© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|080160 |
| Gene name | |
| Location | scaffold_05a:524338..525618 |
| Strand | + |
| Gene length (bp) | 1280 |
| Transcript length (bp) | 936 |
| Coding sequence length (bp) | 936 |
| Protein length (aa) | 312 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 2.0E-35 | 155 | 311 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94511|YN67_SCHPO | Putative enoyl reductase C646.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC646.07c PE=3 SV=1 | 4 | 311 | 2.0E-72 |
| sp|Q55C17|TECR_DICDI | Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 | 54 | 311 | 7.0E-58 |
| sp|Q9N5Y2|TECR_CAEEL | Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1 | 30 | 311 | 4.0E-57 |
| sp|Q9NZ01|TECR_HUMAN | Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1 | 28 | 311 | 2.0E-53 |
| sp|Q9M2U2|TECR_ARATH | Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=1 SV=1 | 23 | 308 | 3.0E-53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O94511|YN67_SCHPO | Putative enoyl reductase C646.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC646.07c PE=3 SV=1 | 4 | 311 | 2.0E-72 |
| sp|Q55C17|TECR_DICDI | Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 | 54 | 311 | 7.0E-58 |
| sp|Q9N5Y2|TECR_CAEEL | Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1 | 30 | 311 | 4.0E-57 |
| sp|Q9NZ01|TECR_HUMAN | Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1 | 28 | 311 | 2.0E-53 |
| sp|Q9M2U2|TECR_ARATH | Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=1 SV=1 | 23 | 308 | 3.0E-53 |
| sp|Q3ZCD7|TECR_BOVIN | Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1 | 26 | 311 | 5.0E-53 |
| sp|Q64232|TECR_RAT | Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1 | 26 | 311 | 1.0E-52 |
| sp|Q9CY27|TECR_MOUSE | Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1 | 26 | 311 | 5.0E-52 |
| sp|Q99190|TECR_YEAST | Very-long-chain enoyl-CoA reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSC13 PE=1 SV=1 | 22 | 311 | 7.0E-39 |
| sp|Q5HYJ1|TECRL_HUMAN | Trans-2,3-enoyl-CoA reductase-like OS=Homo sapiens GN=TECRL PE=2 SV=1 | 14 | 311 | 1.0E-33 |
| sp|Q8BFZ1|TECRL_MOUSE | Trans-2,3-enoyl-CoA reductase-like OS=Mus musculus GN=Tecrl PE=1 SV=1 | 24 | 311 | 2.0E-33 |
| sp|Q3SZ89|TECRL_BOVIN | Trans-2,3-enoyl-CoA reductase-like OS=Bos taurus GN=TECRL PE=2 SV=1 | 14 | 311 | 1.0E-29 |
| sp|Q8AVI9|PORED_XENLA | Polyprenol reductase OS=Xenopus laevis GN=srd5a3 PE=2 SV=1 | 131 | 310 | 1.0E-11 |
| sp|A5PJS2|S5A1_BOVIN | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos taurus GN=SRD5A1 PE=2 SV=1 | 132 | 311 | 4.0E-11 |
| sp|P18405|S5A1_HUMAN | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Homo sapiens GN=SRD5A1 PE=1 SV=1 | 132 | 310 | 6.0E-10 |
| sp|Q0P4J9|PORED_XENTR | Polyprenol reductase OS=Xenopus tropicalis GN=srd5a3 PE=2 SV=1 | 132 | 310 | 1.0E-09 |
| sp|Q68FF9|S5A1_MOUSE | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus GN=Srd5a1 PE=2 SV=2 | 127 | 311 | 2.0E-09 |
| sp|P24008|S5A1_RAT | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus GN=Srd5a1 PE=1 SV=2 | 86 | 311 | 2.0E-09 |
| sp|P31214|S5A2_RAT | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Rattus norvegicus GN=Srd5a2 PE=1 SV=1 | 217 | 310 | 2.0E-09 |
| sp|Q28892|S5A2_MACFA | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Macaca fascicularis GN=SRD5A2 PE=1 SV=1 | 217 | 310 | 6.0E-09 |
| sp|Q28891|S5A1_MACFA | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1 | 194 | 310 | 7.0E-09 |
| sp|Q2QDF6|DET2_GOSHI | Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum GN=DET2 PE=1 SV=1 | 194 | 310 | 9.0E-09 |
| sp|Q99N99|S5A2_MOUSE | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Mus musculus GN=Srd5a2 PE=2 SV=1 | 217 | 310 | 1.0E-08 |
| sp|P31213|S5A2_HUMAN | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Homo sapiens GN=SRD5A2 PE=1 SV=1 | 217 | 310 | 2.0E-08 |
| sp|Q5K2N1|DET2_SOLLC | Steroid 5-alpha-reductase DET2 OS=Solanum lycopersicum GN=DET2 PE=1 SV=1 | 215 | 310 | 3.0E-08 |
| sp|O18765|S5A2_PIG | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Sus scrofa GN=SRD5A2 PE=2 SV=2 | 217 | 310 | 4.0E-08 |
| sp|Q38944|DET2_ARATH | Steroid 5-alpha-reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=1 SV=2 | 217 | 310 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 258 | 280 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|080160 MVNISISAASRPPQFAKNWPIQIDIPQHGTIADVKKAIFLKYPKFYASRQKVTLKDDRKPLADDQELASVLGSKF EGSELQVKDLGPQIGWRTVFFIEYVGPLLIHPLFYYFPKVWYGKAVEHSMLQKYVYAMVMLHFVKRELETLFVHR FSNGTMPFMNVFKNSGHYHILSGLLLACDIYRPKYSATSPSILDTYRNNKDFLYIAAGLWAFAELSNFHTHMTLR GLRPPGTRTRAIPYGYGFSLVSCPNYFFEVMGWVVIAVMTNSIAAYIFVAFSAYIMTVWAVKKHRNYRKEFGKEY PRRNAIWPFVL* |
| Coding | >Agabi119p4|080160 ATGGTCAACATCAGCATTTCTGCAGCCTCGAGGCCACCTCAATTTGCCAAGAACTGGCCTATACAGATTGATATA CCCCAACATGGAACCATTGCCGACGTGAAAAAGGCTATTTTCCTCAAATACCCAAAGTTCTACGCCTCGAGACAA AAGGTTACTCTGAAGGATGATAGGAAACCCTTGGCGGATGATCAGGAGTTGGCTTCTGTGCTTGGAAGCAAGTTT GAGGGATCTGAATTGCAGGTCAAGGATTTGGGTCCTCAGATTGGCTGGAGGACCGTGTTTTTCATTGAATACGTT GGGCCACTCCTTATTCACCCACTTTTCTATTACTTCCCGAAAGTGTGGTATGGGAAAGCTGTGGAGCATAGCATG CTGCAGAAATATGTGTATGCGATGGTGATGCTACATTTCGTCAAGCGGGAGCTCGAAACTTTGTTTGTTCACCGG TTTTCAAATGGCACCATGCCGTTTATGAATGTTTTCAAAAATTCTGGCCATTATCATATTTTGAGTGGACTGCTA CTCGCGTGTGACATATATCGTCCGAAATACTCGGCCACTTCGCCTTCTATACTGGATACCTACCGGAACAACAAA GATTTCTTATATATCGCTGCTGGACTATGGGCTTTTGCTGAACTCTCTAATTTTCATACTCACATGACTTTGCGA GGCCTTCGTCCTCCTGGCACTCGAACTCGTGCCATTCCTTATGGATATGGATTTTCTTTGGTCTCTTGTCCAAAT TACTTCTTCGAAGTGATGGGCTGGGTGGTTATCGCCGTAATGACAAATAGTATCGCAGCATACATATTTGTCGCG TTTTCAGCGTATATTATGACGGTGTGGGCAGTGAAGAAACACAGGAACTACAGAAAGGAGTTTGGGAAGGAGTAT CCGCGCCGGAATGCGATCTGGCCGTTTGTGTTGTAG |
| Transcript | >Agabi119p4|080160 ATGGTCAACATCAGCATTTCTGCAGCCTCGAGGCCACCTCAATTTGCCAAGAACTGGCCTATACAGATTGATATA CCCCAACATGGAACCATTGCCGACGTGAAAAAGGCTATTTTCCTCAAATACCCAAAGTTCTACGCCTCGAGACAA AAGGTTACTCTGAAGGATGATAGGAAACCCTTGGCGGATGATCAGGAGTTGGCTTCTGTGCTTGGAAGCAAGTTT GAGGGATCTGAATTGCAGGTCAAGGATTTGGGTCCTCAGATTGGCTGGAGGACCGTGTTTTTCATTGAATACGTT GGGCCACTCCTTATTCACCCACTTTTCTATTACTTCCCGAAAGTGTGGTATGGGAAAGCTGTGGAGCATAGCATG CTGCAGAAATATGTGTATGCGATGGTGATGCTACATTTCGTCAAGCGGGAGCTCGAAACTTTGTTTGTTCACCGG TTTTCAAATGGCACCATGCCGTTTATGAATGTTTTCAAAAATTCTGGCCATTATCATATTTTGAGTGGACTGCTA CTCGCGTGTGACATATATCGTCCGAAATACTCGGCCACTTCGCCTTCTATACTGGATACCTACCGGAACAACAAA GATTTCTTATATATCGCTGCTGGACTATGGGCTTTTGCTGAACTCTCTAATTTTCATACTCACATGACTTTGCGA GGCCTTCGTCCTCCTGGCACTCGAACTCGTGCCATTCCTTATGGATATGGATTTTCTTTGGTCTCTTGTCCAAAT TACTTCTTCGAAGTGATGGGCTGGGTGGTTATCGCCGTAATGACAAATAGTATCGCAGCATACATATTTGTCGCG TTTTCAGCGTATATTATGACGGTGTGGGCAGTGAAGAAACACAGGAACTACAGAAAGGAGTTTGGGAAGGAGTAT CCGCGCCGGAATGCGATCTGGCCGTTTGTGTTGTAG |
| Gene | >Agabi119p4|080160 ATGGTCAACATCAGCATTTCTGCAGCCTCGAGGCCACCTCAATTTGCCAAGAACTGGCCTATACAGATTGATATA CCCCAACATGGAACCATTGCCGACGTGAAAAAGGCTATTTTCCTCAAATACCCAAAGGTATGAGCGTCATCCTCT GAAAATTAAACTGCGTTTTAATAGAGCTACTTCTTTTCTAGTTCTACGCCTCGAGACAAAAGGTTACTCTGAAGG ATGATAGGAAACCCTTGGCGGATGATCAGGAGTTGGCTTCTGTGCTTGGAAGCAAGTTTGAGGGATCTGAATTGC AGGTCAAGGATTTGGGTCCTCAGATTGGCTGGAGGACCGTGTTTTTCATTGAATACGTGTGTTATTCAGCCTTCC CTCTCCCGGATAGGTGGTATATTGACGCGGGATTATTTCAGGTTGGGCCACTCCTTATTCACCCACTTTTCTATT ACTTCCCGAAAGTGTGGTATGGGAAAGCTGTGGAGCATAGCATGCTGCAGAAATATGTGTATGCGATGGTGATGC TACATTTCGTCAAGCGGGAGCTCGAAACTTTGTTGTAAGTCGTTCTGACTCATTACTCGAAAAGTTGACGCGTGT ATAACCTCTTTGCCCCGACAGTGTTCACCGGTTTTCAAATGGCACCATGCCGTTTATGAATGTTTTCAAAAAGTG GGCTTTCAGTATTCTTTGTATTTCCGAGTACTCATTCGATTGCGGTTGTGATTCAGTTCTGGCCATTATCATATT TTGAGTGGACTGCTACTCGCGTGTGACATATATCGTCCGAAATACTCGGCCACTTCGCCTTCTATACTGGATACC TACCGGAACAACAAAGATTTCTTATATATCGCTGCTGGACTATGGGCTGTGGGTATCTGACGTTATTTCATCCAC ATGTCATTGACTCTTTCAACAGTTTGCTGAACTCTCTAATTTTCATACTCACATGACTTTGCGAGGCCTTCGTCC TCCTGGCACTCGAACTCGTGCCATTCCTTATGGATATGGATTTTCTTTGGTCTCTTGTCCAAATTACTTCTTCGA AGTGATGGGCTGGGTGGTTATCGCCGTAATGACAAATAGTATCGCAGGTAAAATTTTTTTGCATCTTACGATACG GCGTTATTAATGCTGATCCCTTTATAGCATACATATTTGTCGCGTTTTCAGCGTATATTATGACGGTGTGGGCAG TGAAGAAACACAGGAACTACAGAAAGGAGTTTGGGAAGGAGTATCCGCGCCGGAATGCGATCTGGCCGTTTGTGT TGTAG |