Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|075050
Gene name
Location	scaffold_04:2176837..2177635
Strand	-
Gene length (bp)	798
Transcript length (bp)	798
Coding sequence length (bp)	798
Protein length (aa)	266

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13561	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	1.1E-07	11	241
PF00106	adh_short	short chain dehydrogenase	2.6E-06	6	220

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P21158\|CSGA_MYXXA	C-factor OS=Myxococcus xanthus GN=csgA PE=1 SV=1	113	265	2.0E-17
sp\|Q7Z9I2\|YCP9_SCHPO	Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.09c PE=3 SV=1	6	265	2.0E-11
sp\|Q9P7I6\|YJNK_SCHPO	Uncharacterized oxidoreductase C24B10.20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B10.20 PE=3 SV=1	5	265	3.0E-11
sp\|Q7Z9I3\|YCP8_SCHPO	Uncharacterized oxidoreductase C663.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.08c PE=3 SV=1	11	265	2.0E-08
sp\|P36086\|YKH1_YEAST	Uncharacterized oxidoreductase YKL071W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL071W PE=1 SV=1	11	263	6.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|075050 MPHPFVLVTPGATRGLSLALTRQFLKTTRYPVFASHRTQKSDDEIKELILDGISGNVDPTRLNLLRLDLTSEDSI CQAADSLESMLSKSHWENPYIHTAFLTGGVLFPEKQPADLDWARLKETYQINVISHLLIIKHFSRFLPPTASSFT VPNPSKWVHITARVGSIADNHRGGWYSYRSSKAALNQVIKTFDNQLAMNKSQAFCVGMHPGTVKTDLSRGYWKSA SIDEVFEAQDAAENLVNVVENLQTQQRGKIWDWAGEGIPW*
Coding	>Agabi119p4\|075050 ATGCCTCACCCCTTTGTCCTCGTAACTCCTGGTGCTACTCGCGGTCTCTCCCTCGCGCTCACCCGCCAGTTTCTC AAGACCACCAGATATCCAGTATTTGCATCTCATCGCACCCAGAAGAGCGACGACGAAATTAAAGAACTCATCCTC GATGGCATCAGCGGCAATGTCGATCCCACGCGTCTCAATCTTCTTCGCTTGGACCTCACGTCCGAAGACTCTATT TGCCAAGCCGCTGATTCTCTCGAAAGCATGCTGTCCAAGTCTCACTGGGAAAATCCTTACATACATACCGCCTTT CTCACTGGCGGGGTGCTGTTCCCGGAAAAACAGCCTGCGGATCTCGATTGGGCTCGACTGAAAGAAACATATCAA ATCAACGTCATATCACACCTTCTTATCATTAAACACTTCTCGCGCTTCCTTCCACCTACTGCCTCCAGCTTTACA GTACCCAACCCCTCGAAGTGGGTTCATATCACGGCGCGAGTGGGTTCTATTGCCGACAACCACCGCGGGGGGTGG TATTCTTATCGTTCATCCAAAGCGGCCCTTAATCAGGTTATCAAGACATTCGACAATCAATTGGCGATGAACAAG AGTCAAGCTTTTTGCGTTGGGATGCACCCAGGAACAGTCAAGACAGACTTGAGTCGAGGCTACTGGAAGTCGGCT TCCATCGACGAGGTATTTGAGGCGCAGGATGCTGCGGAGAATCTGGTAAATGTGGTGGAGAATTTGCAGACACAA CAAAGGGGAAAAATCTGGGACTGGGCAGGCGAGGGCATTCCTTGGTAA
Transcript	>Agabi119p4\|075050 ATGCCTCACCCCTTTGTCCTCGTAACTCCTGGTGCTACTCGCGGTCTCTCCCTCGCGCTCACCCGCCAGTTTCTC AAGACCACCAGATATCCAGTATTTGCATCTCATCGCACCCAGAAGAGCGACGACGAAATTAAAGAACTCATCCTC GATGGCATCAGCGGCAATGTCGATCCCACGCGTCTCAATCTTCTTCGCTTGGACCTCACGTCCGAAGACTCTATT TGCCAAGCCGCTGATTCTCTCGAAAGCATGCTGTCCAAGTCTCACTGGGAAAATCCTTACATACATACCGCCTTT CTCACTGGCGGGGTGCTGTTCCCGGAAAAACAGCCTGCGGATCTCGATTGGGCTCGACTGAAAGAAACATATCAA ATCAACGTCATATCACACCTTCTTATCATTAAACACTTCTCGCGCTTCCTTCCACCTACTGCCTCCAGCTTTACA GTACCCAACCCCTCGAAGTGGGTTCATATCACGGCGCGAGTGGGTTCTATTGCCGACAACCACCGCGGGGGGTGG TATTCTTATCGTTCATCCAAAGCGGCCCTTAATCAGGTTATCAAGACATTCGACAATCAATTGGCGATGAACAAG AGTCAAGCTTTTTGCGTTGGGATGCACCCAGGAACAGTCAAGACAGACTTGAGTCGAGGCTACTGGAAGTCGGCT TCCATCGACGAGGTATTTGAGGCGCAGGATGCTGCGGAGAATCTGGTAAATGTGGTGGAGAATTTGCAGACACAA CAAAGGGGAAAAATCTGGGACTGGGCAGGCGAGGGCATTCCTTGGTAA
Gene	>Agabi119p4\|075050 ATGCCTCACCCCTTTGTCCTCGTAACTCCTGGTGCTACTCGCGGTCTCTCCCTCGCGCTCACCCGCCAGTTTCTC AAGACCACCAGATATCCAGTATTTGCATCTCATCGCACCCAGAAGAGCGACGACGAAATTAAAGAACTCATCCTC GATGGCATCAGCGGCAATGTCGATCCCACGCGTCTCAATCTTCTTCGCTTGGACCTCACGTCCGAAGACTCTATT TGCCAAGCCGCTGATTCTCTCGAAAGCATGCTGTCCAAGTCTCACTGGGAAAATCCTTACATACATACCGCCTTT CTCACTGGCGGGGTGCTGTTCCCGGAAAAACAGCCTGCGGATCTCGATTGGGCTCGACTGAAAGAAACATATCAA ATCAACGTCATATCACACCTTCTTATCATTAAACACTTCTCGCGCTTCCTTCCACCTACTGCCTCCAGCTTTACA GTACCCAACCCCTCGAAGTGGGTTCATATCACGGCGCGAGTGGGTTCTATTGCCGACAACCACCGCGGGGGGTGG TATTCTTATCGTTCATCCAAAGCGGCCCTTAATCAGGTTATCAAGACATTCGACAATCAATTGGCGATGAACAAG AGTCAAGCTTTTTGCGTTGGGATGCACCCAGGAACAGTCAAGACAGACTTGAGTCGAGGCTACTGGAAGTCGGCT TCCATCGACGAGGTATTTGAGGCGCAGGATGCTGCGGAGAATCTGGTAAATGTGGTGGAGAATTTGCAGACACAA CAAAGGGGAAAAATCTGGGACTGGGCAGGCGAGGGCATTCCTTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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