Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|090980
Gene name
Location	scaffold_06:698498..699593
Strand	+
Gene length (bp)	1095
Transcript length (bp)	990
Coding sequence length (bp)	990
Protein length (aa)	330

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF08325	WLM	WLM domain	1.6E-40	122	303
PF00240	ubiquitin	Ubiquitin family	1.5E-08	7	75

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O94580\|YQ77_SCHPO	Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=3 SV=1	4	238	1.0E-29
sp\|P38838\|WSS1_YEAST	DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1	121	223	5.0E-09
sp\|P0C895\|Y2010_ARATH	LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1	2	109	1.0E-06

GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 38	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|090980 MSSISFTVSFRGQSYPLDLPSDTTLINLQAILHEVTSVPPSNQKLLWKGKKAVGDDTTLIQAGFKDGVKVQMLGS TEQEVGGLKAAEQQHINRVQARTPSSRPRIQPRVTPASSSSLRFRFHKIAPLHHLPNPISAQTLLDKLANDPAIL HVMQQHSFSVGLLTELAPHEHPGLLGLNVNSGQEIKLRIRTDRYDGFRLYNDIRKVLCHELAHNVWGDHDENFKQ LNSQLNREVAEHDRARAAGIHTLATSTDPYGIYQAPEQEVEAEAWSHVLGGNSSTTSIGGDSRDDMRKRMLEATI KRLQREEEQLEISCGTGHSTDDKDAPTSP*
Coding	>Agabi119p4\|090980 ATGTCCTCCATCTCCTTCACAGTCTCCTTCCGTGGCCAGTCCTACCCACTCGACCTTCCCTCTGATACGACCCTC ATCAACCTCCAGGCGATACTACACGAAGTCACCTCCGTCCCACCCTCCAATCAGAAACTCCTCTGGAAGGGCAAG AAAGCTGTCGGCGATGACACCACTCTCATCCAAGCAGGCTTCAAAGATGGAGTCAAGGTGCAGATGCTCGGGTCC ACAGAACAGGAAGTCGGCGGACTCAAGGCTGCAGAACAACAGCACATAAATAGAGTTCAAGCTCGAACACCATCT TCAAGACCCCGAATACAACCAAGGGTCACACCAGCATCTTCCTCATCCCTTCGCTTTCGCTTTCACAAGATTGCC CCGCTGCACCACCTTCCCAACCCTATCTCCGCACAGACTCTACTTGACAAGTTGGCCAATGACCCTGCTATTCTT CATGTCATGCAACAGCATAGTTTCTCCGTTGGCCTCTTGACTGAACTTGCTCCGCATGAACACCCCGGCCTTCTT GGTCTTAACGTGAATTCCGGCCAGGAGATTAAGCTTCGTATACGGACAGACAGATATGATGGATTCAGACTTTAC AACGATATTAGAAAAGTCCTTTGTCATGAACTGGCGCATAATGTATGGGGTGATCATGACGAAAACTTCAAACAA CTTAATTCACAACTTAATCGTGAAGTCGCAGAACATGACCGTGCTAGAGCTGCTGGAATACATACCCTTGCCACA TCAACGGACCCATATGGAATCTATCAGGCACCGGAACAAGAAGTCGAAGCGGAAGCATGGTCTCACGTCCTCGGT GGGAATTCGTCTACAACATCCATTGGAGGAGATTCGAGAGATGACATGCGTAAGAGGATGCTAGAAGCGACCATC AAGCGATTGCAGCGTGAGGAAGAACAGTTGGAGATTAGTTGTGGAACTGGTCATTCCACAGATGACAAAGATGCG CCAACATCACCATGA
Transcript	>Agabi119p4\|090980 ATGTCCTCCATCTCCTTCACAGTCTCCTTCCGTGGCCAGTCCTACCCACTCGACCTTCCCTCTGATACGACCCTC ATCAACCTCCAGGCGATACTACACGAAGTCACCTCCGTCCCACCCTCCAATCAGAAACTCCTCTGGAAGGGCAAG AAAGCTGTCGGCGATGACACCACTCTCATCCAAGCAGGCTTCAAAGATGGAGTCAAGGTGCAGATGCTCGGGTCC ACAGAACAGGAAGTCGGCGGACTCAAGGCTGCAGAACAACAGCACATAAATAGAGTTCAAGCTCGAACACCATCT TCAAGACCCCGAATACAACCAAGGGTCACACCAGCATCTTCCTCATCCCTTCGCTTTCGCTTTCACAAGATTGCC CCGCTGCACCACCTTCCCAACCCTATCTCCGCACAGACTCTACTTGACAAGTTGGCCAATGACCCTGCTATTCTT CATGTCATGCAACAGCATAGTTTCTCCGTTGGCCTCTTGACTGAACTTGCTCCGCATGAACACCCCGGCCTTCTT GGTCTTAACGTGAATTCCGGCCAGGAGATTAAGCTTCGTATACGGACAGACAGATATGATGGATTCAGACTTTAC AACGATATTAGAAAAGTCCTTTGTCATGAACTGGCGCATAATGTATGGGGTGATCATGACGAAAACTTCAAACAA CTTAATTCACAACTTAATCGTGAAGTCGCAGAACATGACCGTGCTAGAGCTGCTGGAATACATACCCTTGCCACA TCAACGGACCCATATGGAATCTATCAGGCACCGGAACAAGAAGTCGAAGCGGAAGCATGGTCTCACGTCCTCGGT GGGAATTCGTCTACAACATCCATTGGAGGAGATTCGAGAGATGACATGCGTAAGAGGATGCTAGAAGCGACCATC AAGCGATTGCAGCGTGAGGAAGAACAGTTGGAGATTAGTTGTGGAACTGGTCATTCCACAGATGACAAAGATGCG CCAACATCACCATGA
Gene	>Agabi119p4\|090980 ATGTCCTCCATCTCCTTCACAGTCTCCTTCCGTGGCCAGTCCTACCCACTCGACCTTCCCTCTGATACGACCCTC ATCAACCTCCAGGCGATACTACACGAAGTCACCTCCGTCCCACCCTCCAATCAGAAACTCCTCTGGAAGGGCAAG AAAGCTGTCGGCGATGACACCACTCTCATCCAAGCAGGCTTCAAAGATGGAGTCAAGGTGCAGATGCTCGGGTCC ACAGAACAGGAAGTCGGCGGACTCAAGGCTGCAGAACAACAGCACATAAATAGAGTTCAAGCTCGAACACCATCT TCAAGACCCCGAATACAAGTAAGTACGTACGTACGTCATCTATTAATCCAACGATCTAACCTTTCGTTCTAGCCA AGGGTCACACCAGCATCTTCCTCATCCCTTCGCTTTCGCTTTCACAAGATTGCCCCGCTGCACCACCTTCCCAAC CCTATCTCCGCACAGACTCTACTTGACAAGTTGGCCAATGACCCTGCTATTCTTCATGTCATGCAACAGCATAGT TTCTCCGTTGGCCTCTTGACTGAACTTGCTCCGCATGAACACCCCGGCCTTCTTGGTCTTAACGTGAATTCCGGC CAGGAGATTAAGCTTCGTATACGGACAGACAGATATGATGGATTCAGACTTTACAACGATATTAGAAAAGTCCTT TGTCATGAACTGGCGCATAATGTATGGGGTGATCATGACGAAAACGTACGTTCTTAATCTGTCGTTCAGGGGTAG ATCATTCACCACCTATTTCAGTTCAAACAACTTAATTCACAACTTAATCGTGAAGTCGCAGAACATGACCGTGCT AGAGCTGCTGGAATACATACCCTTGCCACATCAACGGACCCATATGGAATCTATCAGGCACCGGAACAAGAAGTC GAAGCGGAAGCATGGTCTCACGTCCTCGGTGGGAATTCGTCTACAACATCCATTGGAGGAGATTCGAGAGATGAC ATGCGTAAGAGGATGCTAGAAGCGACCATCAAGCGATTGCAGCGTGAGGAAGAACAGTTGGAGATTAGTTGTGGA ACTGGTCATTCCACAGATGACAAAGATGCGCCAACATCACCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail