Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|085550
Gene name
Locationscaffold_05b:156819..158095
Strand+
Gene length (bp)1276
Transcript length (bp)816
Coding sequence length (bp)816
Protein length (aa) 272

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02926 THUMP THUMP domain 1.1E-10 111 239

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P87151|YB0A_SCHPO Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.10c PE=3 SV=2 34 269 3.0E-34
sp|P53072|TAN1_YEAST tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1 34 265 1.0E-23
sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1 SV=1 14 262 4.0E-23
sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1 34 253 6.0E-22
sp|Q9NXG2|THUM1_HUMAN THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2 34 268 9.0E-22
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P87151|YB0A_SCHPO Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.10c PE=3 SV=2 34 269 3.0E-34
sp|P53072|TAN1_YEAST tRNA acetyltransferase TAN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAN1 PE=1 SV=1 34 265 1.0E-23
sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1 SV=1 14 262 4.0E-23
sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1 34 253 6.0E-22
sp|Q9NXG2|THUM1_HUMAN THUMP domain-containing protein 1 OS=Homo sapiens GN=THUMPD1 PE=1 SV=2 34 268 9.0E-22
sp|Q9VZD8|THUM1_DROME THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG15014 PE=1 SV=2 97 268 1.0E-18
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|085550
MAETKKKLLGREKKKKYRSDGTPVWEKRSIDGPGVWVSCVKGKEKQTVGELYDLFESLADELWPQDTSSQEENTA
STSEELSLEAQIANEMSSLQKSRREKRFASCQTNTPCVVFLSCKPPVDPVQLVVRHIENVQRTGVTQTRHTHRFV
PISGSSVANLPEIKTLCQDIFNKFFEPHENRSFTYKVELRMRNHSTISRSVLIQHIAQCVPAGHTVSLDNPEIFI
LVEVFKSVCGISIVQDYYRLQKFNVMEIANAKQRSEPSNSDSRVPD*
Coding >Agabi119p4|085550
ATGGCAGAAACAAAGAAGAAGCTGCTGGGCAGAGAAAAGAAGAAGAAGTACCGATCTGACGGGACCCCAGTCTGG
GAGAAGCGTAGCATAGACGGGCCTGGTGTTTGGGTAAGCTGCGTCAAAGGAAAAGAAAAGCAGACTGTCGGAGAA
TTATACGATCTTTTTGAATCGTTAGCCGATGAGTTATGGCCACAAGATACCAGTAGTCAAGAAGAAAACACAGCT
TCAACGAGCGAAGAGCTTAGTCTTGAAGCTCAAATTGCCAATGAAATGTCGTCCCTGCAGAAATCGCGGAGAGAA
AAAAGATTCGCCAGCTGCCAAACAAACACTCCCTGCGTTGTGTTCCTTTCCTGCAAGCCACCAGTTGACCCTGTC
CAACTTGTTGTGAGGCACATAGAAAATGTTCAGCGCACGGGCGTGACACAAACACGACACACACACCGTTTTGTC
CCAATTAGCGGAAGCTCGGTAGCAAATCTACCGGAAATAAAAACATTATGTCAGGATATATTTAACAAATTCTTT
GAGCCGCACGAGAATCGGAGTTTTACGTACAAGGTTGAATTGAGAATGAGAAACCATAGCACAATATCACGTTCT
GTGCTTATTCAACATATCGCCCAGTGCGTCCCTGCTGGTCACACAGTATCGCTGGACAATCCAGAGATTTTTATC
CTCGTGGAGGTTTTCAAGAGCGTTTGTGGCATTTCTATCGTACAAGACTATTATCGCCTCCAAAAGTTCAATGTC
ATGGAAATCGCCAATGCGAAACAGCGTTCAGAGCCATCAAATAGTGATAGTCGAGTTCCGGACTAA
Transcript >Agabi119p4|085550
ATGGCAGAAACAAAGAAGAAGCTGCTGGGCAGAGAAAAGAAGAAGAAGTACCGATCTGACGGGACCCCAGTCTGG
GAGAAGCGTAGCATAGACGGGCCTGGTGTTTGGGTAAGCTGCGTCAAAGGAAAAGAAAAGCAGACTGTCGGAGAA
TTATACGATCTTTTTGAATCGTTAGCCGATGAGTTATGGCCACAAGATACCAGTAGTCAAGAAGAAAACACAGCT
TCAACGAGCGAAGAGCTTAGTCTTGAAGCTCAAATTGCCAATGAAATGTCGTCCCTGCAGAAATCGCGGAGAGAA
AAAAGATTCGCCAGCTGCCAAACAAACACTCCCTGCGTTGTGTTCCTTTCCTGCAAGCCACCAGTTGACCCTGTC
CAACTTGTTGTGAGGCACATAGAAAATGTTCAGCGCACGGGCGTGACACAAACACGACACACACACCGTTTTGTC
CCAATTAGCGGAAGCTCGGTAGCAAATCTACCGGAAATAAAAACATTATGTCAGGATATATTTAACAAATTCTTT
GAGCCGCACGAGAATCGGAGTTTTACGTACAAGGTTGAATTGAGAATGAGAAACCATAGCACAATATCACGTTCT
GTGCTTATTCAACATATCGCCCAGTGCGTCCCTGCTGGTCACACAGTATCGCTGGACAATCCAGAGATTTTTATC
CTCGTGGAGGTTTTCAAGAGCGTTTGTGGCATTTCTATCGTACAAGACTATTATCGCCTCCAAAAGTTCAATGTC
ATGGAAATCGCCAATGCGAAACAGCGTTCAGAGCCATCAAATAGTGATAGTCGAGTTCCGGACTAA
Gene >Agabi119p4|085550
ATGGCAGAAACAAAGAAGAAGCTGCTGGGCAGAGAAAAGAAGAAGAAGTACCGATCTGTATTGTTGTTCTTTCCA
ACAAATCAACAACAGTACCACTGATACTTAACCATTCTGTCTTTAAAGGACGGGACCCCAGTCTGGGAGAAGCGT
AGCATAGACGGGCCTGGTGTTTGGGTAAGCTGTAAGGCCAGTTTATGTCCGCAAAGTGGATCCTGTTTGACAAGT
TTTTCAGGCGTCAAAGGAAAAGAAAAGCAGACTGTCGGAGAATTATACGATCTTTTTGAATCGGTAGACTATCAC
CTTCCTTGCCGGGTTAAGGATTCATACGAAGTTCACTTGTCAACTTGCCAGTTAGCCGATGAGTTATGGCCACAA
GATACCAGTAGTCAAGAAGAAAACACAGCTTCAACGAGCGAAGAGCTTAGTCTTGAAGCTCAAATTGCCAATGAA
ATGTCGTCCCTGCAGAAATCGCGGAGAGAAAAAAGATTCGGTATCGTGGCTTTCCGACTTTTGTATTCCAATTCA
TCTCACGAGATCAGCCAGCTGCCAAACAAACACTCCCTGCGGTAAGGGCTTAACTACTTGTTCCTTCTACTAATT
AACGAGGATCTGATAGTTGTGTTCCTTTCCTGCAAGCCACCAGTTGACCCTGTCCAACTTGTTGTGAGGCACATA
GAAAATGTTCAGCGCACGGGCGTGACACAAACACGGTAAGTCGCTGTAAATCTAAATGTACGAATTAGCGGTGGG
GAGATTTTTTATTCTCATTTTCAGACACACACACCGTTTTGTCCCAATTAGCGGAAGCTCGGTAGCAAATCTACC
GGAAATAAAAACATTATGTCAGGATATATTTAACAAATTCTTTGAGCCGCACGAGAATCGGAGTTTTACGGTTAG
TCAATCCCTTCGCTGCATCTTACATTCTTTGCAACTTGATCAACTAATTACTATACTAGTACAAGGTTGAATTGA
GAATGAGAAACCATAGCACAATATCACGTTCTGTGCTTATTCAACATATCGCCCAGTGCGTCCCTGCTGGTCACA
CAGTATCGCTGGACAATCCAGAGATTTTTATCCTCGTGGAGGTTTTCAAGGTACTTTATTTGACTCGTATAGGCA
CATGCATATTGACTAAGAAAATTAACAGAGCGTTTGTGGCATTTCTATCGTACAAGACTATTATCGCCTCCAAAA
GTTCAATGTCATGGAAATCGCCAATGCGAAACAGCGTTCAGAGCCATCAAATAGTGATAGTCGAGTTCCGGACTA
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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