Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|082720
Gene name
Locationscaffold_05a:1215056..1216354
Strand+
Gene length (bp)1298
Transcript length (bp)1077
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11790 Glyco_hydro_cc Glycosyl hydrolase catalytic core 1.6E-48 125 350

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09788|ASL1_SCHPO Alkali-sensitive linkage protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asl1 PE=1 SV=1 168 352 6.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|082720
MLVFKLCFSSLALVSLAGPMLTAYASSLHHHHQLSSRMTRNRRNLCLPRKPSASPEAVAVSTEHSQVEPTPVQAS
VSSSLDSVPSSTDQPDVASSSYKTLTPSISSLYIPNGIKAGVAGGDAYTILQNHIGWWYDWSANPHKPGNPIAVP
MLWGTGKVDSTDAKRLADFKKLSSSSSSSQRPQFVLGYEEPDCTSGGGSSGVSVEQGVREWENLMGPLKRKGTKI
GSPSMCKQADETWLKEFSKKISTTWDFTAIHVNKNNLDGVKKDIDHYWAAYGKPIWVTEFACVNDHNTFQPCTNQ
QQINTFIQQAVDYFEHDSRVYAYAFSNGEGLGTVWPMMHGGKFSESGKAYLAAISKYH*
Coding >Agabi119p4|082720
ATGCTTGTGTTCAAGTTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCTGCACCACCACCACCAGCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAGGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGACTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAAAACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCAGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCC
TCGTCGTCCTCTCAACGTCCGCAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTAGAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAAAAGATATCGACGACTTGG
GATTTTACTGCGATTCATGTGAACAAGAATAACTTGGACGGGGTGAAGAAGGATATCGACCATTACTGGGCCGCA
TATGGCAAACCCATCTGGGTAACTGAATTCGCCTGCGTGAATGATCACAACACGTTTCAGCCATGCACGAACCAA
CAGCAAATTAACACCTTCATTCAACAAGCCGTGGATTATTTTGAACATGACAGCAGGGTGTACGCTTATGCGTTC
AGCAACGGAGAAGGCTTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAATTCAGTGAATCTGGCAAAGCTTAT
CTAGCTGCTATCAGCAAGTATCATTAA
Transcript >Agabi119p4|082720
ATGCTTGTGTTCAAGTTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCTGCACCACCACCACCAGCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAGGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGACTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAAAACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCAGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCC
TCGTCGTCCTCTCAACGTCCGCAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTAGAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAAAAGATATCGACGACTTGG
GATTTTACTGCGATTCATGTGAACAAGAATAACTTGGACGGGGTGAAGAAGGATATCGACCATTACTGGGCCGCA
TATGGCAAACCCATCTGGGTAACTGAATTCGCCTGCGTGAATGATCACAACACGTTTCAGCCATGCACGAACCAA
CAGCAAATTAACACCTTCATTCAACAAGCCGTGGATTATTTTGAACATGACAGCAGGGTGTACGCTTATGCGTTC
AGCAACGGAGAAGGCTTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAATTCAGTGAATCTGGCAAAGCTTAT
CTAGCTGCTATCAGCAAGTATCATTAA
Gene >Agabi119p4|082720
ATGCTTGTGTTCAAGTTGTGTTTCTCTTCGCTCGCTCTTGTGTCTTTGGCTGGTCCAATGCTCACCGCCTATGCG
TCGTCTCTGCACCACCACCACCAGCTTTCTTCACGCATGACTCGCAACCGGCGGAACCTATGTCTGCCCCGTAAG
CCATCCGCATCCCCAGAAGCAGTGGCAGTCAGTACGGAACATTCTCAGGTCGAACCTACACCAGTCCAGGCCTCT
GTTTCATCTTCATTAGACTCGGTGCCAAGTTCTACAGACCAGCCTGATGTCGCGTCTTCTTCATATAAAACACTG
ACTCCGTCAATTTCTTCCTTATACATACCCAATGGGATCAAAGCAGGTGTAGCAGGTGGCGATGCCTATACCATT
TTACAAAATCACATTGGATGGTGGTATGATTGGTCTGCCAACCCACATAAACCTGGCAATCCGATCGCTGTACCC
ATGCTTTGGGGTACAGGCAAGGTGGATTCAACGGATGCGAAGCGGTTAGCTGATTTTAAGAAACTCTCGTCATCC
TCGTCGTCCTCTCAACGTCCGCAATTTGTACTTGGATATGAGGAACCGGATTGTACGAGTGGAGGTGGATCGAGT
GGTGTGAGCGTTGAACAGGGTGTTAGAGAATGGGAGAATTTGATGGGGCCGTTGAAGAGAAAAGGAACCAAGATT
GGAAGTCCATCCATGTGCAGTGAGTTTTTTTTTTTTTTTTCGTTAAAACGAACGAAATGAAAGTCATTCCAACAC
ATTTCTATGATAGAACAAGCGGATGAAACGTGGCTCAAGGAGTTTTCGAAAAAGATATCGACGACTTGGGATTTT
ACTGCGATTCATGTGAACAAGAATAACTTGGACGGGGTGAAGAAGGATATCGTACGTTGTCAAATTGATTCCAAC
ACTGGTCACAAAGTGAATTTCCTTGTGTAGGACCATTACTGGGCCGCATATGGCAAACCCATCTGGGTAACTGAA
TTCGCCTGCGTGAATGGTGTGTGTTTTTTCCTTACTTTTTACTACGGTATTGACATGAAAACATAGATCACAACA
CGTTTCAGCCATGCACGAACCAACAGCAAATTAACACCTTCATTCAACAAGCCGTGGATTATTTTGAACATGACA
GCAGGGTGTACGCTTATGCGTTCAGCAACGGAGAAGGCTTGGGCACTGTTTGGCCGATGATGCATGGTGGTAAAT
TCAGGTAAAGAGTTTTTCTACTTTTGCTCATGTGTGATTAACGTCTCTACAGTGAATCTGGCAAAGCTTATCTAG
CTGCTATCAGCAAGTATCATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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