© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|074950 |
| Gene name | |
| Location | scaffold_04:2158155..2159964 |
| Strand | + |
| Gene length (bp) | 1809 |
| Transcript length (bp) | 1611 |
| Coding sequence length (bp) | 1611 |
| Protein length (aa) | 537 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 2.3E-04 | 234 | 271 |
| PF00400 | WD40 | WD domain, G-beta repeat | 1.1E-01 | 478 | 507 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6GPU3|DTLB_XENLA | Denticleless protein homolog B OS=Xenopus laevis GN=dtl-b PE=2 SV=1 | 127 | 508 | 6.0E-36 |
| sp|Q4V837|DTLA_XENLA | Denticleless protein homolog A OS=Xenopus laevis GN=dtl-a PE=2 SV=1 | 127 | 533 | 4.0E-35 |
| sp|Q6P1W0|DTL_XENTR | Denticleless protein homolog OS=Xenopus tropicalis GN=dtl PE=1 SV=1 | 149 | 508 | 1.0E-33 |
| sp|Q5RHI5|DTL_DANRE | Denticleless protein homolog OS=Danio rerio GN=dtl PE=2 SV=1 | 134 | 508 | 9.0E-33 |
| sp|Q5ZJW8|DTL_CHICK | Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1 | 149 | 508 | 3.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6GPU3|DTLB_XENLA | Denticleless protein homolog B OS=Xenopus laevis GN=dtl-b PE=2 SV=1 | 127 | 508 | 6.0E-36 |
| sp|Q4V837|DTLA_XENLA | Denticleless protein homolog A OS=Xenopus laevis GN=dtl-a PE=2 SV=1 | 127 | 533 | 4.0E-35 |
| sp|Q6P1W0|DTL_XENTR | Denticleless protein homolog OS=Xenopus tropicalis GN=dtl PE=1 SV=1 | 149 | 508 | 1.0E-33 |
| sp|Q5RHI5|DTL_DANRE | Denticleless protein homolog OS=Danio rerio GN=dtl PE=2 SV=1 | 134 | 508 | 9.0E-33 |
| sp|Q5ZJW8|DTL_CHICK | Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1 | 149 | 508 | 3.0E-32 |
| sp|Q9NZJ0|DTL_HUMAN | Denticleless protein homolog OS=Homo sapiens GN=DTL PE=1 SV=3 | 149 | 521 | 2.0E-30 |
| sp|Q3TLR7|DTL_MOUSE | Denticleless protein homolog OS=Mus musculus GN=Dtl PE=1 SV=2 | 149 | 533 | 2.0E-30 |
| sp|Q10990|CDT2_SCHPO | Cell division cycle protein cdt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdt2 PE=1 SV=1 | 166 | 533 | 1.0E-27 |
| sp|Q24371|L2DTL_DROME | Protein lethal(2)denticleless OS=Drosophila melanogaster GN=l(2)dtl PE=1 SV=2 | 166 | 512 | 2.0E-27 |
| sp|Q61FW2|SEL10_CAEBR | F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1 | 166 | 348 | 1.0E-07 |
| sp|Q8YRI1|YY46_NOSS1 | Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1 | 195 | 344 | 8.0E-07 |
| sp|Q61Y48|LIN53_CAEBR | Probable histone-binding protein lin-53 OS=Caenorhabditis briggsae GN=lin-53 PE=3 SV=2 | 193 | 365 | 8.0E-07 |
| sp|Q6BVZ3|PFS2_DEBHA | Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PFS2 PE=3 SV=2 | 194 | 279 | 1.0E-06 |
| sp|P49695|PKWA_THECU | Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | 166 | 274 | 1.0E-06 |
| sp|Q93847|YZLL_CAEEL | Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=3 SV=1 | 199 | 343 | 1.0E-06 |
| sp|P69103|GBLP_TRYBB | Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei brucei PE=2 SV=1 | 171 | 358 | 2.0E-06 |
| sp|O43660|PLRG1_HUMAN | Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1 | 185 | 345 | 2.0E-06 |
| sp|P69104|GBLP_TRYBR | Guanine nucleotide-binding protein subunit beta-like protein OS=Trypanosoma brucei rhodesiense PE=2 SV=1 | 171 | 358 | 2.0E-06 |
| sp|Q8R537|PEX7_CRIGR | Peroxisomal targeting signal 2 receptor OS=Cricetulus griseus GN=PEX7 PE=1 SV=1 | 166 | 350 | 2.0E-06 |
| sp|O00628|PEX7_HUMAN | Peroxisomal targeting signal 2 receptor OS=Homo sapiens GN=PEX7 PE=1 SV=1 | 166 | 350 | 2.0E-06 |
| sp|Q922V4|PLRG1_MOUSE | Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=1 SV=1 | 185 | 345 | 2.0E-06 |
| sp|Q2KID6|PLRG1_BOVIN | Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1 | 185 | 345 | 2.0E-06 |
| sp|P97865|PEX7_MOUSE | Peroxisomal targeting signal 2 receptor OS=Mus musculus GN=Pex7 PE=1 SV=1 | 166 | 350 | 3.0E-06 |
| sp|O60907|TBL1X_HUMAN | F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3 | 194 | 356 | 3.0E-06 |
| sp|Q4R8H1|TBL1X_MACFA | F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1 | 194 | 272 | 3.0E-06 |
| sp|Q9WUC8|PLRG1_RAT | Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1 | 185 | 345 | 3.0E-06 |
| sp|Q9QXE7|TBL1X_MOUSE | F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=1 SV=2 | 194 | 273 | 4.0E-06 |
| sp|Q59WJ4|PFS2_CANAL | Polyadenylation factor subunit 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PFS2 PE=3 SV=1 | 185 | 279 | 7.0E-06 |
| sp|Q6FJS0|PFS2_CANGA | Polyadenylation factor subunit 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PFS2 PE=3 SV=1 | 185 | 274 | 8.0E-06 |
| sp|Q9BQ87|TBL1Y_HUMAN | F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1 | 196 | 288 | 8.0E-06 |
| sp|Q6CP71|PFS2_KLULA | Polyadenylation factor subunit 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PFS2 PE=3 SV=1 | 185 | 358 | 8.0E-06 |
| sp|Q7SZM9|TB1RA_XENLA | F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1 | 194 | 272 | 1.0E-05 |
| sp|Q6GPC6|TB1RB_XENLA | F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1 | 196 | 272 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|074950 MSLSAPNVSRVILEDRLNLTASTSRKQKSSLPNSLPKEPVTSRKRSAKKHSQENKQKRAKTCEAASGNSEDETEE EDSALFEESDEDEPVVPARRRTAFHIQSAFTSMSAHTYRRLNVTTRPILESFVSSLKADIYSCQSINADSFLTPP YACAYSHRAKSGGSPLLAVATEEGTLQVINTSKRKPWDPEPTRQIFQPHADGVFDVKWDTTDTMIVTCSGDHSSR ITCVEKNVTTHVLHGHASTVKTAAWDPRNNALLATGGRDGAISLWDLRTSTTKSDDLYVLEPVIVIPGAHEDSTK PKVRKTKKNMPRPKTVTSLIYPEGEPYGLISSGAFDGILRFWDLRKPETPRKSRSTKPKPPPVLYSTPIDPTTFH GSRRPRGIISLAKGFGPTAGLIFGLGQDSRIHTYTLPTLASQTVGYVDDAMQTASFYAGLAISPCGNWLACGASN PKSSSFLFEVSEAGRSCGPVESERAIELPGQAGEIGAVDWADGSLATCADDGTVHVWRPDVEVYRQCQEKPDEAK WDWSWSKQVVQ* |
| Coding | >Agabi119p4|074950 ATGAGTCTCTCAGCTCCAAACGTTTCTCGTGTAATTCTTGAAGATCGCCTTAATCTCACTGCCAGCACTTCCAGG AAGCAGAAGTCATCGCTTCCAAATTCCCTCCCCAAAGAACCTGTAACCTCTCGGAAACGTTCAGCCAAAAAGCAT TCCCAAGAGAATAAACAAAAGCGAGCGAAAACTTGCGAGGCGGCATCTGGGAATTCAGAAGATGAGACTGAGGAA GAAGACTCAGCTCTGTTTGAAGAGAGTGATGAGGATGAGCCTGTAGTACCAGCGCGTCGGCGGACTGCATTTCAT ATTCAATCTGCCTTTACATCTATGTCGGCTCATACATATAGAAGACTAAATGTGACTACTCGACCCATTCTGGAG TCGTTTGTTTCTTCCCTCAAAGCAGATATCTACAGCTGTCAATCGATCAATGCCGATTCGTTCTTAACTCCTCCC TATGCTTGTGCATATTCCCATAGAGCGAAGTCCGGTGGTTCACCACTACTTGCTGTTGCGACAGAAGAAGGCACT CTGCAGGTCATCAATACTTCAAAGCGAAAGCCATGGGATCCTGAACCGACACGCCAAATCTTTCAACCTCATGCA GATGGTGTATTTGACGTCAAGTGGGACACGACTGATACCATGATTGTGACTTGCTCAGGCGACCATTCATCACGT ATAACCTGTGTTGAGAAGAATGTTACCACCCATGTTCTTCATGGACATGCAAGTACTGTGAAGACTGCAGCTTGG GACCCAAGGAACAACGCATTGCTGGCGACTGGTGGAAGGGATGGGGCGATCAGTTTATGGGACCTACGAACTAGC ACGACCAAATCGGATGATTTGTACGTCTTGGAGCCGGTGATCGTAATTCCAGGAGCACACGAAGACTCAACCAAA CCAAAGGTTAGAAAAACCAAAAAGAATATGCCGAGACCGAAAACAGTGACTAGCCTCATCTATCCGGAAGGAGAA CCATACGGCCTTATCAGTAGTGGTGCTTTCGATGGAATTCTGCGTTTCTGGGATCTACGCAAACCCGAAACCCCA CGAAAATCTCGCTCGACAAAACCTAAGCCGCCTCCGGTATTGTACTCGACACCCATAGATCCTACAACTTTCCAT GGTTCCAGACGGCCGAGAGGCATCATCAGTCTTGCCAAAGGATTTGGTCCGACGGCAGGCCTCATATTTGGCTTG GGTCAGGATTCAAGGATACATACATACACATTGCCAACACTTGCTAGCCAAACAGTTGGTTATGTTGACGATGCC ATGCAAACCGCCTCTTTCTATGCCGGTCTAGCAATTTCACCTTGTGGAAATTGGCTTGCCTGCGGCGCAAGTAAT CCCAAATCCAGCAGCTTCCTTTTCGAGGTCTCAGAAGCAGGACGCTCATGTGGGCCAGTAGAATCGGAACGTGCA ATTGAACTACCCGGACAAGCGGGGGAAATAGGTGCTGTGGATTGGGCGGATGGATCTTTAGCCACGTGCGCAGAT GACGGTACAGTTCATGTGTGGAGACCTGATGTTGAAGTGTATCGACAATGTCAGGAGAAACCTGATGAGGCAAAG TGGGACTGGTCTTGGTCGAAGCAGGTGGTACAATAA |
| Transcript | >Agabi119p4|074950 ATGAGTCTCTCAGCTCCAAACGTTTCTCGTGTAATTCTTGAAGATCGCCTTAATCTCACTGCCAGCACTTCCAGG AAGCAGAAGTCATCGCTTCCAAATTCCCTCCCCAAAGAACCTGTAACCTCTCGGAAACGTTCAGCCAAAAAGCAT TCCCAAGAGAATAAACAAAAGCGAGCGAAAACTTGCGAGGCGGCATCTGGGAATTCAGAAGATGAGACTGAGGAA GAAGACTCAGCTCTGTTTGAAGAGAGTGATGAGGATGAGCCTGTAGTACCAGCGCGTCGGCGGACTGCATTTCAT ATTCAATCTGCCTTTACATCTATGTCGGCTCATACATATAGAAGACTAAATGTGACTACTCGACCCATTCTGGAG TCGTTTGTTTCTTCCCTCAAAGCAGATATCTACAGCTGTCAATCGATCAATGCCGATTCGTTCTTAACTCCTCCC TATGCTTGTGCATATTCCCATAGAGCGAAGTCCGGTGGTTCACCACTACTTGCTGTTGCGACAGAAGAAGGCACT CTGCAGGTCATCAATACTTCAAAGCGAAAGCCATGGGATCCTGAACCGACACGCCAAATCTTTCAACCTCATGCA GATGGTGTATTTGACGTCAAGTGGGACACGACTGATACCATGATTGTGACTTGCTCAGGCGACCATTCATCACGT ATAACCTGTGTTGAGAAGAATGTTACCACCCATGTTCTTCATGGACATGCAAGTACTGTGAAGACTGCAGCTTGG GACCCAAGGAACAACGCATTGCTGGCGACTGGTGGAAGGGATGGGGCGATCAGTTTATGGGACCTACGAACTAGC ACGACCAAATCGGATGATTTGTACGTCTTGGAGCCGGTGATCGTAATTCCAGGAGCACACGAAGACTCAACCAAA CCAAAGGTTAGAAAAACCAAAAAGAATATGCCGAGACCGAAAACAGTGACTAGCCTCATCTATCCGGAAGGAGAA CCATACGGCCTTATCAGTAGTGGTGCTTTCGATGGAATTCTGCGTTTCTGGGATCTACGCAAACCCGAAACCCCA CGAAAATCTCGCTCGACAAAACCTAAGCCGCCTCCGGTATTGTACTCGACACCCATAGATCCTACAACTTTCCAT GGTTCCAGACGGCCGAGAGGCATCATCAGTCTTGCCAAAGGATTTGGTCCGACGGCAGGCCTCATATTTGGCTTG GGTCAGGATTCAAGGATACATACATACACATTGCCAACACTTGCTAGCCAAACAGTTGGTTATGTTGACGATGCC ATGCAAACCGCCTCTTTCTATGCCGGTCTAGCAATTTCACCTTGTGGAAATTGGCTTGCCTGCGGCGCAAGTAAT CCCAAATCCAGCAGCTTCCTTTTCGAGGTCTCAGAAGCAGGACGCTCATGTGGGCCAGTAGAATCGGAACGTGCA ATTGAACTACCCGGACAAGCGGGGGAAATAGGTGCTGTGGATTGGGCGGATGGATCTTTAGCCACGTGCGCAGAT GACGGTACAGTTCATGTGTGGAGACCTGATGTTGAAGTGTATCGACAATGTCAGGAGAAACCTGATGAGGCAAAG TGGGACTGGTCTTGGTCGAAGCAGGTGGTACAATAA |
| Gene | >Agabi119p4|074950 ATGAGTCTCTCAGCTCCAAACGTTTCTCGTGTAATTCTTGAAGATCGCCTTAATCTCACTGCCAGCACTTCCAGG AAGCAGAAGTCATCGCTTCCAAATTCCCTCCCCAAAGAACCTGTAACCTCTCGGAAACGTTCAGCCAAAAAGCAT TCCCAAGAGAATAAACAAAAGCGAGCGAAAACTTGCGAGGCGGCATCTGGGAATTCAGAAGATGAGACTGAGGAA GAAGACTCAGCTCTGTTTGAAGAGAGTGATGAGGATGAGCCTGTAGTACCAGCGCGTCGGCGGACTGCATTTCAT ATTCAATCTGCCTTTACATCTATGTCGGCTCATACATATAGAAGACTAAATGGTACTGTCTTTTTTTGAGGATCT ACAAATATCTAACACAGATCAGTGACTACTCGACCCATTCTGGAGTCGTTTGTTTCTTCCCTCAAAGCAGATATC TACAGCTGTCAATCGATCAATGCCGATTCGTTCTTAACTCCTCCCTATGCTTGTGCATATTCCCATAGTACGTGA TATTCTTTCCCTTACGAACTTTGAATAATTGTGTCAACCAGGAGCGAAGTCCGGTGGTTCACCACTACTTGCTGT TGCGACAGAAGAAGGCACTCTGCAGGTCATCAATACTTCAAAGCGAAAGCCATGGGATCCTGGTAATTTTGTCTG CTTCTGCTTCTAGTTTGAATTTACCCTCACTCTTACGGGTAGAACCGACACGCCAAATCTTTCAACCTCATGCAG ATGGTGTATTTGACGTCAAGTGGGACACGACTGATACCATGATTGTGACTTGCTCAGGCGACCATTCATCACGTA TAACCTGTGTTGAGAAGAATGTTACCACCCATGTTCTTCATGGACATGCAAGTACTGTGAAGACTGCAGCTTGGG ACCCAAGGAACAACGCATTGCTGGCGACTGGTGGAAGGGATGGGGCGATCAGTTTATGGGACCTACGAACTAGCA CGACCAAATCGGATGATTTGTACGTCTTGGAGCCGGTGATCGTAATTCCAGGAGCACACGAAGACTCAACCAAAC CAAAGGTTAGAAAAACCAAAAAGAATATGCCGAGACCGAAAACAGTGACTAGCCTCATCTATCCGGAAGGAGAAC CATACGGCCTTATCAGTAGTGGTGCTTTCGATGGGTAAGTTTCATAAAACTCGTTAAAAATGGCAATTAATATAA AAATGCAGAATTCTGCGTTTCTGGGATCTACGCAAACCCGAAACCCCACGAAAATCTCGCTCGACAAAACCTAAG CCGCCTCCGGTATTGTACTCGACACCCATAGATCCTACAACTTTCCATGGTTCCAGACGGCCGAGAGGCATCATC AGTCTTGCCAAAGGATTTGGTCCGACGGCAGGCCTCATATTTGGCTTGGGTCAGGATTCAAGGATACATACATAC ACATTGCCAACACTTGCTAGCCAAACAGTTGGTTATGTTGACGATGCCATGCAAACCGCCTCTTTCTATGCCGGT CTAGCAATTTCACCTTGTGGAAATTGGCTTGCCTGCGGCGCAAGTAATCCCAAATCCAGCAGCTTCCTTTTCGAG GTCTCAGAAGCAGGACGCTCATGTGGGCCAGTAGAATCGGAACGTGCAATTGAACTACCCGGACAAGCGGGGGAA ATAGGTGCTGTGGATTGGGCGGATGGATCTTTAGCCACGTGCGCAGATGACGGTACAGTTCATGTGTGGAGACCT GATGTTGAAGTGTATCGACAATGTCAGGAGAAACCTGATGAGGCAAAGTGGGACTGGTCTTGGTCGAAGCAGGTG GTACAATAA |