© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|091710 |
| Gene name | |
| Location | scaffold_06:899957..902250 |
| Strand | - |
| Gene length (bp) | 2293 |
| Transcript length (bp) | 1818 |
| Coding sequence length (bp) | 1818 |
| Protein length (aa) | 606 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09507 | CDC27 | DNA polymerase subunit Cdc27 | 5.3E-35 | 20 | 598 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9EQ28|DPOD3_MOUSE | DNA polymerase delta subunit 3 OS=Mus musculus GN=Pold3 PE=1 SV=2 | 1 | 334 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0006260 | DNA replication | Yes |
| GO:0043625 | delta DNA polymerase complex | Yes |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:1990234 | transferase complex | No |
| GO:0005575 | cellular_component | No |
| GO:0032991 | protein-containing complex | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0042575 | DNA polymerase complex | No |
| GO:0008152 | metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0043226 | organelle | No |
| GO:0009987 | cellular process | No |
| GO:0140535 | intracellular protein-containing complex | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0061695 | transferase complex, transferring phosphorus-containing groups | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 53 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|091710 MTTQNIEDYLTKQLFISRNIVTYRSLSREFSIHVNVAKNELAAFHAKTANSRDQVCCATYIVSGLVLDGSGKGKL KESQSSSDMDVDMGYGFTPTQTPDYGFAKGSDQYGGDIVVQVRMTVVGEDKLEDTKAKYEKVTSVHVYSLSPSPI RDADLLCEPTRQIREIDNRKGIEMAKAVGRIIGADIQMLEGGIKAKTKTAATTNAQPSVPKLKAGPSISTAAVTK SEDKGKESVKEESKKPKPTGKLNFFAPKAPKEKEKGKETSSKDPVEPNRKMFFGAASKSLASTGKVKEATPTSIV PPRKESKKVEPTKRGTKRKPAAGGLSDEQDEETKSNSAAPSGPPSRFSSKPPSTRSSPQPAKLSSKPRIITSSDD EDDNEPPMKKTRRLPRRKAIPGSDDESGHDSKATSEAREALKSMMDLDDDKVERVARKAKVGALEEKVETELEQE VPEDVKKDEDVEMSDDRAAKPKPKLRKKKKVVPVGRNGLKKRPVTKTQTVKTDDGWTVCDYTSYESCEEVEETNE PVPVKKGKRGPAKPLKEKKEMSKMAGPGGAAVDATASGEDGKSESNTTIKMSTSRPAARTKGGQKQKTLGTFFAP QRPKK* |
| Coding | >Agabi119p4|091710 ATGACAACACAAAACATCGAAGACTATCTAACAAAGCAACTCTTCATCTCCAGGAACATCGTGACCTACCGCTCG TTAAGTAGGGAATTTAGTATTCACGTTAATGTTGCCAAAAATGAACTGGCAGCATTTCACGCCAAGACCGCTAAC TCGCGCGACCAAGTGTGTTGCGCGACATACATTGTCAGCGGGCTAGTATTGGACGGTTCGGGAAAGGGAAAACTT AAAGAGAGTCAAAGCTCGAGTGACATGGATGTCGACATGGGCTACGGATTCACACCGACGCAAACACCGGACTAT GGGTTCGCTAAAGGTAGTGATCAATATGGAGGAGATATTGTGGTCCAGGTCAGAATGACTGTAGTTGGTGAGGAC AAGCTCGAAGATACGAAAGCGAAGTATGAAAAAGTCACTTCGGTGCATGTCTATAGTTTGAGCCCTTCTCCAATT CGAGATGCAGATTTGCTTTGTGAACCCACGCGGCAAATCAGGGAAATCGATAACCGGAAGGGAATTGAGATGGCT AAGGCTGTTGGGAGGATTATTGGAGCAGATATACAGATGCTGGAGGGTGGTATAAAGGCCAAAACCAAAACGGCT GCTACCACCAACGCTCAGCCATCAGTCCCGAAGCTAAAGGCGGGGCCAAGCATTTCCACCGCCGCAGTTACAAAA AGCGAAGATAAAGGCAAAGAGTCTGTTAAAGAAGAGTCAAAGAAACCCAAGCCTACCGGGAAATTAAACTTTTTT GCTCCCAAGGCTCCCAAAGAGAAAGAGAAAGGAAAGGAAACATCATCCAAAGATCCTGTGGAGCCGAATAGGAAA ATGTTTTTCGGTGCAGCGTCGAAATCTTTAGCTTCTACAGGTAAGGTTAAAGAAGCCACACCTACGTCAATAGTA CCACCCCGGAAAGAATCTAAGAAAGTGGAGCCAACAAAGCGAGGGACAAAAAGAAAACCAGCTGCTGGTGGTCTA TCAGATGAGCAAGATGAGGAAACAAAGTCTAACTCCGCCGCTCCATCAGGGCCACCTTCCCGTTTCTCTTCTAAA CCTCCATCTACAAGATCTTCTCCCCAGCCGGCGAAGCTTTCGTCCAAACCGCGGATTATAACATCATCTGATGAT GAAGATGATAATGAGCCGCCAATGAAGAAAACTCGGAGACTGCCACGGCGCAAAGCTATTCCTGGCTCCGATGAT GAGAGCGGGCATGATTCGAAAGCCACTAGTGAAGCGAGGGAAGCTCTAAAATCCATGATGGACTTAGACGACGAT AAAGTGGAAAGAGTTGCTAGAAAGGCTAAGGTGGGGGCTTTGGAGGAGAAAGTTGAAACAGAGTTGGAACAGGAA GTACCGGAAGATGTAAAGAAAGATGAGGATGTAGAGATGTCTGATGATAGAGCGGCAAAACCAAAGCCAAAACTG AGAAAGAAGAAAAAAGTCGTACCAGTGGGTCGGAACGGCCTGAAGAAGCGTCCTGTGACGAAAACTCAGACGGTC AAGACAGACGATGGTTGGACTGTATGTGATTATACTTCCTATGAATCCTGCGAAGAAGTGGAGGAGACGAACGAA CCTGTACCCGTGAAAAAGGGCAAGCGAGGCCCGGCAAAACCTCTCAAAGAAAAAAAAGAAATGTCTAAGATGGCT GGACCAGGGGGCGCTGCTGTCGATGCAACTGCATCTGGGGAGGATGGCAAGTCTGAATCGAATACGACAATCAAG ATGTCTACAAGTCGACCTGCGGCTAGGACAAAGGGCGGTCAGAAGCAAAAAACACTGGGTACATTTTTCGCACCG CAAAGGCCCAAGAAGTAG |
| Transcript | >Agabi119p4|091710 ATGACAACACAAAACATCGAAGACTATCTAACAAAGCAACTCTTCATCTCCAGGAACATCGTGACCTACCGCTCG TTAAGTAGGGAATTTAGTATTCACGTTAATGTTGCCAAAAATGAACTGGCAGCATTTCACGCCAAGACCGCTAAC TCGCGCGACCAAGTGTGTTGCGCGACATACATTGTCAGCGGGCTAGTATTGGACGGTTCGGGAAAGGGAAAACTT AAAGAGAGTCAAAGCTCGAGTGACATGGATGTCGACATGGGCTACGGATTCACACCGACGCAAACACCGGACTAT GGGTTCGCTAAAGGTAGTGATCAATATGGAGGAGATATTGTGGTCCAGGTCAGAATGACTGTAGTTGGTGAGGAC AAGCTCGAAGATACGAAAGCGAAGTATGAAAAAGTCACTTCGGTGCATGTCTATAGTTTGAGCCCTTCTCCAATT CGAGATGCAGATTTGCTTTGTGAACCCACGCGGCAAATCAGGGAAATCGATAACCGGAAGGGAATTGAGATGGCT AAGGCTGTTGGGAGGATTATTGGAGCAGATATACAGATGCTGGAGGGTGGTATAAAGGCCAAAACCAAAACGGCT GCTACCACCAACGCTCAGCCATCAGTCCCGAAGCTAAAGGCGGGGCCAAGCATTTCCACCGCCGCAGTTACAAAA AGCGAAGATAAAGGCAAAGAGTCTGTTAAAGAAGAGTCAAAGAAACCCAAGCCTACCGGGAAATTAAACTTTTTT GCTCCCAAGGCTCCCAAAGAGAAAGAGAAAGGAAAGGAAACATCATCCAAAGATCCTGTGGAGCCGAATAGGAAA ATGTTTTTCGGTGCAGCGTCGAAATCTTTAGCTTCTACAGGTAAGGTTAAAGAAGCCACACCTACGTCAATAGTA CCACCCCGGAAAGAATCTAAGAAAGTGGAGCCAACAAAGCGAGGGACAAAAAGAAAACCAGCTGCTGGTGGTCTA TCAGATGAGCAAGATGAGGAAACAAAGTCTAACTCCGCCGCTCCATCAGGGCCACCTTCCCGTTTCTCTTCTAAA CCTCCATCTACAAGATCTTCTCCCCAGCCGGCGAAGCTTTCGTCCAAACCGCGGATTATAACATCATCTGATGAT GAAGATGATAATGAGCCGCCAATGAAGAAAACTCGGAGACTGCCACGGCGCAAAGCTATTCCTGGCTCCGATGAT GAGAGCGGGCATGATTCGAAAGCCACTAGTGAAGCGAGGGAAGCTCTAAAATCCATGATGGACTTAGACGACGAT AAAGTGGAAAGAGTTGCTAGAAAGGCTAAGGTGGGGGCTTTGGAGGAGAAAGTTGAAACAGAGTTGGAACAGGAA GTACCGGAAGATGTAAAGAAAGATGAGGATGTAGAGATGTCTGATGATAGAGCGGCAAAACCAAAGCCAAAACTG AGAAAGAAGAAAAAAGTCGTACCAGTGGGTCGGAACGGCCTGAAGAAGCGTCCTGTGACGAAAACTCAGACGGTC AAGACAGACGATGGTTGGACTGTATGTGATTATACTTCCTATGAATCCTGCGAAGAAGTGGAGGAGACGAACGAA CCTGTACCCGTGAAAAAGGGCAAGCGAGGCCCGGCAAAACCTCTCAAAGAAAAAAAAGAAATGTCTAAGATGGCT GGACCAGGGGGCGCTGCTGTCGATGCAACTGCATCTGGGGAGGATGGCAAGTCTGAATCGAATACGACAATCAAG ATGTCTACAAGTCGACCTGCGGCTAGGACAAAGGGCGGTCAGAAGCAAAAAACACTGGGTACATTTTTCGCACCG CAAAGGCCCAAGAAGTAG |
| Gene | >Agabi119p4|091710 ATGACAACACAAAACATCGAAGACTATCTAACAAAGCAACTCTTCATCTCCAGGAACATCGTGAGTGAATCATAT TGGCTATTTGAGCTTGAGCTGAATATCTTTTGCTTTATTGAAAGGTGACCTACCGCTCGTTAAGTAGGGAATTTA GTATTCACGTTAATGTTGCCAAAAAGTTCGTTTTCATCTCTGGGCCGAATGATCTCTTCGACCAAGTATAACGCA CAACTAATCGCCGATTAGTGAACTGGCAGCATTTCACGCCAAGACCGCTAACTCGCGCGACCAAGTGTGTTGCGC GACATACATTGTCAGCGGGCTAGTATTGGACGGTTCGGGAAAGGGAAAACTTAAAGAGAGTCAAAGCTCGAGTGA CATGGATGTCGACATGGGCTACGGATTCACACCGACGCAAACACCGGACTATGGGTTCGCTAAAGGTAGTGATCA ATATGGAGGAGATATTGTGGTCCAGGTCAGAATGACTGTAGTTGGTGAGGACAAGCTCGAAGGTATGCATATATG CTAATCATAAGAAGTTGTTGACTTTGATTCCTTCGGTATCGTGAATAAAATTTACCAGATACGAAAGCGAAGTAT GAAAAAGTCACTTCGGTGCATGTCTATAGTTTGAGCCCTTCTCCAATTCGAGTGCGTGTTTACCGTTTTCCGTAT CCTACTTGAATTTCATTCATGGGTTATGCTAGGATGCAGATTTGCTTTGTGAACCCACGCGGCAAATCAGGGAAA TCGATAACCGGAAGGGAATTGAGATGGCTAAGGCTGTTGGGAGGATTATTGGAGCAGATATACAGGTTTGGTATT TTGATGTTCAATGAACGTCGTCTAACGCATATCCATAGATGCTGGAGGGTGGTATAAAGGCCAAAACCAAAACGG CTGCTACCACCAACGCTCAGCCATCAGTCCCGAAGCTAAAGGCGGGGCCAAGCATTTCCACCGCCGCAGTTACAA AAAGCGAAGATAAAGGCAAAGAGTCTGTTAAAGAAGAGTCAAAGAAACCCAAGCCTACCGGGAAATTAAACTTTT TTGCTCCCAAGGCTCCCAAAGAGAAAGAGAAAGGAAAGGAAACATCATCCAAAGATCCTGTGGAGCCGAATAGGA AAATGTTTTTCGGTGCAGCGTCGAAATCTTTAGCTTCTACAGGTAAGGTTAAAGAAGCCACACCTACGTCAATAG TACCACCCCGGAAAGAATCTAAGAAAGTGGAGCCAACAAAGGTACGCGTGTTTACATGGAATATTCAATTAAATC ATAAAAATTCTTTATAGCGAGGGACAAAAAGAAAACCAGCTGCTGGTGGTCTATCAGATGAGCAAGATGAGGAAA CAAAGTCTAACTCCGCCGCTCCATCAGGGCCACCTTCCCGTTTCTCTTCTAAACCTCCATCTACAAGATCTTCTC CCCAGCCGGCGAAGCTTTCGTCCAAACCGCGGATTATAACATCATCTGATGATGAAGATGATAATGAGCCGCCAA TGAAGAAAACTCGGAGACTGCCACGGCGCAAAGCTATTCCTGGCTCCGATGATGAGAGCGGGCATGATTCGAAAG CCACTAGTGAAGCGAGGGAAGCTCTAAAATCCATGATGGACTTAGACGACGGTATGTATTATCTAAATCTCTCTT CTTTTTGGAGTTTCAATGTGTCATACATTACACAGATAAAGTGGAAAGAGTTGCTAGAAAGGCTAAGGTGGGGGC TTTGGAGGAGAAAGTTGAAACAGAGTTGGAACAGGAAGTACCGGAAGATGTAAAGAAAGATGAGGATGTAGAGAT GTCTGATGATAGAGCGGCAAAACCAAAGCCAAAACTGAGAAAGAAGAAAAAAGTCGTACCAGTGGGTCGGAACGG CCTGAAGAAGCGTCCTGTGACGAAAACTCAGACGGTCAAGACAGACGATGGTTGGAGTATGTGGCATCCCTTTGT CTACCTGTCAGAACAGTGACTCACCCGCGGATTTCGGAACTCAGCTGTATGTGATTATACTTCCTATGAATCCTG CGAAGAAGTGGAGGAGACGAACGAACCTGTACCCGTGAAAAAGGGCAAGCGAGGCCCGGCAAAACCTCTCAAAGA AAAAAAAGAAATGTCTAAGATGGCTGGACCAGGGGGCGCTGCTGTCGATGCAACTGCATCTGGGGAGGATGGCAA GTCTGAATCGAATACGACAATCAAGATGTCTACAAGTCGACCTGCGGCTAGGACAAAGGGCGGTCAGAAGCAAAA AACACTGGGTACATTTTTCGCACCGCAAAGGCCCAAGAAGTAG |