Protein ID | Agabi119p4|076520 |
Gene name | |
Location | scaffold_04:2489122..2492592 |
Strand | + |
Gene length (bp) | 3470 |
Transcript length (bp) | 2805 |
Coding sequence length (bp) | 2805 |
Protein length (aa) | 935 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08711 | Med26 | TFIIS helical bundle-like domain | 3.0E-08 | 400 | 450 |
PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 1.3E-06 | 908 | 931 |
PF18044 | zf-CCCH_4 | CCCH-type zinc finger | 1.3E-05 | 910 | 931 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q6GLQ4|PP1RA_XENLA | Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Xenopus laevis GN=ppp1r10 PE=2 SV=1 | 595 | 712 | 6.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0043169 | cation binding | No |
GO:0043167 | ion binding | No |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 38 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|076520 MDPIFHWVSQPSMLPESSQHESQRQTQSSLDDWAKERPAAMPQTGSIGVGSSSAANSMDISDFTTLGELGGEPMP TNSQQSAPSLLSSPQTFYSQLTQSHNQFFLPSYPTLAYGNSTWPPIPLSNYSTLNGATISSNSTASQPTQQQSPP PNSPPAQQSQSTHVGQQQNSTVQSQPPESTNHHQPLMIDPALTLPGSNPNLQPYGSIFASQPQRQQYPFTHFIPS SYYRQASTATSQGTLSPQALMNPSSLLTSISPASFYGTQSSTTQSDSQTSQPSSTLQNQPQSTLQTQPQPLEPSP EEIAQRKARFYTSVKPLLHSSAFSGAQAVNTLVERIMSNIHEADPSIRLEILTKIRDGAGNHYFRAWSENPRAMD ITREWLKAAYSADDDSPLLETIMPLLHIIDRLPLTVESLRASKLGKLVVKLVKDPPSPAIKDMASNIERRWRQLV SGGEGPPNAPSASSAEDPKVKKRKSDPLNIKSLPPQKKQAISNSAMKPSAAREPKDKPKPISNTAAVKDAKSDSS FFSAPKPKPKLPSFKKAPVPAMVKKEENVAQPSSVDPFQEVLRTMKARKESPVVSTPPAAVNTPPQTNSLSRNGK KKKSVTWAPDSQLESVKLIERAVYDDEPPEGMHMAHSLRDLDRGEGAALHAHLFEETVDWLEPSMLEIPPDIEVP VRGEGSQEKATQEQREQTALSAVYMTAQMIPDSPAEPVVILPEEEVDKDVVTMICGESDSIFWSDGVPVEPVSHT ASVADLVGQLASGSGVDPALGGTHFNGQGLDLKSVGLDTSATLSAVSALPQEQLQQLLQQLASYGSPGSNPSPPS SASYNNIDPTWGTGSNQYSNDYGQNYHEDNNEREAWPPNGPKGRGRGRSSGRGRGRGRGGGGNGSNGGGGNGGGE EYRQQPNKRKPCSFFAAGKCRFGDQCDFAHDVAS* |
Coding | >Agabi119p4|076520 ATGGATCCTATTTTTCACTGGGTCTCCCAGCCCTCGATGCTGCCAGAGTCCTCTCAGCATGAATCGCAGAGGCAG ACCCAGTCATCCCTCGATGACTGGGCAAAAGAGCGCCCGGCTGCCATGCCCCAAACGGGCTCTATCGGCGTCGGC TCCTCTTCGGCCGCAAACAGCATGGACATTAGCGATTTCACCACTCTCGGAGAATTGGGAGGTGAGCCTATGCCA ACAAATTCGCAGCAGTCCGCCCCTTCCCTGCTGTCCTCGCCCCAGACGTTCTACTCCCAGCTCACCCAATCCCAC AACCAATTCTTTTTGCCATCCTACCCCACGCTTGCCTATGGCAACTCGACCTGGCCACCCATTCCCCTTTCCAAC TACTCGACTCTCAACGGCGCGACCATCTCGTCCAATTCGACCGCGTCGCAACCCACTCAGCAGCAATCACCTCCA CCCAACTCCCCTCCCGCACAACAATCACAATCCACTCACGTTGGCCAGCAGCAAAACTCGACGGTCCAGTCACAG CCGCCAGAGTCGACCAACCATCATCAGCCTCTCATGATCGATCCAGCGTTGACGTTACCAGGATCCAATCCCAAT TTACAACCTTATGGATCCATCTTTGCTTCCCAGCCACAACGCCAGCAATATCCCTTTACGCACTTTATTCCCTCT TCTTACTATCGCCAAGCTTCGACCGCCACGTCTCAAGGAACTCTGTCTCCTCAAGCATTGATGAACCCGAGTTCC CTTTTGACCTCGATTAGTCCGGCATCATTTTATGGCACTCAGTCTTCAACTACTCAATCAGATTCGCAAACGTCT CAACCATCATCAACATTGCAAAATCAACCACAATCTACGTTGCAAACCCAACCTCAACCTCTCGAACCGTCTCCC GAGGAGATCGCACAGAGGAAAGCGCGGTTTTATACGTCGGTCAAACCGTTACTGCATTCTTCGGCTTTTTCAGGA GCCCAGGCCGTCAACACTTTAGTAGAGCGAATTATGAGCAATATCCATGAGGCTGACCCTTCTATACGACTGGAA ATATTGACGAAGATCCGGGACGGTGCAGGTAACCATTATTTTAGGGCTTGGTCTGAAAACCCGCGTGCAATGGAT ATTACACGAGAGTGGCTTAAAGCTGCATACTCTGCTGATGATGATAGTCCTCTACTTGAAACGATCATGCCACTA CTGCATATCATCGATCGATTGCCTTTAACGGTAGAAAGCCTCAGAGCCTCAAAGCTGGGCAAACTTGTAGTGAAG CTTGTAAAAGATCCGCCCTCTCCAGCCATCAAGGACATGGCCTCGAATATCGAACGCCGATGGCGTCAGCTTGTC AGCGGTGGTGAAGGGCCACCTAATGCCCCTAGCGCCAGCTCGGCAGAGGACCCAAAAGTGAAGAAACGAAAAAGC GATCCACTCAATATCAAGTCTCTCCCGCCGCAGAAAAAACAGGCAATTTCAAATTCGGCAATGAAACCTTCGGCT GCAAGAGAACCCAAAGACAAACCAAAGCCTATATCAAACACTGCCGCTGTCAAGGATGCCAAGTCCGATTCGTCT TTCTTTTCAGCACCCAAACCCAAGCCAAAATTGCCCAGTTTTAAGAAAGCACCGGTGCCTGCGATGGTCAAGAAG GAGGAGAATGTTGCGCAGCCGTCGTCGGTAGATCCGTTCCAAGAAGTTCTCAGGACGATGAAGGCTCGAAAGGAG TCACCTGTCGTATCGACACCGCCTGCAGCTGTGAATACACCTCCGCAGACAAATAGTCTTTCGAGAAATGGTAAA AAGAAGAAATCTGTGACTTGGGCACCTGATTCCCAACTTGAATCGGTGAAGCTAATTGAACGGGCGGTCTATGAT GATGAACCTCCAGAGGGAATGCATATGGCCCACAGCCTGCGTGATTTGGATCGAGGTGAAGGTGCAGCTCTTCAC GCACACTTGTTCGAGGAGACAGTGGATTGGTTGGAACCTTCAATGCTTGAAATACCCCCGGATATCGAAGTGCCG GTGCGTGGGGAAGGAAGTCAAGAGAAGGCGACGCAAGAGCAACGGGAACAGACAGCGCTCAGCGCTGTGTATATG ACGGCTCAAATGATCCCGGATAGTCCGGCGGAGCCTGTAGTCATTTTACCCGAAGAGGAAGTGGACAAGGATGTA GTGACGATGATTTGCGGGGAAAGTGACTCTATCTTCTGGAGTGACGGAGTGCCAGTTGAACCGGTATCCCACACT GCATCAGTGGCGGATCTAGTTGGACAATTGGCATCAGGGAGTGGTGTTGATCCCGCGTTAGGGGGTACTCACTTT AACGGTCAGGGATTGGATTTGAAATCAGTGGGCCTTGACACATCTGCTACTTTGTCTGCCGTATCTGCCTTACCA CAGGAGCAGCTACAACAGTTGCTCCAACAGTTAGCGTCGTATGGATCGCCCGGATCTAATCCATCACCACCATCA TCAGCATCATATAATAACATTGATCCGACATGGGGAACAGGGTCGAATCAGTATTCCAACGATTATGGACAAAAC TATCATGAGGACAACAATGAGCGAGAAGCATGGCCGCCAAATGGACCGAAGGGACGGGGGCGAGGGCGAAGTTCT GGACGTGGTCGGGGAAGGGGACGTGGCGGTGGTGGTAATGGGAGTAATGGAGGAGGAGGCAATGGCGGGGGAGAA GAGTATAGACAACAACCGAATAAACGAAAACCTTGCAGTTTCTTTGCGGCTGGAAAGTGTAGATTTGGCGACCAA TGTGATTTTGCCCATGACGTAGCCTCGTAG |
Transcript | >Agabi119p4|076520 ATGGATCCTATTTTTCACTGGGTCTCCCAGCCCTCGATGCTGCCAGAGTCCTCTCAGCATGAATCGCAGAGGCAG ACCCAGTCATCCCTCGATGACTGGGCAAAAGAGCGCCCGGCTGCCATGCCCCAAACGGGCTCTATCGGCGTCGGC TCCTCTTCGGCCGCAAACAGCATGGACATTAGCGATTTCACCACTCTCGGAGAATTGGGAGGTGAGCCTATGCCA ACAAATTCGCAGCAGTCCGCCCCTTCCCTGCTGTCCTCGCCCCAGACGTTCTACTCCCAGCTCACCCAATCCCAC AACCAATTCTTTTTGCCATCCTACCCCACGCTTGCCTATGGCAACTCGACCTGGCCACCCATTCCCCTTTCCAAC TACTCGACTCTCAACGGCGCGACCATCTCGTCCAATTCGACCGCGTCGCAACCCACTCAGCAGCAATCACCTCCA CCCAACTCCCCTCCCGCACAACAATCACAATCCACTCACGTTGGCCAGCAGCAAAACTCGACGGTCCAGTCACAG CCGCCAGAGTCGACCAACCATCATCAGCCTCTCATGATCGATCCAGCGTTGACGTTACCAGGATCCAATCCCAAT TTACAACCTTATGGATCCATCTTTGCTTCCCAGCCACAACGCCAGCAATATCCCTTTACGCACTTTATTCCCTCT TCTTACTATCGCCAAGCTTCGACCGCCACGTCTCAAGGAACTCTGTCTCCTCAAGCATTGATGAACCCGAGTTCC CTTTTGACCTCGATTAGTCCGGCATCATTTTATGGCACTCAGTCTTCAACTACTCAATCAGATTCGCAAACGTCT CAACCATCATCAACATTGCAAAATCAACCACAATCTACGTTGCAAACCCAACCTCAACCTCTCGAACCGTCTCCC GAGGAGATCGCACAGAGGAAAGCGCGGTTTTATACGTCGGTCAAACCGTTACTGCATTCTTCGGCTTTTTCAGGA GCCCAGGCCGTCAACACTTTAGTAGAGCGAATTATGAGCAATATCCATGAGGCTGACCCTTCTATACGACTGGAA ATATTGACGAAGATCCGGGACGGTGCAGGTAACCATTATTTTAGGGCTTGGTCTGAAAACCCGCGTGCAATGGAT ATTACACGAGAGTGGCTTAAAGCTGCATACTCTGCTGATGATGATAGTCCTCTACTTGAAACGATCATGCCACTA CTGCATATCATCGATCGATTGCCTTTAACGGTAGAAAGCCTCAGAGCCTCAAAGCTGGGCAAACTTGTAGTGAAG CTTGTAAAAGATCCGCCCTCTCCAGCCATCAAGGACATGGCCTCGAATATCGAACGCCGATGGCGTCAGCTTGTC AGCGGTGGTGAAGGGCCACCTAATGCCCCTAGCGCCAGCTCGGCAGAGGACCCAAAAGTGAAGAAACGAAAAAGC GATCCACTCAATATCAAGTCTCTCCCGCCGCAGAAAAAACAGGCAATTTCAAATTCGGCAATGAAACCTTCGGCT GCAAGAGAACCCAAAGACAAACCAAAGCCTATATCAAACACTGCCGCTGTCAAGGATGCCAAGTCCGATTCGTCT TTCTTTTCAGCACCCAAACCCAAGCCAAAATTGCCCAGTTTTAAGAAAGCACCGGTGCCTGCGATGGTCAAGAAG GAGGAGAATGTTGCGCAGCCGTCGTCGGTAGATCCGTTCCAAGAAGTTCTCAGGACGATGAAGGCTCGAAAGGAG TCACCTGTCGTATCGACACCGCCTGCAGCTGTGAATACACCTCCGCAGACAAATAGTCTTTCGAGAAATGGTAAA AAGAAGAAATCTGTGACTTGGGCACCTGATTCCCAACTTGAATCGGTGAAGCTAATTGAACGGGCGGTCTATGAT GATGAACCTCCAGAGGGAATGCATATGGCCCACAGCCTGCGTGATTTGGATCGAGGTGAAGGTGCAGCTCTTCAC GCACACTTGTTCGAGGAGACAGTGGATTGGTTGGAACCTTCAATGCTTGAAATACCCCCGGATATCGAAGTGCCG GTGCGTGGGGAAGGAAGTCAAGAGAAGGCGACGCAAGAGCAACGGGAACAGACAGCGCTCAGCGCTGTGTATATG ACGGCTCAAATGATCCCGGATAGTCCGGCGGAGCCTGTAGTCATTTTACCCGAAGAGGAAGTGGACAAGGATGTA GTGACGATGATTTGCGGGGAAAGTGACTCTATCTTCTGGAGTGACGGAGTGCCAGTTGAACCGGTATCCCACACT GCATCAGTGGCGGATCTAGTTGGACAATTGGCATCAGGGAGTGGTGTTGATCCCGCGTTAGGGGGTACTCACTTT AACGGTCAGGGATTGGATTTGAAATCAGTGGGCCTTGACACATCTGCTACTTTGTCTGCCGTATCTGCCTTACCA CAGGAGCAGCTACAACAGTTGCTCCAACAGTTAGCGTCGTATGGATCGCCCGGATCTAATCCATCACCACCATCA TCAGCATCATATAATAACATTGATCCGACATGGGGAACAGGGTCGAATCAGTATTCCAACGATTATGGACAAAAC TATCATGAGGACAACAATGAGCGAGAAGCATGGCCGCCAAATGGACCGAAGGGACGGGGGCGAGGGCGAAGTTCT GGACGTGGTCGGGGAAGGGGACGTGGCGGTGGTGGTAATGGGAGTAATGGAGGAGGAGGCAATGGCGGGGGAGAA GAGTATAGACAACAACCGAATAAACGAAAACCTTGCAGTTTCTTTGCGGCTGGAAAGTGTAGATTTGGCGACCAA TGTGATTTTGCCCATGACGTAGCCTCGTAG |
Gene | >Agabi119p4|076520 ATGGATCCTATTTTTCACTGGGTCTCCCAGCCCTCGATGCTGCCAGAGTCCTCTCAGCATGAATCGCAGAGGCAG ACCCAGTCATCCCTCGATGACTGGGCAAAAGAGCGCCCGGCTGCCATGCCCCAAACGGGCTCTATCGGCGTCGGC TCCTCTTCGGCCGCAAACAGCATGGACATTAGCGATTTCACCACTCTCGGAGAATTGGGAGGTGAGCCTATGCCA ACAAATTCGCAGCAGTGTACGCCTCAGTGTGCTGGCTGATCGCGCACCGTAAACTAACAATCTGCTACAGCCGCC CCTTCCCTGCTGTCCTCGCCCCAGACGTTCTACTCCCAGCTCACCCAATCCCACAACCAATTCTTTTTGCCATCC TACCCCACGCTTGCCTATGGCAACTCGACCTGGCCACCCATTCCCCTTTCCAACTACTCGACTCTCAACGGCGCG ACCATCTCGTCCAATTCGACCGCGTCGCAACCCACTCAGCAGCAATCACCTCCACCCAACTCCCCTCCCGCACAA CAATCACAATCCACTCACGTTGGCCAGCAGCAAAACTCGACGGTCCAGTCACAGCCGCCAGAGTCGACCAACCAT CATCAGCCTCTCATGATCGAGTATGTTCAAGCATCATTATAAATTTTTAGTGCCCTGATCCTCTCTTATAGTCCA GCGTTGACGTTACCAGGATCCAATCCCAATTTACAACCTTATGGATCCATCTTTGCTTCCCAGCCACAACGCCAG CAATATCCCTTTACGCACTTTATTCCCTCTTCTTACTATCGCCAAGCTTCGACCGCCACGTCTCAAGGAACTCTG TCTCCTCAAGCATTGATGAACCCGAGTTCCCTTTTGACCTCGATTAGTCCGGCATCATTTTATGGCACTCAGTCT TCAACTACTCAATCAGATTCGCAAACGTCTCAACCATCATCAACATTGCAAAATCAACCACAATCTACGTTGCAA ACCCAACCTCAACCTCTCGAACCGTCTCCCGAGGAGATCGCACAGAGGAAAGCGCGGTTTTATACGTCGGTCAAA CCGTTACTGCATTCTTCGGCTTTTTCAGGAGCCCAGGCCGTCAACACTTTAGTAGAGCGAATTATGAGCAATATC CATGAGGCTGACCCTTCTATACGACTGGAAATATTGACGAAGATCCGGGACGGTGCAGGTAACCATTATTTTAGG GCTTGGTCTGAAAACCCGCGTGCAATGGATATTACACGAGAGTGGCTTAAAGCTGCATACTCTGCTGATGATGAT AGTCCTCTACTTGAAACGATCATGCCACTACTGCATGTACGTGGCCAAGTTATCTTCTGTGATTGAGTGAAGCTG AATGAGCTGTTTGTTCGTTGTCTTTCAGATCATCGATCGATTGCCTTTAACGGTAGAAAGCCTCAGAGCCTCAAA GCTGGGCAAACTTGTAGTGAAGCTTGTAAAAGATCCGCCCTCTCCAGGTGAGTTGACGCGTCCTTCATCCATCCA GGTCAATATGTGTCTGCATGCACAGCTGCTCTTGTCCGAGCGTGAATTGAGATCGCCTCAAGCGTTATATTATGT GTTACTGCCTTTTTGCCTGGACTTTGAAAGGAGTAATAGAATAGATGTATCTAACGTTTTATCATGCTTTTTTTG GGGCCGCTCTACAAAATCGCAGCCATCAAGGACATGGCCTCGAATATCGAACGCCGATGGCGTCAGCTTGTCAGC GGTGGTGAAGGGCCACCTAATGCCCCTAGCGCCAGCTCGGCAGAGGGTGGGTCACGTTAGTCCGTCGTAATGAAT ACAACCGTTAAGCTGATATTCCCATATTCGTAGACCCAAAAGTGAAGAAACGAAAAAGCGATCCACTCAATATCA AGTCTCTCCCGCCGCAGAAAAAACAGGCAATTTCAAATTCGGCAATGAAACCTTCGGCTGCAAGAGAACCCAAAG ACAAACCAAAGCCTATATCAAACACTGCCGCTGTCAAGGATGCCAAGTCCGATTCGTCTTTCTTTTCAGCACCCA AACCCAAGCCAAAATTGCCCAGTTTTAAGAAAGCACCGGTGCCTGCGATGGTCAAGAAGGAGGAGAATGTTGCGC AGCCGTCGTCGGTAGATCCGTTCCAAGAAGTTCTCAGGACGATGAAGGCTCGAAAGGAGTCACCTGTCGTATCGA CACCGCCTGCAGCTGTGAATACACCTCCGCAGACAAATAGTCTTTCGAGAAATGGTAAAAAGAAGAAATCTGTGA CTTGGGCACCTGATTCCCAACTTGAATCGGTGAAGCTAATTGAACGGGCGGTCTATGATGATGAACCTCCAGAGG TCAGCCATTGCCCATTTCGATCAGGTCACGTGCTCGGAATGTTCTGATGTCGCTTTCTTAGGGAATGCATATGGC CCACAGCCTGCGTGATTTGGATCGAGGTGAAGGTGCAGCTCTTCACGCACACTTGTTCGAGGAGACAGTGGATTG GTTGGAACCTTCAAGTAAGTGCATTCCGTATAGTAGAGAATGTTACGGAACGGAAAGAACCGACTTTGATGTGCA GTGCTTGAAATACCCCCGGATATCGAAGTGCCGGTGCGTGGGGAAGGAAGTCAAGAGAAGGCGACGCAAGAGCAA CGGGAACAGACAGCGCTCAGCGCTGTGTATATGACGGCTCAAATGATCCCGGATAGTCCGGCGGAGCCTGTAGTC ATTTTACCCGAAGAGGAAGTGGACAAGGATGTAGTGACGATGATTTGCGGGGAAAGTGACTCTATCTTCTGGAGT GACGGAGTGCCAGTTGAACCGGTATCCCACACTGCATCAGTGGCGGATCTAGTTGGACAATTGGCATCAGGGAGT GGTGTTGATCCCGCGTTAGGGGGTACTCACTTTAACGGTCAGGGATTGGATTTGAAATCAGTGGGCCTTGACACA TCTGCTACTTTGTCTGCCGTATCTGCCTTACCACAGGAGCAGCTACAACAGTTGCTCCAACAGTTAGCGTCGTAT GGATCGCCCGGATCTAATCCATCACCACCATCATCAGCATCATATAATAACATTGATCCGACATGGGGAACAGGG TCGAATCAGTATTCCAACGATTATGGACAAAACTATCATGAGGACAACAATGAGCGAGAAGCATGGCCGCCAAAT GGACCGAAGGGACGGGGGCGAGGGCGAAGTTCTGGACGTGGTCGGGGAAGGGGACGTGGCGGTGGTGGTAATGGG AGTAATGGAGGAGGAGGCAATGGCGGGGGAGAAGAGTATAGACAACAACCGAATAAACGAAAACCTTGCAGTTTC TTTGCGGCTGGAAAGTGAGCATCCCCTCATCCAAACGTTCTTCCCTCCCCCTCCTTTCTTTCCCACCAAATCGCT TTCTAAAAATGGAACAAAGTTGCTGATCACGTACCGCTTTCGATAGGTGTAGATTTGGCGACCAATGTGATTTTG CCCATGACGTAGCCTCGTAG |