© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|081110 |
| Gene name | |
| Location | scaffold_05a:817328..817739 |
| Strand | - |
| Gene length (bp) | 411 |
| Transcript length (bp) | 291 |
| Coding sequence length (bp) | 291 |
| Protein length (aa) | 97 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05160 | DSS1_SEM1 | DSS1/SEM1 family | 1.2E-23 | 12 | 82 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SA04|SEM1_NEUCR | Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sem-1 PE=3 SV=1 | 6 | 87 | 2.0E-07 |
| sp|O94742|SEM1_YEAST | 26S proteasome complex subunit SEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEM1 PE=1 SV=1 | 19 | 85 | 1.0E-06 |
| sp|O14140|DSS1_SCHPO | mRNA export factor dss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dss1 PE=1 SV=1 | 10 | 82 | 2.0E-06 |
| sp|P60897|DSS1_MOUSE | 26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1 | 58 | 90 | 3.0E-06 |
| sp|P60896|DSS1_HUMAN | 26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1 | 58 | 90 | 3.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q7SA04|SEM1_NEUCR | Putative 26S proteasome complex subunit sem-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sem-1 PE=3 SV=1 | 6 | 87 | 2.0E-07 |
| sp|O94742|SEM1_YEAST | 26S proteasome complex subunit SEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEM1 PE=1 SV=1 | 19 | 85 | 1.0E-06 |
| sp|O14140|DSS1_SCHPO | mRNA export factor dss1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dss1 PE=1 SV=1 | 10 | 82 | 2.0E-06 |
| sp|P60897|DSS1_MOUSE | 26S proteasome complex subunit DSS1 OS=Mus musculus GN=Shfm1 PE=3 SV=1 | 58 | 90 | 3.0E-06 |
| sp|P60896|DSS1_HUMAN | 26S proteasome complex subunit DSS1 OS=Homo sapiens GN=SHFM1 PE=1 SV=1 | 58 | 90 | 3.0E-06 |
| sp|Q3ZBR6|DSS1_BOVIN | 26S proteasome complex subunit DSS1 OS=Bos taurus GN=SHFM1 PE=3 SV=1 | 58 | 90 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043248 | proteasome assembly | Yes |
| GO:0008541 | proteasome regulatory particle, lid subcomplex | Yes |
| GO:0006406 | mRNA export from nucleus | Yes |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0051179 | localization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0051641 | cellular localization | No |
| GO:0032991 | protein-containing complex | No |
| GO:0051236 | establishment of RNA localization | No |
| GO:0071705 | nitrogen compound transport | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0051028 | mRNA transport | No |
| GO:0006913 | nucleocytoplasmic transport | No |
| GO:0046907 | intracellular transport | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0006810 | transport | No |
| GO:0050658 | RNA transport | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0071702 | organic substance transport | No |
| GO:0015931 | nucleobase-containing compound transport | No |
| GO:0006405 | RNA export from nucleus | No |
| GO:0051234 | establishment of localization | No |
| GO:0051168 | nuclear export | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0051169 | nuclear transport | No |
| GO:0008150 | biological_process | No |
| GO:0016043 | cellular component organization | No |
| GO:0050657 | nucleic acid transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|081110 MSASDSKEQKAENPTLSVLEEDDEFEEFAVADWDDSQTDLAHLGGAAPGAAKSGGDKLWEDNWDDDDVEEDFSIQ LRSELEKTKKAKEATGESMQT* |
| Coding | >Agabi119p4|081110 ATGTCCGCTTCAGATTCAAAGGAACAGAAAGCAGAGAACCCTACTCTCAGTGTTTTAGAAGAGGATGATGAATTT GAAGAGTTCGCAGTCGCAGACTGGGATGATTCACAAACAGACTTAGCACACCTTGGAGGTGCTGCACCAGGAGCA GCTAAATCAGGTGGAGATAAGTTATGGGAAGATAATTGGGATGATGATGATGTTGAAGAAGATTTCAGTATACAA CTTCGAAGTGAACTGGAGAAGACTAAAAAAGCGAAGGAAGCCACTGGCGAAAGTATGCAAACTTGA |
| Transcript | >Agabi119p4|081110 ATGTCCGCTTCAGATTCAAAGGAACAGAAAGCAGAGAACCCTACTCTCAGTGTTTTAGAAGAGGATGATGAATTT GAAGAGTTCGCAGTCGCAGACTGGGATGATTCACAAACAGACTTAGCACACCTTGGAGGTGCTGCACCAGGAGCA GCTAAATCAGGTGGAGATAAGTTATGGGAAGATAATTGGGATGATGATGATGTTGAAGAAGATTTCAGTATACAA CTTCGAAGTGAACTGGAGAAGACTAAAAAAGCGAAGGAAGCCACTGGCGAAAGTATGCAAACTTGA |
| Gene | >Agabi119p4|081110 ATGTCCGCTTCAGATTCAAAGGAACAGAAAGCAGAGAACCCTACTCTCAGTGTTTTAGAAGAGGATGATGAATTT GAAGAGTTCGCAGTCGCAGGTGAACACGAGTGAATCCGCGACCTTAAAGACGCTTAAGCTAATACTTTTTGCTCC ATAGACTGGGATGATTCACAAACAGACTTAGCACACCTTGGAGGTGCTGCACCAGGAGCAGCTAAATCAGGTGGA GATAAGTTATGGGAAGATAATTGGGATGATGATGATGTTGAAGAAGATTTCAGTATACAACTTCGGTGCGTCTTC AACATCTTCCATTCGCTTGTGCGCGCGATTAACCGATCATCTTGTTGCAGAAGTGAACTGGAGAAGACTAAAAAA GCGAAGGAAGCCACTGGCGAAAGTATGCAAACTTGA |