Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|081570
Gene name
Locationscaffold_05a:922968..923491
Strand-
Gene length (bp)523
Transcript length (bp)261
Coding sequence length (bp)261
Protein length (aa) 87

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02297 COX6B Cytochrome oxidase c subunit VIb 2.6E-18 20 79

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2 1 84 2.0E-36
sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2 13 84 1.0E-30
sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1 13 84 1.0E-24
sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2 7 84 2.0E-22
sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1 7 84 8.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|O94581|COX12_SCHPO Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2 1 84 2.0E-36
sp|Q01519|COX12_YEAST Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2 13 84 1.0E-30
sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1 13 84 1.0E-24
sp|Q9SUD3|CX6B3_ARATH Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2 7 84 2.0E-22
sp|Q945L0|CX6B2_ARATH Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1 7 84 8.0E-22
sp|P00429|CX6B1_BOVIN Cytochrome c oxidase subunit 6B1 OS=Bos taurus GN=COX6B1 PE=1 SV=2 4 84 9.0E-22
sp|P14854|CX6B1_HUMAN Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2 4 84 9.0E-22
sp|Q5RCT0|CX6B1_PONAB Cytochrome c oxidase subunit 6B1 OS=Pongo abelii GN=COX6B1 PE=3 SV=3 4 84 1.0E-21
sp|Q7YRK6|CX6B1_TARSY Cytochrome c oxidase subunit 6B1 OS=Tarsius syrichta GN=COX6B1 PE=3 SV=3 4 84 3.0E-21
sp|Q53CG4|CX6B1_MACMU Cytochrome c oxidase subunit 6B1 OS=Macaca mulatta GN=COX6B1 PE=3 SV=3 6 84 4.0E-20
sp|Q4R374|CX6B1_MACFA Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis GN=COX6B1 PE=3 SV=3 6 84 4.0E-20
sp|P56391|CX6B1_MOUSE Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1 SV=2 4 84 2.0E-19
sp|Q6YFP9|CX6B2_BOVIN Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1 15 84 2.0E-18
sp|Q80ZN9|CX6B2_MOUSE Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=1 SV=1 15 84 2.0E-18
sp|Q6YFQ2|CX6B2_HUMAN Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=1 SV=1 15 84 7.0E-17
sp|Q6YFQ1|CX6B2_RAT Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2 PE=2 SV=1 15 84 7.0E-17
sp|Q54P95|COX6B_DICDI Probable cytochrome c oxidase subunit 6B OS=Dictyostelium discoideum GN=DDB_G0284693 PE=3 SV=1 13 80 2.0E-15
sp|Q9LPJ2|CX6BL_ARATH Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana GN=At1g32710 PE=3 SV=2 16 70 1.0E-08
sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens GN=COA6 PE=1 SV=1 7 85 8.0E-06
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GO

GO Term Description Terminal node
GO:0045277 respiratory chain complex IV Yes
GO:0005739 mitochondrion Yes
GO:0098796 membrane protein complex No
GO:0043229 intracellular organelle No
GO:0043226 organelle No
GO:0032991 protein-containing complex No
GO:0098803 respiratory chain complex No
GO:0043227 membrane-bounded organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0070069 cytochrome complex No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID5
Orthogroup5617
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|081570
Agaricus bisporus var bisporus H97 AgabiH97|081570
Agaricus bisporus var burnettii H119p4 Agabi119p4|081570 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|081570
MSDSSDLSSKYTLQTVGFDARFPNTNQTRNCFQNYTDYFKCVAAKGEDFAPCKQFKKAYNSLCPNDWISKWDEAR
ENGTFQASLEP*
Coding >Agabi119p4|081570
ATGTCGGACTCTTCTGATCTCTCAAGCAAATACACCCTGCAGACCGTGGGCTTTGACGCCCGCTTCCCCAACACC
AACCAGACCAGAAATTGCTTCCAGAACTACACGGACTATTTCAAATGTGTTGCTGCCAAGGGTGAAGACTTTGCT
CCTTGCAAACAGTTCAAGAAGGCATACAACTCGCTGTGCCCCAATGACTGGATCTCTAAGTGGGATGAAGCACGC
GAAAATGGCACATTCCAAGCATCTCTAGAACCATGA
Transcript >Agabi119p4|081570
ATGTCGGACTCTTCTGATCTCTCAAGCAAATACACCCTGCAGACCGTGGGCTTTGACGCCCGCTTCCCCAACACC
AACCAGACCAGAAATTGCTTCCAGAACTACACGGACTATTTCAAATGTGTTGCTGCCAAGGGTGAAGACTTTGCT
CCTTGCAAACAGTTCAAGAAGGCATACAACTCGCTGTGCCCCAATGACTGGATCTCTAAGTGGGATGAAGCACGC
GAAAATGGCACATTCCAAGCATCTCTAGAACCATGA
Gene >Agabi119p4|081570
ATGTCGGACTCTTCTGATCTCTCAAGGTTAGTGTTCTCTCCTGTGAGATCCAGTATTGTTCATGCATTTTTTCCC
TAGCAAATACACCCTGCAGACCGTGGGCTTTGACGGTACTTACTTTATCGGCTTGCTCAATTTGTACTCAGTCTG
AATGTCTCCTCAGCCCGCTTCCCCAACACCAACCAGACCAGAAATTGGTGCGCGAGATAGAAATTTGATTATTCT
CCTCCCCTCTTACATGTATCCCCCAGCTTCCAGAACTACACGGACTATTTCAAATGTGTTGCTGCCAAGGGTGAA
GACTTTGCTCCTTGCAAACAGTTCAAGAAGGCATACAACTCGCTGTGCCCCAGTATGTTCTACCTTTTTTGTCGG
TAATCTATATGACATACTGACTTTGTTGCAGATGACTGGGTATGAACAGGTTCTTCACCGTTTTGACTTGCGACT
GACAACTACTCAGATCTCTAAGTGGGATGAAGCACGCGAAAATGGCACATTCCAAGCATCTCTAGAACCATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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