© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|071630 |
| Gene name | |
| Location | scaffold_04:1452203..1453562 |
| Strand | + |
| Gene length (bp) | 1359 |
| Transcript length (bp) | 1155 |
| Coding sequence length (bp) | 1155 |
| Protein length (aa) | 385 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05148 | Methyltransf_8 | Hypothetical methyltransferase | 2.3E-63 | 145 | 384 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 4.5E-07 | 221 | 312 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10257|RRP8_SCHPO | 25S rRNA (adenine(645)-N(1))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1 | 140 | 384 | 3.0E-53 |
| sp|Q54CP1|RRP8_DICDI | Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum GN=rrp8 PE=3 SV=1 | 143 | 384 | 1.0E-50 |
| sp|Q84JC0|RRP8_ARATH | Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1 | 99 | 384 | 3.0E-46 |
| sp|O43159|RRP8_HUMAN | Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1 SV=2 | 30 | 384 | 8.0E-45 |
| sp|Q9DB85|RRP8_MOUSE | Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1 | 145 | 384 | 6.0E-43 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10257|RRP8_SCHPO | 25S rRNA (adenine(645)-N(1))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp8 PE=3 SV=1 | 140 | 384 | 3.0E-53 |
| sp|Q54CP1|RRP8_DICDI | Ribosomal RNA-processing protein 8 OS=Dictyostelium discoideum GN=rrp8 PE=3 SV=1 | 143 | 384 | 1.0E-50 |
| sp|Q84JC0|RRP8_ARATH | Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1 | 99 | 384 | 3.0E-46 |
| sp|O43159|RRP8_HUMAN | Ribosomal RNA-processing protein 8 OS=Homo sapiens GN=RRP8 PE=1 SV=2 | 30 | 384 | 8.0E-45 |
| sp|Q9DB85|RRP8_MOUSE | Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1 | 145 | 384 | 6.0E-43 |
| sp|Q5U4F0|RRP8_RAT | Ribosomal RNA-processing protein 8 OS=Rattus norvegicus GN=Rrp8 PE=1 SV=1 | 132 | 384 | 4.0E-42 |
| sp|A8XI07|RRP8_CAEBR | Ribosomal RNA-processing protein 8 OS=Caenorhabditis briggsae GN=CBG13492 PE=3 SV=1 | 153 | 384 | 2.0E-40 |
| sp|P38961|RRP8_YEAST | 25S rRNA (adenine(645)-N(1))-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP8 PE=1 SV=2 | 109 | 355 | 7.0E-40 |
| sp|Q7K2B0|RRP8_DROME | Ribosomal RNA-processing protein 8 OS=Drosophila melanogaster GN=CG7137 PE=1 SV=1 | 127 | 384 | 2.0E-39 |
| sp|O44410|RRP8_CAEEL | Ribosomal RNA-processing protein 8 OS=Caenorhabditis elegans GN=T07A9.8 PE=3 SV=1 | 153 | 384 | 1.0E-38 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008168 | methyltransferase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|071630 MSLFEVTGWSVGAKPVKETRDTPSKKRKRSTSEQQVNFDKIMNKLKSRVGVDETKKEKTKPSKRNKRGNESRPKS GTSDVSELNISRPKLLKPRISVDEESVRPVKKAKTRRDSKRDSASPTSIASALSLTSPTSTPAVTNLTPLQQGMR HSLDGARFRMINETLYKSESREAHRLMQQDRKVYEEYHAGFRHQVQSWPTNPVDHYINLLSSYPPRTVIADLGCG DATLAKALTPRGLNVVSYDLVSDGEYVIEADVSDRIPLPGSEGSGREKTIGSAQVVDVVVCALSLMGTNWPMCLR EAWRILKPEGELKIAEVTSRFTDVEEFKNLVGSIGFRFKSKDERNTHFILFEFKKAARKGKSDSEWEKLMSKGEI LKACEYKRR* |
| Coding | >Agabi119p4|071630 ATGTCCTTGTTCGAAGTGACCGGATGGTCCGTTGGAGCCAAACCAGTCAAGGAGACTCGAGACACCCCGTCTAAA AAGCGTAAACGTTCCACCAGCGAGCAGCAAGTCAACTTCGACAAAATCATGAACAAGCTGAAAAGCAGGGTTGGT GTGGATGAAACGAAGAAAGAGAAAACCAAGCCTTCGAAAAGAAATAAACGAGGCAATGAATCTAGGCCAAAGTCC GGTACCAGCGATGTTAGCGAACTGAACATCTCAAGGCCAAAACTGCTAAAACCGCGGATATCTGTCGACGAGGAA TCTGTCCGACCTGTAAAAAAGGCAAAAACAAGAAGAGATTCAAAAAGAGATTCGGCGTCTCCAACAAGCATCGCT TCGGCCTTGTCATTGACTTCTCCGACCTCAACGCCTGCTGTAACAAACTTGACTCCGCTGCAGCAAGGGATGAGG CACAGTCTGGATGGTGCCAGATTCAGGATGATCAATGAAACTCTTTACAAGTCTGAAAGTCGTGAGGCCCATCGT TTGATGCAACAAGATCGAAAGGTTTATGAGGAGTACCATGCAGGATTCCGACATCAGGTTCAGTCTTGGCCGACT AATCCGGTAGATCACTATATAAATTTGCTCTCTTCGTATCCTCCTCGGACAGTAATTGCGGATCTGGGCTGTGGA GATGCCACGCTTGCGAAGGCATTGACTCCTAGAGGCCTGAATGTGGTCTCCTACGACCTGGTATCGGACGGTGAA TACGTGATTGAAGCAGATGTTTCTGATCGGATACCACTTCCTGGCTCGGAAGGAAGTGGGAGGGAGAAGACGATT GGTTCTGCGCAGGTAGTGGACGTCGTCGTCTGTGCATTGAGTCTTATGGGCACAAATTGGCCGATGTGTCTCCGA GAAGCGTGGAGAATCTTGAAGCCCGAGGGAGAACTCAAAATCGCTGAAGTTACGAGCCGTTTTACTGATGTCGAA GAGTTCAAAAATCTGGTAGGAAGCATTGGTTTCCGTTTCAAGTCGAAGGATGAACGTAACACGCATTTTATATTG TTTGAATTCAAGAAAGCTGCACGGAAAGGCAAAAGTGATAGTGAATGGGAGAAGTTGATGTCCAAGGGTGAGATA CTCAAAGCATGCGAGTATAAGCGGCGGTGA |
| Transcript | >Agabi119p4|071630 ATGTCCTTGTTCGAAGTGACCGGATGGTCCGTTGGAGCCAAACCAGTCAAGGAGACTCGAGACACCCCGTCTAAA AAGCGTAAACGTTCCACCAGCGAGCAGCAAGTCAACTTCGACAAAATCATGAACAAGCTGAAAAGCAGGGTTGGT GTGGATGAAACGAAGAAAGAGAAAACCAAGCCTTCGAAAAGAAATAAACGAGGCAATGAATCTAGGCCAAAGTCC GGTACCAGCGATGTTAGCGAACTGAACATCTCAAGGCCAAAACTGCTAAAACCGCGGATATCTGTCGACGAGGAA TCTGTCCGACCTGTAAAAAAGGCAAAAACAAGAAGAGATTCAAAAAGAGATTCGGCGTCTCCAACAAGCATCGCT TCGGCCTTGTCATTGACTTCTCCGACCTCAACGCCTGCTGTAACAAACTTGACTCCGCTGCAGCAAGGGATGAGG CACAGTCTGGATGGTGCCAGATTCAGGATGATCAATGAAACTCTTTACAAGTCTGAAAGTCGTGAGGCCCATCGT TTGATGCAACAAGATCGAAAGGTTTATGAGGAGTACCATGCAGGATTCCGACATCAGGTTCAGTCTTGGCCGACT AATCCGGTAGATCACTATATAAATTTGCTCTCTTCGTATCCTCCTCGGACAGTAATTGCGGATCTGGGCTGTGGA GATGCCACGCTTGCGAAGGCATTGACTCCTAGAGGCCTGAATGTGGTCTCCTACGACCTGGTATCGGACGGTGAA TACGTGATTGAAGCAGATGTTTCTGATCGGATACCACTTCCTGGCTCGGAAGGAAGTGGGAGGGAGAAGACGATT GGTTCTGCGCAGGTAGTGGACGTCGTCGTCTGTGCATTGAGTCTTATGGGCACAAATTGGCCGATGTGTCTCCGA GAAGCGTGGAGAATCTTGAAGCCCGAGGGAGAACTCAAAATCGCTGAAGTTACGAGCCGTTTTACTGATGTCGAA GAGTTCAAAAATCTGGTAGGAAGCATTGGTTTCCGTTTCAAGTCGAAGGATGAACGTAACACGCATTTTATATTG TTTGAATTCAAGAAAGCTGCACGGAAAGGCAAAAGTGATAGTGAATGGGAGAAGTTGATGTCCAAGGGTGAGATA CTCAAAGCATGCGAGTATAAGCGGCGGTGA |
| Gene | >Agabi119p4|071630 ATGTCCTTGTTCGAAGTGACCGGATGGTCCGTTGGAGCCAAACCAGTCAAGGAGACTCGAGACACCCCGTCTAAA AAGCGTAAACGTTCCACCAGCGAGCAGCAAGTCAACTTCGACAAAATCATGAACAAGCTGAAAAGCAGGGTTGGT GTGGATGAAACGAAGAAAGAGAAAACCAAGCCTTCGAAAAGAAATAAACGAGGCAATGAATCTAGGCCAAAGTCC GGTACCAGCGATGTTAGCGAACTGAACATCTCAAGGCCAAAACTGCTAAAACCGCGGATATCTGTCGACGAGGAA TCTGTCCGACCTGTAAAAAAGGCAAAAACAAGAAGAGATTCAAAAAGAGATTCGGCGTCTCCAACAAGCATCGCT TCGGCCTTGTCATTGACTTCTCCGACCTCAACGCCTGCTGTAACAAACTTGACTCCGCTGCAGCAAGGGATGAGG CACAGTCTGGATGGTGCCAGATTCAGGTCGGTGTTAAAAAGCTTCAACTCTGGCTGTACATGTCCTTATTTGCTT AGGATGATCAATGAAACTCTTTACAAGTCTGAAAGTCGTGAGGCCCATCGTTTGATGCAACAAGATCGAAAGGTT TATGAGGAGGTTCGCCTAGATGCTCTCCTGTTAATCTTATTTCATTCACACGGTACAAGTACCATGCAGGATTCC GACATCAGGTTCAGTCTTGGCCGACTAATCCGGTAGATCACTATATAAATTTGCTCTCTTCGTATCCTCCTCGGA CAGTAATTGCGGATCTGGGCTGTGGAGATGCCACGCTTGCGAAGGCATTGACTCCTAGAGGCCTGAATGTGGTCT CCTACGACCTGGTATCGGACGGTGAATACGTGATTGAAGCAGATGTTTCTGATCGGATACCACTTCCTGGCTCGG AAGGAAGTGGGAGGGAGAAGACGATTGGTTCTGCGCAGGTAGTGGACGTCGTCGTCTGTGCATTGAGTCTTATGG GCACAAATTGGCCGATGTGTCTCCGAGAAGCGTGGAGAATCTTGAAGCCCGAGTGCGTTTTTTCTTGCCACTGTT GTTCGTTTTCAATTTAATTCGACTCGTGTAGGGGAGAACTCAAAATCGCTGAAGTTACGAGCCGTTTTACTGATG TCGAAGAGTTCAAAAATCTGGTAGGAAGCATTGGTTTCCGTTTCAAGTCGAAGGTTTGTCTTGCTTAAAGAATGT GGTGGGTTGGGACTGATGAACATACAGGATGAACGTAACACGCATTTTATATTGTTTGAATTCAAGAAAGCTGCA CGGAAAGGCAAAAGTGATAGTGAATGGGAGAAGTTGATGTCCAAGGGTGAGATACTCAAAGCATGCGAGTATAAG CGGCGGTGA |