Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|071100
Gene name
Location	scaffold_04:1321003..1322516
Strand	-
Gene length (bp)	1513
Transcript length (bp)	1209
Coding sequence length (bp)	1209
Protein length (aa)	403

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF03676	PHAF1	Phagosome assembly factor 1	9.9E-72	19	402

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9SD33\|U183_ARATH	UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2	10	402	6.0E-30
sp\|Q9BSU1\|CP070_HUMAN	UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1	8	402	9.0E-25
sp\|O08654\|CP070_RAT	UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1	8	402	1.0E-24
sp\|Q922R1\|CP070_MOUSE	UPF0183 protein C16orf70 homolog OS=Mus musculus PE=1 SV=2	8	402	1.0E-24
sp\|Q9VSH9\|U183_DROME	UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1	238	402	5.0E-21

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9SD33\|U183_ARATH	UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2	10	402	6.0E-30
sp\|Q9BSU1\|CP070_HUMAN	UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1	8	402	9.0E-25
sp\|O08654\|CP070_RAT	UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1	8	402	1.0E-24
sp\|Q922R1\|CP070_MOUSE	UPF0183 protein C16orf70 homolog OS=Mus musculus PE=1 SV=2	8	402	1.0E-24
sp\|Q9VSH9\|U183_DROME	UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1	238	402	5.0E-21
sp\|P34692\|U183_CAEEL	UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3	21	402	2.0E-18

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|071100 MTNPYSTLEFDIHPGTSLGLFEIGSSLWTILETLRRLQHQYPQVDIKFDPDSSTTTPILIHLRPHISLLFSGLHQ RLHTISIHSLQTSNPPIILKYKDTVLSSSKDEIVLRRVSVNRTFGPTYPSGSGSDDLKYPGIWFSFEEDSGGGGV TTTTTKVAENHRKGKEIEDRSNEVKKIMILQKCNDGKIQDPLDGVTECNVMHGDIERAIIKVHDGIRLYFSPLST TNKPLHIRLHQTTAQDLTLDLGPPLRIHYKEDERMTIHSTENAEDDTNDESDYFYNYFQHGLDFFISGSTHTVKK IIIHSNIPGSPLFQRYKRCNWEIEGEPEDDEDDTPPRKRFYDRFETISHFLSPKETPPSMVLNRTDDEDGLQLPN ATTRLYGYDGIILEVLESSQVVSVTLF*
Coding	>Agabi119p4\|071100 ATGACAAACCCATATTCCACTCTCGAATTCGACATTCATCCAGGTACAAGTCTCGGGTTATTCGAAATCGGTTCA TCACTTTGGACTATCCTCGAAACTCTACGTAGGCTGCAACACCAATACCCCCAAGTCGACATCAAATTCGACCCA GATTCTTCAACAACAACACCTATACTAATCCATCTTCGTCCTCACATCTCTCTCCTCTTCTCCGGCCTCCATCAA CGTCTTCACACCATCTCTATCCATTCTCTTCAAACCTCCAACCCACCTATCATTCTCAAATATAAAGATACCGTA CTTTCTTCTTCAAAGGATGAAATTGTACTTAGGAGGGTGAGTGTGAATAGGACTTTTGGGCCGACGTATCCTTCG GGTTCGGGATCGGATGATTTGAAGTATCCTGGAATTTGGTTTAGTTTTGAAGAGGATAGTGGTGGTGGGGGTGTG ACTACGACTACGACCAAGGTTGCTGAGAATCACAGGAAGGGAAAAGAAATAGAAGATAGATCAAACGAAGTCAAG AAGATCATGATCCTCCAGAAATGTAATGACGGAAAAATCCAAGACCCTTTAGACGGCGTAACAGAATGTAATGTC ATGCACGGTGATATCGAACGCGCCATCATCAAGGTCCATGATGGAATTCGTCTTTACTTTTCCCCACTATCAACA ACCAACAAACCCCTTCATATCCGATTACATCAAACAACAGCACAAGACTTGACATTAGATCTCGGTCCGCCTTTA CGAATTCATTACAAAGAAGATGAACGTATGACCATTCATTCTACTGAAAATGCCGAAGACGACACCAACGACGAA TCAGACTATTTTTACAATTACTTTCAACACGGCCTCGATTTTTTCATTTCTGGGAGTACACACACTGTAAAGAAA ATCATCATTCACAGTAACATCCCTGGGTCTCCACTCTTCCAACGGTACAAGCGATGCAATTGGGAAATCGAAGGC GAACCAGAAGACGACGAAGACGACACACCTCCACGCAAACGATTCTACGATCGGTTCGAAACCATCAGTCATTTC CTTAGCCCAAAGGAAACACCACCATCAATGGTTTTGAATCGAACCGACGACGAAGACGGCTTACAATTACCCAAT GCAACAACACGTTTGTATGGTTATGATGGCATAATTCTAGAAGTTTTGGAATCGTCGCAAGTTGTTTCTGTTACC CTCTTCTAA
Transcript	>Agabi119p4\|071100 ATGACAAACCCATATTCCACTCTCGAATTCGACATTCATCCAGGTACAAGTCTCGGGTTATTCGAAATCGGTTCA TCACTTTGGACTATCCTCGAAACTCTACGTAGGCTGCAACACCAATACCCCCAAGTCGACATCAAATTCGACCCA GATTCTTCAACAACAACACCTATACTAATCCATCTTCGTCCTCACATCTCTCTCCTCTTCTCCGGCCTCCATCAA CGTCTTCACACCATCTCTATCCATTCTCTTCAAACCTCCAACCCACCTATCATTCTCAAATATAAAGATACCGTA CTTTCTTCTTCAAAGGATGAAATTGTACTTAGGAGGGTGAGTGTGAATAGGACTTTTGGGCCGACGTATCCTTCG GGTTCGGGATCGGATGATTTGAAGTATCCTGGAATTTGGTTTAGTTTTGAAGAGGATAGTGGTGGTGGGGGTGTG ACTACGACTACGACCAAGGTTGCTGAGAATCACAGGAAGGGAAAAGAAATAGAAGATAGATCAAACGAAGTCAAG AAGATCATGATCCTCCAGAAATGTAATGACGGAAAAATCCAAGACCCTTTAGACGGCGTAACAGAATGTAATGTC ATGCACGGTGATATCGAACGCGCCATCATCAAGGTCCATGATGGAATTCGTCTTTACTTTTCCCCACTATCAACA ACCAACAAACCCCTTCATATCCGATTACATCAAACAACAGCACAAGACTTGACATTAGATCTCGGTCCGCCTTTA CGAATTCATTACAAAGAAGATGAACGTATGACCATTCATTCTACTGAAAATGCCGAAGACGACACCAACGACGAA TCAGACTATTTTTACAATTACTTTCAACACGGCCTCGATTTTTTCATTTCTGGGAGTACACACACTGTAAAGAAA ATCATCATTCACAGTAACATCCCTGGGTCTCCACTCTTCCAACGGTACAAGCGATGCAATTGGGAAATCGAAGGC GAACCAGAAGACGACGAAGACGACACACCTCCACGCAAACGATTCTACGATCGGTTCGAAACCATCAGTCATTTC CTTAGCCCAAAGGAAACACCACCATCAATGGTTTTGAATCGAACCGACGACGAAGACGGCTTACAATTACCCAAT GCAACAACACGTTTGTATGGTTATGATGGCATAATTCTAGAAGTTTTGGAATCGTCGCAAGTTGTTTCTGTTACC CTCTTCTAA
Gene	>Agabi119p4\|071100 ATGACAAACCCATATTCCACTCTCGAATTCGACATTCATCCAGGTACAAGTCTCGGGTTATTCGAAATCGGTATA CGGTATTTTCTTGTTATAATTTCCCTCGCCTAATTTCCAATTTCAGGTTCATCACTTTGGACTATCCTCGAAACT CTACGTAGGCTGCAACACCAATACCCCCAAGTCGACATCAAATTCGACCCAGATTCTTCAACAACAACACCTATA CTAATCCATCTTCGTCCTCACATCTCTCTCCTCTTCTCCGGCCTCCATCAACGTCTTCACACCATCTCTATCCAT TCTCTTCAAACCTCCAACCCACCTATCATTCTCAAATATAAAGATACCGTACTTTCTTCTTCAAAGGATGAAATT GTACTTAGGAGGGTGAGTGTGAATAGGACTTTTGGGCCGACGTATCCTTCGGGTTCGGGATCGGATGATTTGAAG TATCCTGGAATTTGGTTTAGTTTTGAAGAGGATAGTGGTGGTGGGGGTGTGACTACGACTACGACCAAGGTTGCT GAGAATCACAGGAAGGGAAAAGAAATAGAAGATAGATCAAACGAAGTCAAGAAGATCATGATCCTCCAGAAATGT AATGACGGAAAAATCCAAGACCCTTTAGACGGCGTAACAGAATGTAATGTCATGCACGGTGATATCGAACGCGCC ATCATCAAGGTACTTAACTTCCCTCCCTTTCCTCCCCAAACTGCTACACCATCTTAGGTCCATGATGGAATTCGT CTTTACTTTTCCCCACTATCAACAACCAACAAACCCCTTCATATCCGATTACATCAAACAACAGCACAAGACTTG ACATTAGATCTCGGTCCGCCTTTACGAATTCATTACAAAGAAGATGAACGTATGACCATTCATTCTACTGAAAAT GCCGAAGACGACACCAACGACGAATCAGACTGTATGTACCTCTTCATTTCGTTGTGTATTCAACTCTGAATGTTT TCAAGATTTTTACAATTACTTTCAACACGGCCTCGATTTTTTCATTTCTGGGAGTACACACACTGTAAAGAAAAT CATCATTCACAGTAACATCGCAAGTTCTATTCCACTTTCCGAAATACATCAATCTAATGGTACAAAAACAGCCTG GGTCTCCACTCTTCCAACGGTACAAGCGATGCAATTGGGAAATCGAAGGCGAACCAGAAGACGACGAAGACGGTC CGTTTTTTAGGTCCCAGAATTCCACTCAAATGTTTATTGTTGGATAGACACACCTCCACGCAAACGATTCTACGA TCGGTTCGAAACCATCAGTCATTTCCTTAGCCCAAAGGAAACACCACCATCAATGGTTTTGAATCGAACCGACGA CGAAGACGGCTTACAATTACCCAATGCAACAACACGTTGTACGATTCCAATTTCCTTTCTTCGTTGTAAAGCTGA CCTGATCTTCCATCCAGTGTATGGTTATGATGGCATAATTCTAGAAGTTTTGGAATCGTCGCAAGTTGTTTCTGT TACCCTCTTCTAA

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