Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|077130
Gene name
Locationscaffold_04:2643074..2644664
Strand+
Gene length (bp)1590
Transcript length (bp)1239
Coding sequence length (bp)1239
Protein length (aa) 413

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 1.2E-03 57 98
PF00400 WD40 WD domain, G-beta repeat 5.2E-02 314 351

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9D0R9|WDR89_MOUSE WD repeat-containing protein 89 OS=Mus musculus GN=Wdr89 PE=2 SV=1 47 351 1.0E-24
sp|Q5FVP5|WDR89_RAT WD repeat-containing protein 89 OS=Rattus norvegicus GN=Wdr89 PE=2 SV=1 47 351 2.0E-23
sp|Q3ZBK1|WDR89_BOVIN WD repeat-containing protein 89 OS=Bos taurus GN=WDR89 PE=2 SV=1 47 351 1.0E-22
sp|Q5RBZ3|WDR89_PONAB WD repeat-containing protein 89 OS=Pongo abelii GN=WDR89 PE=2 SV=1 25 351 2.0E-22
sp|Q96FK6|WDR89_HUMAN WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=2 SV=1 25 351 2.0E-22
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Swissprot ID Swissprot Description Start End E-value
sp|Q9D0R9|WDR89_MOUSE WD repeat-containing protein 89 OS=Mus musculus GN=Wdr89 PE=2 SV=1 47 351 1.0E-24
sp|Q5FVP5|WDR89_RAT WD repeat-containing protein 89 OS=Rattus norvegicus GN=Wdr89 PE=2 SV=1 47 351 2.0E-23
sp|Q3ZBK1|WDR89_BOVIN WD repeat-containing protein 89 OS=Bos taurus GN=WDR89 PE=2 SV=1 47 351 1.0E-22
sp|Q5RBZ3|WDR89_PONAB WD repeat-containing protein 89 OS=Pongo abelii GN=WDR89 PE=2 SV=1 25 351 2.0E-22
sp|Q96FK6|WDR89_HUMAN WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=2 SV=1 25 351 2.0E-22
sp|P53962|YND5_YEAST Uncharacterized WD repeat-containing protein YNL035C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL035C PE=1 SV=1 46 377 8.0E-20
sp|Q54QU5|WDR89_DICDI WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=3 SV=1 24 353 1.0E-19
sp|Q9Y7T2|YCJ6_SCHPO Uncharacterized WD repeat-containing protein C63.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC63.06 PE=3 SV=1 20 249 3.0E-14
sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=1 SV=1 47 192 2.0E-06
sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1 47 192 3.0E-06
sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=3 SV=1 83 197 4.0E-06
sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1 85 269 6.0E-06
sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=3 SV=1 21 359 6.0E-06
sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1 47 192 7.0E-06
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 38 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|077130
MQPSASLCEARWPLASTHLNHADAYVLSLATLPTSYAASASSPSHKIDLFDKSSLRLIQSLPGHHVATTSVRAVD
HILGAPTRTLISTGKDGSVKIWDERSGSHSIKLTNLGNTSLGLLSCDASPTGDLIAAGSEFQGQDSFILYWDPRQ
PAVPIRTHSSTHSDDITTLSFHPSAFSPPLLLSGSSDGLLSISNAIEDDEDETVIHVGAWGPSVSQSGWYTHPDN
NTSLGIWAASDMETFSLWSDQLDQRYSVDIRNPSVHTTTRTWVTDYLISCYPSNNGGIKVYTGSNEGDAALISPP
TLSSPTNALGNWTLHSLWTGNHIGIVRSILPDEENKVIITGGEDGKIHLWKDDSLFDMMGMVDIQDNLDDQDVDM
DMDTHLDRSIWMRNGRKRERDEGEESAGKKARFYREG*
Coding >Agabi119p4|077130
ATGCAGCCATCTGCGTCTCTGTGCGAGGCTCGCTGGCCCTTGGCCTCCACCCACCTCAACCACGCTGACGCCTAC
GTGCTCTCGCTTGCTACTCTCCCCACCTCCTATGCCGCTTCCGCATCCTCTCCCTCCCACAAAATAGATCTCTTC
GATAAATCCTCTCTCCGTTTAATACAATCTCTACCCGGACACCATGTCGCCACAACCTCCGTGCGCGCAGTCGAT
CACATACTAGGTGCTCCAACAAGAACTTTGATTTCTACTGGAAAAGACGGTTCTGTCAAAATATGGGATGAACGA
TCAGGCTCGCATTCTATCAAATTGACGAATTTGGGGAATACGTCGCTCGGTCTTTTAAGTTGCGATGCGTCTCCA
ACTGGAGACCTCATAGCAGCAGGCTCAGAATTTCAAGGTCAAGACTCCTTCATCTTATATTGGGATCCACGTCAA
CCCGCCGTTCCTATTCGAACCCATTCTTCAACACACTCAGATGACATCACCACTCTATCCTTCCATCCATCTGCT
TTCTCTCCTCCTCTCCTCCTCTCCGGCTCATCCGATGGTCTTCTCAGTATATCCAACGCTATAGAAGATGATGAA
GATGAAACTGTGATCCATGTCGGTGCTTGGGGTCCTAGTGTTTCGCAATCGGGATGGTATACTCATCCTGATAAT
AATACATCCTTGGGGATTTGGGCTGCCAGTGATATGGAAACTTTCAGTCTTTGGTCAGATCAGTTGGATCAACGA
TATTCAGTAGACATTCGTAATCCATCGGTACATACTACCACTCGGACTTGGGTTACAGATTATCTCATCTCATGT
TATCCCTCAAATAACGGAGGCATCAAAGTATACACTGGTTCCAACGAGGGGGATGCTGCGTTGATTTCACCACCA
ACATTATCATCTCCAACAAACGCTCTTGGAAATTGGACACTTCACTCTTTATGGACTGGTAACCACATTGGTATC
GTCCGTTCAATATTACCGGACGAAGAAAATAAAGTCATTATTACAGGAGGCGAAGATGGAAAAATTCATTTATGG
AAAGATGATAGTTTGTTTGATATGATGGGCATGGTGGACATTCAAGATAATTTGGATGATCAAGATGTTGATATG
GATATGGATACACATTTGGATCGATCGATTTGGATGAGGAATGGGAGGAAGAGGGAGAGGGATGAGGGTGAAGAA
TCGGCTGGAAAAAAAGCACGATTTTATCGAGAAGGCTGA
Transcript >Agabi119p4|077130
ATGCAGCCATCTGCGTCTCTGTGCGAGGCTCGCTGGCCCTTGGCCTCCACCCACCTCAACCACGCTGACGCCTAC
GTGCTCTCGCTTGCTACTCTCCCCACCTCCTATGCCGCTTCCGCATCCTCTCCCTCCCACAAAATAGATCTCTTC
GATAAATCCTCTCTCCGTTTAATACAATCTCTACCCGGACACCATGTCGCCACAACCTCCGTGCGCGCAGTCGAT
CACATACTAGGTGCTCCAACAAGAACTTTGATTTCTACTGGAAAAGACGGTTCTGTCAAAATATGGGATGAACGA
TCAGGCTCGCATTCTATCAAATTGACGAATTTGGGGAATACGTCGCTCGGTCTTTTAAGTTGCGATGCGTCTCCA
ACTGGAGACCTCATAGCAGCAGGCTCAGAATTTCAAGGTCAAGACTCCTTCATCTTATATTGGGATCCACGTCAA
CCCGCCGTTCCTATTCGAACCCATTCTTCAACACACTCAGATGACATCACCACTCTATCCTTCCATCCATCTGCT
TTCTCTCCTCCTCTCCTCCTCTCCGGCTCATCCGATGGTCTTCTCAGTATATCCAACGCTATAGAAGATGATGAA
GATGAAACTGTGATCCATGTCGGTGCTTGGGGTCCTAGTGTTTCGCAATCGGGATGGTATACTCATCCTGATAAT
AATACATCCTTGGGGATTTGGGCTGCCAGTGATATGGAAACTTTCAGTCTTTGGTCAGATCAGTTGGATCAACGA
TATTCAGTAGACATTCGTAATCCATCGGTACATACTACCACTCGGACTTGGGTTACAGATTATCTCATCTCATGT
TATCCCTCAAATAACGGAGGCATCAAAGTATACACTGGTTCCAACGAGGGGGATGCTGCGTTGATTTCACCACCA
ACATTATCATCTCCAACAAACGCTCTTGGAAATTGGACACTTCACTCTTTATGGACTGGTAACCACATTGGTATC
GTCCGTTCAATATTACCGGACGAAGAAAATAAAGTCATTATTACAGGAGGCGAAGATGGAAAAATTCATTTATGG
AAAGATGATAGTTTGTTTGATATGATGGGCATGGTGGACATTCAAGATAATTTGGATGATCAAGATGTTGATATG
GATATGGATACACATTTGGATCGATCGATTTGGATGAGGAATGGGAGGAAGAGGGAGAGGGATGAGGGTGAAGAA
TCGGCTGGAAAAAAAGCACGATTTTATCGAGAAGGCTGA
Gene >Agabi119p4|077130
ATGCAGCCATCTGCGTCTCTGTGCGAGGCTCGCTGGCCCTTGGCCTCCACCCACCTCAACCACGCTGACGCCTAC
GTGCTCTCGCTTGCTACTCTCCCCACCTCCTATGCCGCTTCCGCATCCTCTCCCTCCCACAAAATAGATCTCTTC
GATAAATCCTCTCTCCGTTTAATACAATCTCTACCCGGACACCATGTCGCCACAACCTCCGTGCGCGCAGTCGAT
CACATACTAGGTGCTCCAACAAGAACTTTGATTTCTACTGGAAAAGACGGTTCTGTCAAAATATGGGATGAACGA
TCAGGCTCGCATTCTATCAAATGTATGTTCTTGTCTAATATGTGCGCCTTACTTTTTTTATTTTACAAAGTGACG
AATTTGGGGAATACGTCGCTCGGTCTTTTAAGTTGCGATGCGTCTCCAACTGGAGACCTCATAGCAGCAGGCTCA
GAATTTCAAGGTCAAGACTCCTTCATCTTATATTGGTATGTCGCCCCATCCAATCCATCCTACCACACCTCAACA
ACTAACAGGGATCCACGTCAACCCGCCGTTCCTATTCGAACCCATTCTTCAACACACTCAGATGACATCACCACT
CTATCCTTCCATCCATCTGCTTTCTCTCCTCCTCTCCTCCTCTCCGGCTCATCCGATGGTCTTCTCAGTATATCC
AACGCTATAGAAGATGATGAAGATGAAACTGTGATCCATGTCGGTGCTTGGGGTCCTAGTGTTTCGCAATCGGGA
TGGTATACTCATCCTGATAATAATACATCCTTGGGGATTTGGGCTGCCAGTGATATGGAAACTTTCAGTCTTTGG
TCAGATCAGGTTCGAAAGAATTTATCTCTTTTTTCTAAAATAGAGTTAGTTAATTATTTCACCCCCCCGCAGTTG
GATCAACGATATTCAGTAGACATTCGTAATCCATCGGTACATACTACCACTCGGACTTGGGTTACAGATTATCTC
ATCTCATGTTATCCCTCAAATAACGGAGGCATCAAAGTATACACTGGTTCCAACGAGTGAGTTTTTTTTTTTTAC
ACAATTCTTAAAAATCTCATTATTTAAATTTTTCCTATTAGGGGGGATGCTGCGTTGATTTCACCACCAACATTA
TCATCTCCAACAAACGCTCTTGGAAATTGGACACTTCACTCTTTATGGACTGGTAACCACATTGGTATCGTCCGT
TCAATATTACCGGACGAAGAAGTAAGGCCATTTACCTTTAAATCTACTTTTTTTTTTTCGCTAATATATATATGT
TTTTATGATAAAGAATAAAGTCATTATTACAGGAGGCGAAGATGGAAAAATTCATTTATGGAAAGATGATAGTTT
GTTTGATATGATGGGCATGGTGGACATTCAAGATAATTTGGATGATCAAGATGTTGATATGGATATGGATACACA
TTTGGATCGATCGATTTGGATGAGGAATGGGAGGAAGAGGGAGAGGGATGAGGGTGAAGAATCGGTAAGGGAAAT
TCTTTTGATTTGTTACAGTATTTTTTTTTACTTAATACGGTTTACTGTTTTTAGGCTGGAAAAAAAGCACGATTT
TATCGAGAAGGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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