATGAGGGTGATTTTA CGAGATGGTTGGAAATATATTATTTTGGCTGCCTGTGATGTGGAAGGCAATTTTCTTGTTGTCAGGGCCTATCAA TACACGGATTTGCTTTCGTGTATGTTGCTGGATGCGTGGGCTATACCGGCTTGTATGTTCTTCTCCTGGATATAC CTCCGCCCTCGGTATCATTGGACTCAGATTCTGGGTGTTTTGATTTGCATCGGAGGACTTGGGCTTCTCGTTGTG TCCGATTTCGTAACTGACAAAAACTATCCGGCGCTTGCCAGAGGAAAGGGAGATGGATTCATGATCGCCGGTGCT ACACTCTACGGCTTCACCAATGCGACCGAAGAATTTTTCGTAAGGAAGCGCCCTTTGTACGAAGTTGTTGGGCAG CTCGGCATGTGGGGGTTCATCATAAATGGAATCCAAGCATCCGGTTTGGAGTCGAAGAGTATGAAGCAAGTACCT TGGAATGCTGGTATTATTGGCTTACTTATGGCCTACACCGCTGCATTGTTCATCCTCTATACCATTGCTCCGATG CTATATCGGTTGGCTTCTTCTACATACTATAACTTGAGCTTGCTTTCGAGTGATTTCTGGGGTCTGCTTTTTGGA TTATTCCTCTATCACTACCACCCATACTGGCTATACTTTGTCGCATTTGTTGTCATCCTCGGTGGCTTGATCACC TACTTTTGGTATTCTACTCCGGAAGAGCAGGCAGGAAGTGCGCAGCAGGTTCAAGCGCCTCCTTATGTCAATCAG CGTGGCCGATCCGTTCAACAAGATCCAGAACAACCTGCGGTCAACGATTTGGTTGATCCACTGGACTCTAACAAA TTGATACGTGACGATAGCCGAGGGCAGTAG |
| Transcript | >Agabi119p4|092940 ATGGCGGACACGACCCCCAAGCCGGATGATACCAAAGACGACGGACGCAGCATTACACCCCACTCTTTGCCTTCC CCTCAACCCCAAAGTCCCGCTCGACCCCCAATCGAATATACTTCCTTCTCTGCTTTCGCAACCAGCTTTGGTCGC AGGTGGAAAAGCATATGGACCAAACGATTCATCTTATCCCTGTTGGCGGGACAGGTCCTTTCCCTTTGTATCACA TGTACAAACGTCACGACGACTGAGCTTGTCAGTCGAGGGTGGACGCTCTCGACGACCCAAGGATTTTTCTTATAC TTCGCGCTCTTTGCTGTCTACACGCCATACACGATCTATCAGTATGGATTCAAAGGATGGATGAGGGTGATTTTA CGAGATGGTTGGAAATATATTATTTTGGCTGCCTGTGATGTGGAAGGCAATTTTCTTGTTGTCAGGGCCTATCAA TACACGGATTTGCTTTCGTGTATGTTGCTGGATGCGTGGGCTATACCGGCTTGTATGTTCTTCTCCTGGATATAC CTCCGCCCTCGGTATCATTGGACTCAGATTCTGGGTGTTTTGATTTGCATCGGAGGACTTGGGCTTCTCGTTGTG TCCGATTTCGTAACTGACAAAAACTATCCGGCGCTTGCCAGAGGAAAGGGAGATGGATTCATGATCGCCGGTGCT ACACTCTACGGCTTCACCAATGCGACCGAAGAATTTTTCGTAAGGAAGCGCCCTTTGTACGAAGTTGTTGGGCAG CTCGGCATGTGGGGGTTCATCATAAATGGAATCCAAGCATCCGGTTTGGAGTCGAAGAGTATGAAGCAAGTACCT TGGAATGCTGGTATTATTGGCTTACTTATGGCCTACACCGCTGCATTGTTCATCCTCTATACCATTGCTCCGATG CTATATCGGTTGGCTTCTTCTACATACTATAACTTGAGCTTGCTTTCGAGTGATTTCTGGGGTCTGCTTTTTGGA TTATTCCTCTATCACTACCACCCATACTGGCTATACTTTGTCGCATTTGTTGTCATCCTCGGTGGCTTGATCACC TACTTTTGGTATTCTACTCCGGAAGAGCAGGCAGGAAGTGCGCAGCAGGTTCAAGCGCCTCCTTATGTCAATCAG CGTGGCCGATCCGTTCAACAAGATCCAGAACAACCTGCGGTCAACGATTTGGTTGATCCACTGGACTCTAACAAA TTGATACGTGACGATAGCCGAGGGCAGTAG |
| Gene | >Agabi119p4|092940 ATGGCGGACACGACCCCCAAGCCGGATGATACCAAAGACGACGGACGCAGCATTACACCCCACTCTTTGCCTTCC CCTCAACCCCAAAGTCCCGCTCGACCCCCAATCGAATATACTTCCTTCTCTGCTTTCGCAACCAGCTTTGGTCGC AGGTGGAAAAGCATATGGACCAAACGATTCATCTTATCCCTGTTGGCGGGACAGGTCCTTTCCCTTTGTATCACA TGTACAAACGTCACGACGACTGAGCTTGTCAGTCGAGGGTGGACGCTCTCGACGACCCAAGGATTTTTCTTGTCA GTTTTTCTCTCACTCCCATAAGGCAACCGGTGATCGCCAATCACACTTTTTATAGATACTTCGCGCTCTTTGCTG TCTACACGCCATACACGATCTATCAGTGTGAGATCACTCACAGAATTTTTTTCCATGTGATTGTGTTCGCTGACC TAGGCTCGGTTAGATGGATTCAAAGGATGGATGAGGGTGATTTTACGAGATGGTTGGAAATGTACGTTATCCTCT ATTCACGGGGACCTCGCTTTTTTATATGGACACTGAGCACATGGCCACAGATATTATTTTGGCTGCCTGTGATGT GGAAGGCAATTTTCTTGTTGTCAGGGTGTGTGCTTCGTATGGGTACTTGCGTCTGTCCTTGGCTAAGTCATTTCG TATTCAATCAAGGCCTATCAATACACGGATTTGCTTTCGTGTATGTTGCTGGATGCGTCAGTCCTTTTCTGTTAC TCGTAATTATCATTGACCTAACCGTGATGTAGGTGGGCTATACCGGCTTGTATGTTCTTCTCCTGGATATACCTC CGCCCTCGGTATCATTGGACTCAGATTCTGGTTCGTTTGTCTTGTAAATTTACTAGACGCTGAAATCCAATCTAA CACTCCACTTCTCAGGGTGTTTTGATTTGCATCGGAGGACTTGGGCTTCTCGTTGTGTCCGATTTCGTAACTGAC AAAAACTATCCGGCGCTTGCCAGAGGAAAGGGAGATGGATTCATGATCGCCGGTGCTACACTCTACGGCTTCAGT GAGTGCACTCAACAGTAAAGACAAGGATATATATGCTGACTTTACTATCCAGCCAATGCGACCGAAGAATTTTTC GTAAGGAAGCGCCCTTTGTACGAAGTTGTTGGGCAGCTCGGCATGTGGGGGTTCATCATAAATGGAATCCAAGCA TCCGGTTTGGAGTCGAAGAGTATGAAGCAAGTACCTTGGAATGCTGGTATTAGTAGGTCCCATTTCTTTCTTGCC GCTGGTATTTAGAGGCTAAACTGAATTTTACGTTTTTAGTTGGCTTACTTATGGCCTACACCGCTGCATTGTTCA TCCTCTATACCATTGCTCCGATGCTATATCGGTTGGCTTCTTCTACATACTATAACTTGAGCTTGCTTTCGAGTG ATTTCTGGGGTCTGCTTTTTGGTGAGTGCTTTTGATGCTCGTGAAATGTCTGAATTGCTGAAGGTAATCTTTTCA GGATTATTCCTCTATGTGTGTTCTTCGTCGGTCTTTCAGCCCAAAATCCGAACTCATTGACTCCTTCTATAGCAC TACCACCCATACTGGCTATACTTTGTCGCATTTGTTGTCATCCTCGGTGGCTTGATCACCTACTTTTGGTATTCT ACTCGTAAGTCTTTTTGCGTCCATTCTTTTTTTTTACATGTCGAGACTTATTTCGTAACTTCTAGCGGAAGAGCA GGCAGGAAGTGCGCAGCAGGTTCAAGCGCCTCCTTATGTCAATCAGCGTGGCCGATCCGTTCAACAAGATCCAGA ACAACCTGCGGTCAACGATTTGGTTGATCCACTGGACTCTAACAAATTGATACGTGACGATAGCCGAGGGCAGTA G |