© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|086190 |
| Gene name | |
| Location | scaffold_05b:312085..314746 |
| Strand | + |
| Gene length (bp) | 2661 |
| Transcript length (bp) | 1575 |
| Coding sequence length (bp) | 1575 |
| Protein length (aa) | 525 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00128 | Alpha-amylase | Alpha amylase, catalytic domain | 6.6E-21 | 65 | 405 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P19571|AMT6_BACS7 | Glucan 1,4-alpha-maltohexaosidase OS=Bacillus sp. (strain 707) PE=1 SV=1 | 33 | 522 | 6.0E-123 |
| sp|P06279|AMY_GEOSE | Alpha-amylase OS=Geobacillus stearothermophilus GN=amyS PE=1 SV=3 | 36 | 521 | 3.0E-122 |
| sp|P00692|AMY_BACAM | Alpha-amylase OS=Bacillus amyloliquefaciens PE=1 SV=1 | 33 | 522 | 3.0E-118 |
| sp|P06278|AMY_BACLI | Alpha-amylase OS=Bacillus licheniformis GN=amyS PE=1 SV=1 | 36 | 522 | 4.0E-117 |
| sp|P26613|AMY2_SALTY | Cytoplasmic alpha-amylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=amyA PE=3 SV=3 | 36 | 521 | 5.0E-108 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P19571|AMT6_BACS7 | Glucan 1,4-alpha-maltohexaosidase OS=Bacillus sp. (strain 707) PE=1 SV=1 | 33 | 522 | 6.0E-123 |
| sp|P06279|AMY_GEOSE | Alpha-amylase OS=Geobacillus stearothermophilus GN=amyS PE=1 SV=3 | 36 | 521 | 3.0E-122 |
| sp|P00692|AMY_BACAM | Alpha-amylase OS=Bacillus amyloliquefaciens PE=1 SV=1 | 33 | 522 | 3.0E-118 |
| sp|P06278|AMY_BACLI | Alpha-amylase OS=Bacillus licheniformis GN=amyS PE=1 SV=1 | 36 | 522 | 4.0E-117 |
| sp|P26613|AMY2_SALTY | Cytoplasmic alpha-amylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=amyA PE=3 SV=3 | 36 | 521 | 5.0E-108 |
| sp|P26612|AMY2_ECOLI | Cytoplasmic alpha-amylase OS=Escherichia coli (strain K12) GN=amyA PE=1 SV=3 | 36 | 521 | 6.0E-106 |
| sp|P27932|AMY3A_ORYSJ | Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2 | 33 | 407 | 1.0E-19 |
| sp|Q94A41|AMY3_ARATH | Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=AMY3 PE=2 SV=1 | 38 | 431 | 2.0E-17 |
| sp|P27933|AMY3D_ORYSJ | Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2 | 38 | 430 | 2.0E-17 |
| sp|P08117|AMY3_WHEAT | Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1 | 34 | 435 | 6.0E-17 |
| sp|P27934|AMY3E_ORYSJ | Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1 | 34 | 407 | 4.0E-16 |
| sp|P27937|AMY3B_ORYSJ | Alpha-amylase isozyme 3B OS=Oryza sativa subsp. japonica GN=AMY1.6 PE=2 SV=1 | 34 | 407 | 8.0E-16 |
| sp|P27939|AMY3C_ORYSJ | Alpha-amylase isozyme 3C OS=Oryza sativa subsp. japonica GN=AMY1.7 PE=2 SV=2 | 34 | 407 | 3.0E-15 |
| sp|P04747|AMY3_HORVU | Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1 | 34 | 407 | 9.0E-15 |
| sp|Q8VZ56|AMY1_ARATH | Alpha-amylase 1 OS=Arabidopsis thaliana GN=AMY1 PE=1 SV=1 | 30 | 403 | 4.0E-14 |
| sp|P21543|AMYB_PAEPO | Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1 | 60 | 425 | 5.0E-11 |
| sp|Q8A1G0|SUSA_BACTN | Neopullulanase SusA OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=susA PE=3 SV=1 | 56 | 404 | 6.0E-11 |
| sp|P17859|AMYA_VIGMU | Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1 | 239 | 407 | 2.0E-08 |
| sp|Q8LFG1|AMY2_ARATH | Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1 | 38 | 144 | 7.0E-08 |
| sp|P17859|AMYA_VIGMU | Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1 | 38 | 142 | 5.0E-07 |
| sp|P09121|CDGT_BACS3 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 38-2) GN=cgt PE=1 SV=2 | 113 | 520 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|086190 MMASLMKDWLTWLKLRPQTPPALERMRLGPNDNANNPLMIQFFTWDALKEDTSWWKHLENEVPRLVELGFTQAWL PPMNKAAENGRQAGRGYDAYDLWDLGEFNQKGGVATRWGSKEELIRACETAKQYGLDILIDAVLNHKHGGDTTEQ AQAIPSHPQNRLKDVGKRQQIESWTVFNFPGRNGKYSSFRWNQAHFTGVDYDHKSKSNNIYRLVGPGHKGWSRNV DNELGNYDFLMGNDIDHRHPDVREDFLKWGTWILETTGASGFRLDAIKHIDRKFLVHFIRSVRERSRRERLFSVA EYWSGDVRKLLPYVRMLQGEVAFFDVPLHMNLCQASQQRSRYDLRKIFDGSLCQRKPRDAVTFVDNHDTVEGQSL ESWVEPAFKIQAYALILLRGVGHPCVFYGDLYPNKECYNESVARDLTLLINARQKFAYGPLQDYCHEKNCIGFVR KGDGRHAGCAVVVSNKEEDLDASVHNLRMNVGKEKAGAIYRSFMTQHGEVEIDGDGWGTFTCFANCVQVWVQAF* |
| Coding | >Agabi119p4|086190 ATGATGGCTTCTCTCATGAAGGACTGGCTAACTTGGCTCAAATTACGACCACAAACACCTCCTGCACTGGAGCGC ATGAGGCTCGGCCCCAATGACAACGCAAATAATCCCTTAATGATTCAGTTCTTCACTTGGGACGCGCTGAAAGAA GATACTTCCTGGTGGAAACATCTTGAAAATGAAGTGCCTCGTCTCGTCGAGCTAGGATTTACCCAGGCTTGGCTT CCGCCGATGAATAAAGCCGCTGAAAACGGACGACAAGCGGGACGGGGATATGACGCGTATGACCTGTGGGATCTC GGTGAATTTAATCAAAAAGGTGGCGTGGCAACGCGATGGGGGTCCAAGGAGGAGCTCATCCGAGCCTGCGAAACT GCCAAGCAGTATGGGCTCGATATTTTAATTGATGCAGTCTTGAACCATAAACATGGCGGAGACACAACGGAGCAG GCCCAGGCTATCCCTTCACATCCACAAAACCGCCTCAAAGACGTAGGCAAGAGGCAACAAATAGAGAGTTGGACC GTCTTCAATTTCCCCGGAAGGAATGGAAAGTATAGCAGCTTCAGATGGAATCAAGCTCACTTTACAGGAGTGGAC TATGACCACAAGTCGAAATCAAACAACATTTACCGACTTGTTGGGCCTGGACATAAAGGCTGGTCTCGCAACGTG GATAATGAGCTCGGAAATTATGATTTTCTTATGGGAAATGACATCGATCATCGCCATCCGGATGTCAGAGAGGAT TTCTTGAAGTGGGGCACTTGGATTCTTGAAACTACAGGTGCATCTGGCTTTCGACTCGATGCCATAAAACATATC GACCGCAAATTTCTTGTTCACTTCATTCGATCAGTTCGGGAGAGGTCTCGTCGGGAAAGGCTTTTCTCAGTTGCC GAATATTGGTCGGGAGACGTCCGGAAATTGTTACCATATGTTCGAATGCTACAAGGGGAGGTAGCCTTCTTCGAT GTTCCATTGCACATGAATCTATGTCAGGCTAGCCAACAACGCAGTCGGTACGATCTTCGTAAAATTTTCGACGGT TCTCTTTGTCAGCGTAAACCTCGAGACGCTGTAACATTCGTTGATAATCACGATACGGTTGAGGGACAGAGCCTC GAAAGTTGGGTGGAGCCGGCTTTCAAAATTCAAGCCTATGCGTTGATATTACTCCGAGGTGTCGGTCACCCCTGC GTCTTTTACGGTGACCTTTATCCCAACAAAGAATGCTACAACGAGAGTGTCGCCAGAGACCTCACCCTCTTGATC AATGCTAGGCAGAAATTCGCTTACGGCCCTCTGCAAGATTATTGCCATGAAAAGAATTGTATCGGATTTGTCCGC AAAGGCGATGGTCGGCACGCGGGTTGCGCGGTGGTCGTCAGTAACAAAGAAGAAGACCTTGATGCTTCCGTTCAT AATCTTCGCATGAACGTCGGAAAAGAAAAAGCCGGAGCTATCTATCGAAGCTTTATGACGCAACATGGAGAAGTC GAAATAGATGGCGATGGCTGGGGGACTTTTACTTGTTTTGCTAATTGTGTTCAGGTTTGGGTTCAAGCGTTTTGA |
| Transcript | >Agabi119p4|086190 ATGATGGCTTCTCTCATGAAGGACTGGCTAACTTGGCTCAAATTACGACCACAAACACCTCCTGCACTGGAGCGC ATGAGGCTCGGCCCCAATGACAACGCAAATAATCCCTTAATGATTCAGTTCTTCACTTGGGACGCGCTGAAAGAA GATACTTCCTGGTGGAAACATCTTGAAAATGAAGTGCCTCGTCTCGTCGAGCTAGGATTTACCCAGGCTTGGCTT CCGCCGATGAATAAAGCCGCTGAAAACGGACGACAAGCGGGACGGGGATATGACGCGTATGACCTGTGGGATCTC GGTGAATTTAATCAAAAAGGTGGCGTGGCAACGCGATGGGGGTCCAAGGAGGAGCTCATCCGAGCCTGCGAAACT GCCAAGCAGTATGGGCTCGATATTTTAATTGATGCAGTCTTGAACCATAAACATGGCGGAGACACAACGGAGCAG GCCCAGGCTATCCCTTCACATCCACAAAACCGCCTCAAAGACGTAGGCAAGAGGCAACAAATAGAGAGTTGGACC GTCTTCAATTTCCCCGGAAGGAATGGAAAGTATAGCAGCTTCAGATGGAATCAAGCTCACTTTACAGGAGTGGAC TATGACCACAAGTCGAAATCAAACAACATTTACCGACTTGTTGGGCCTGGACATAAAGGCTGGTCTCGCAACGTG GATAATGAGCTCGGAAATTATGATTTTCTTATGGGAAATGACATCGATCATCGCCATCCGGATGTCAGAGAGGAT TTCTTGAAGTGGGGCACTTGGATTCTTGAAACTACAGGTGCATCTGGCTTTCGACTCGATGCCATAAAACATATC GACCGCAAATTTCTTGTTCACTTCATTCGATCAGTTCGGGAGAGGTCTCGTCGGGAAAGGCTTTTCTCAGTTGCC GAATATTGGTCGGGAGACGTCCGGAAATTGTTACCATATGTTCGAATGCTACAAGGGGAGGTAGCCTTCTTCGAT GTTCCATTGCACATGAATCTATGTCAGGCTAGCCAACAACGCAGTCGGTACGATCTTCGTAAAATTTTCGACGGT TCTCTTTGTCAGCGTAAACCTCGAGACGCTGTAACATTCGTTGATAATCACGATACGGTTGAGGGACAGAGCCTC GAAAGTTGGGTGGAGCCGGCTTTCAAAATTCAAGCCTATGCGTTGATATTACTCCGAGGTGTCGGTCACCCCTGC GTCTTTTACGGTGACCTTTATCCCAACAAAGAATGCTACAACGAGAGTGTCGCCAGAGACCTCACCCTCTTGATC AATGCTAGGCAGAAATTCGCTTACGGCCCTCTGCAAGATTATTGCCATGAAAAGAATTGTATCGGATTTGTCCGC AAAGGCGATGGTCGGCACGCGGGTTGCGCGGTGGTCGTCAGTAACAAAGAAGAAGACCTTGATGCTTCCGTTCAT AATCTTCGCATGAACGTCGGAAAAGAAAAAGCCGGAGCTATCTATCGAAGCTTTATGACGCAACATGGAGAAGTC GAAATAGATGGCGATGGCTGGGGGACTTTTACTTGTTTTGCTAATTGTGTTCAGGTTTGGGTTCAAGCGTTTTGA |
| Gene | >Agabi119p4|086190 ATGATGGCTTCTCTCATGAAGGACTGGCTAACTTGGCTCAAATTACGACCACAAACACCTCCTGCACTGGAGCGC ATGAGGCTCGGCCCCAATGACAACGCAAATAATCCCTTAATGGTTCGGTTGCGTTACCCTTTTCCGGCTTTCATG GATCCCTAAATCTTCTGAAATAGATTCAGTTCTTCACTTGGGACGCGCTGAAAGAAGATACTTCCTGGTGGAAAC ATCTTGAAAATGAAGTGCCTCGTCTCGTCGAGCTAGGATTTACCCAGGCTTGGCTTCCGCCGATGAATAAAGCCG CTGAAAACGTTAGTTAAAAAATGCCAGAAATATAGAGCGTTACTATCGATCCGGGCTGGTCGCTTTTCGCCCTTA TTTGTCGTACACCGCATATTGCCAGGCCAAGCTTTCTCACTTTCGAATTAACAGGGACGACAAGCGGGACGGGGA TATGACGCGTATGACCTGGTAAGGAAATTTCTGGAATCTCAAGAAGTAACTACGACGATGTATTGTGCCCCGCCA GTGGGATCTCGGTGAATTTAATCAAAAAGGTGGCGTGGCAACGCGATGGGGGTCCAAGGAGGAGCTCATCCGAGC CTGCGAAACTGCCAAGCAGTATGGGCTCGATATTTTAATTGATGCAGTCTTGAACGTGAGTTATACTGCTCCGGA ATTTTGTTTGATACTAACTATTGTCAGCATAAACATGGCGGAGACACAACGGAGCAGGCCCAGGCTATCCCTTCA CATCCACAAAACCGCCTCAAAGACGTAGGCAAGAGGCAACAAATAGAGGTCTGTCTTTATTTTTGTCTGCGATCA TAATTTAATAACCTTCTTCAGAGTTGGACCGTCTTCAATTTCCCCGGAAGGAATGGAAAGGTGAGTTTATATCTA TTTTAGCACCCTGGACTCGCAAAATGACTGTAATTCTGAAAAGTATAGCAGCTTCAGATGGAATCAAGCTCACTT TACAGGTTCGTTCATCCACCTGTGTCCGCTTTGGTGTCATAATTTTTGTACAGGAGTGGACTATGACCACAAGTC GAAATCAAACAACATTTACCGACTTGTTGGGCCTGGACATAAAGGCTGGTCTCGCAACGTGGATAATGAGCTCGG AAATTATGATTTTCTTATGGGAAATGACGTTCGTGTCTTTGTACCATGCTGTCCGTAAGAATCACCTGCTAACGA CTTTCGCCAGATCGATCATCGCCATCCGGATGTCAGAGAGGATTTCTTGAAGTGGGGCACTTGGATTCTTGAAGT CAGTTATATCATTTGCCTCTTATGGCATAATTGACACAGCCTATTCAGACTACAGGTGCATCTGGCTTTCGACTC GATGCCATAAAACATATCGACCGCAAATTTCTTGTTCACTTCGTAAGAAAATACTACCATTTGTGATTACCTTTC TTACCTGTTTTCTTAGATTCGATCAGTTCGGGAGAGGTCTCGTCGGGAAAGGCTTTTCTCAGTTGGTGCGACCTT CCTCTTCTTTTTCACATCAAAGCTAATTCATTTGCAGCCGAATATTGGTCGGGAGAGTAAGTCAATCCCCGCAGG GGTGGAGTACACCAAGACACTCATACACTCCCAGCGTCCGGAAATTGTTACCATATGTTCGAATGCTACAAGGGG AGGTTGGTTGATAATCAACAACCCTTGAATACTCATTCTAATTGATCTCCACTACATTCCAGGTAGCCTTCTTCG ATGTTCCATTGCACATGAATCTATGTCAGGCTAGCCAACAACGCAGTCGGTACGATCTTCGTAAAATTTTCGACG GTTCTCTTTGTCAGCGTAAACCTCGAGACGCTGTAACATTCGTTGATAATCACGAGTGAGCGCTTGACACTTTTC GCGATTGAGATTTTGGATTCTGACGGCTACTCAGTACGGTATGTATGTCCATTGATCCTTTTGATTCGCTTTTTG AGAGTGATATCATGTTCCAAGGTTGAGGGACAGAGCCTCGAAAGTTGGGTAAGCCTCACGCTCGTTGAACTTTTT AAAACCCTGTGCCCATTACATATCGATCAGGTGGAGCCGGCTTTCAAAATTCAAGCCTATGCGTTGATATTACTC CGAGGTGTCGGTCACCCGTGAGTACTTTCTGACTCCTCTAGAACGCTCTTATCAACTCAAGTCGGGTTTCAGCTG CGTCTTTTACGGTGACCTTTATCCCAACAAAGAATGCTACAACGAGAGTGTCGCCAGAGACCTCACCCTCTTGAT CAATGCTAGGCAGAAATTCGCTTACGGCCCTCTGCAAGATTATTGCCATGAAAAGAATTGTATCGGATTTGTCCG CAAAGGCGATGGTCGGCACGCGGGTTGCGCGGTGGTCGTCAGTAACAAAGAAGAAGAGTAAGCGCCTGAAAGGCT CAGTGTCGGTAATTTCCTTTAACTCTGTTATTCAGCCTTGATGCTTCCGTTCATAATCTTCGCATGAACGTCGGA AAAGTGAGTATCAATTCTCTGCCTTCAGGATGTAGTGTGTGTAACAAGTTACCTTGTTAGGAAAAAGCCGGAGCT ATCTATCGAAGCTTTATGACGCAACATGGAGAAGTCGAAATAGATGGCGATGGCTGGGGGACTTTTACTTGTTTT GCTAATTGTGTTCAGGTTTGGGTTCAAGCGTTTTGA |