© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|070920 |
| Gene name | |
| Location | scaffold_04:1284761..1286174 |
| Strand | - |
| Gene length (bp) | 1413 |
| Transcript length (bp) | 1137 |
| Coding sequence length (bp) | 1137 |
| Protein length (aa) | 379 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09724 | Dcc1 | Sister chromatid cohesion protein Dcc1 | 6.7E-89 | 19 | 341 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q55BA5|DCC1_DICDI | Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3 SV=1 | 12 | 367 | 1.0E-20 |
| sp|Q6GL75|DCC1_XENTR | Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1 | 7 | 373 | 2.0E-20 |
| sp|Q6GMB0|DCC1_XENLA | Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1 PE=2 SV=1 | 7 | 360 | 2.0E-19 |
| sp|Q14AI0|DCC1_MOUSE | Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1 | 9 | 360 | 3.0E-18 |
| sp|Q9BVC3|DCC1_HUMAN | Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2 | 19 | 358 | 8.0E-18 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q55BA5|DCC1_DICDI | Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium discoideum GN=DDB_G0271400 PE=3 SV=1 | 12 | 367 | 1.0E-20 |
| sp|Q6GL75|DCC1_XENTR | Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1 | 7 | 373 | 2.0E-20 |
| sp|Q6GMB0|DCC1_XENLA | Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1 PE=2 SV=1 | 7 | 360 | 2.0E-19 |
| sp|Q14AI0|DCC1_MOUSE | Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1 PE=2 SV=1 | 9 | 360 | 3.0E-18 |
| sp|Q9BVC3|DCC1_HUMAN | Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2 | 19 | 358 | 8.0E-18 |
| sp|Q66I84|DCC1_DANRE | Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2 SV=1 | 7 | 360 | 1.0E-17 |
| sp|P25559|DCC1_YEAST | Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCC1 PE=1 SV=2 | 18 | 360 | 6.0E-15 |
| sp|Q09732|DCC1_SCHPO | Sister chromatid cohesion protein dcc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcc1 PE=3 SV=2 | 54 | 373 | 3.0E-13 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0031390 | Ctf18 RFC-like complex | Yes |
| GO:0007064 | mitotic sister chromatid cohesion | Yes |
| GO:1903047 | mitotic cell cycle process | No |
| GO:0006996 | organelle organization | No |
| GO:0032991 | protein-containing complex | No |
| GO:0022402 | cell cycle process | No |
| GO:0051276 | chromosome organization | No |
| GO:0016043 | cellular component organization | No |
| GO:0008150 | biological_process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0007062 | sister chromatid cohesion | No |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|070920 MPSYDLCFSAHADVESASFKLLELTPELAELLEEAAKSLTTVTFAIKGRTGEDAVLCTTDKTYSLRSVALSNSVL VVTPPSSGSSISTTRGIEPVVIRDELHEILEISPSVPKLHGLISQLRGKEYDESDEVEDNASHSDNYYSYQDAKT DVQASDEELDRGLKERRVLVINGFLRPISKDYLKTLLELVLNLLASLSLRSDNIPLDDLVSSLAQDHEVPRAVSM QLLAWFGDVDEAQGSWTMDVQAVVKEVGIGLMRHHRRDPIRKDAFLAQWKATVGDTFNPSVDLRLLTGNYLVSTT GEQENLVYFPSTELPIDPAQRLADLFRKRSRWTGDDIMPFLSEIAVGPKERDKLLLKYCRVITDPQGVWYTSRTQ YTG* |
| Coding | >Agabi119p4|070920 ATGCCTTCCTACGACTTGTGCTTTTCAGCACATGCTGATGTCGAATCCGCGTCATTTAAGCTCCTGGAACTCACA CCGGAACTCGCAGAACTACTTGAAGAAGCTGCCAAGAGTTTGACGACCGTCACGTTTGCAATCAAAGGGCGAACG GGAGAGGATGCAGTGCTGTGCACAACTGACAAGACCTACAGTCTACGATCTGTGGCCTTGTCGAACTCTGTACTG GTTGTAACTCCCCCTTCAAGCGGGTCCTCGATAAGCACTACCAGAGGTATAGAACCCGTGGTCATACGTGATGAA CTACACGAGATTCTCGAAATATCACCTTCTGTCCCTAAACTTCACGGCCTGATTAGCCAGTTGCGAGGAAAGGAA TACGACGAATCGGATGAAGTAGAAGATAACGCCTCTCACTCAGACAATTACTATTCTTACCAGGATGCCAAGACC GACGTACAGGCAAGTGACGAAGAGTTGGATCGCGGATTGAAGGAGAGGCGAGTTTTGGTGATTAATGGCTTCTTG CGCCCAATATCAAAAGACTACTTGAAAACCTTATTGGAATTAGTCTTAAATCTCTTGGCATCACTGTCTCTACGG TCTGATAATATTCCGCTCGACGATTTGGTTTCTTCACTTGCTCAAGACCACGAGGTGCCGAGAGCAGTCTCAATG CAACTGCTGGCGTGGTTTGGAGATGTAGACGAAGCACAGGGTTCATGGACAATGGATGTCCAAGCGGTCGTAAAA GAAGTAGGGATTGGGTTGATGAGACATCATCGGCGCGATCCGATCAGAAAGGATGCGTTTTTAGCTCAGTGGAAA GCAACTGTTGGAGATACTTTCAATCCCTCGGTCGATCTCAGGCTCCTAACTGGTAATTACCTGGTTTCAACGACT GGTGAACAGGAGAATCTGGTGTACTTTCCTTCGACAGAGCTGCCCATAGACCCAGCGCAGCGTTTAGCTGACCTT TTCCGCAAAAGATCACGTTGGACGGGGGATGATATCATGCCTTTTCTTAGTGAGATTGCAGTCGGCCCCAAGGAA CGAGATAAACTGCTTCTCAAGTACTGTCGCGTTATTACAGATCCCCAAGGAGTTTGGTATACTTCACGAACACAA TATACTGGCTGA |
| Transcript | >Agabi119p4|070920 ATGCCTTCCTACGACTTGTGCTTTTCAGCACATGCTGATGTCGAATCCGCGTCATTTAAGCTCCTGGAACTCACA CCGGAACTCGCAGAACTACTTGAAGAAGCTGCCAAGAGTTTGACGACCGTCACGTTTGCAATCAAAGGGCGAACG GGAGAGGATGCAGTGCTGTGCACAACTGACAAGACCTACAGTCTACGATCTGTGGCCTTGTCGAACTCTGTACTG GTTGTAACTCCCCCTTCAAGCGGGTCCTCGATAAGCACTACCAGAGGTATAGAACCCGTGGTCATACGTGATGAA CTACACGAGATTCTCGAAATATCACCTTCTGTCCCTAAACTTCACGGCCTGATTAGCCAGTTGCGAGGAAAGGAA TACGACGAATCGGATGAAGTAGAAGATAACGCCTCTCACTCAGACAATTACTATTCTTACCAGGATGCCAAGACC GACGTACAGGCAAGTGACGAAGAGTTGGATCGCGGATTGAAGGAGAGGCGAGTTTTGGTGATTAATGGCTTCTTG CGCCCAATATCAAAAGACTACTTGAAAACCTTATTGGAATTAGTCTTAAATCTCTTGGCATCACTGTCTCTACGG TCTGATAATATTCCGCTCGACGATTTGGTTTCTTCACTTGCTCAAGACCACGAGGTGCCGAGAGCAGTCTCAATG CAACTGCTGGCGTGGTTTGGAGATGTAGACGAAGCACAGGGTTCATGGACAATGGATGTCCAAGCGGTCGTAAAA GAAGTAGGGATTGGGTTGATGAGACATCATCGGCGCGATCCGATCAGAAAGGATGCGTTTTTAGCTCAGTGGAAA GCAACTGTTGGAGATACTTTCAATCCCTCGGTCGATCTCAGGCTCCTAACTGGTAATTACCTGGTTTCAACGACT GGTGAACAGGAGAATCTGGTGTACTTTCCTTCGACAGAGCTGCCCATAGACCCAGCGCAGCGTTTAGCTGACCTT TTCCGCAAAAGATCACGTTGGACGGGGGATGATATCATGCCTTTTCTTAGTGAGATTGCAGTCGGCCCCAAGGAA CGAGATAAACTGCTTCTCAAGTACTGTCGCGTTATTACAGATCCCCAAGGAGTTTGGTATACTTCACGAACACAA TATACTGGCTGA |
| Gene | >Agabi119p4|070920 ATGCCTTCCTACGACTTGTGCTTTTCAGCACATGCTGATGTCGAATCCGCGTCATTTAAGCTCCTGGAACTCACA CCGGAACTCGCAGAACTACTTGAAGAAGCTGCCAAGAGTTTGACGACCGTCACGTAGGCCTTCTCGACTCGCGTG GTTCTCCATCTGACCTTGATTCTCAGGTTTGCAATCAAAGGGCGAACGGGAGAGGATGCAGTGCTGTGCACAACT GACAAGACCTACAGTCTACGATCTGTGGCCTTGTCGAACTCTGTACTGGTTGTAACTCCCCCTTCAAGCGGGTCC TCGATAAGCACTACCAGAGGTATAGAACCCGTGGTCATACGTGATGAACTACACGAGATTCTCGAAATATCACCT TCTGTCCCTAAACTTCACGGCCTGATTAGCCAGTTGCGAGGAAAGGAATACGACGAATCGGATGAAGTAGAAGAT AACGCCTCTCACTCAGACGTACGCGGGTTATCATGCTTAGCTCGGGTCATACGTCTAACAAAGCGGATCTCGACC AGAATTACTATTCTTACCAGGATGCCAAGACCGACGTACAGGCAAGTGACGAAGAGTTGGATCGCGGATTGAAGG AGAGGCGAGTTTTGGTGATTAATGGTAAGTTGCTTCCACTCCCTACTTTGAGCGACTGTTTCGCGCAAACTCTCA ATTTGAATACAGGCTTCTTGCGCCCAATATCAAAAGACTACTTGAAAACCTTATTGGAATTAGTCTTAAATCTCT TGGCATCACTGTCTCTACGGTCTGATAATATTCCGCTCGACGATTTGGTTTCTTCACTTGCTCAAGACCACGAGG TGCCGAGAGCAGTCTCAATGCAACTGCTGGCGTGGTTTGGAGATGTAGACGAAGCACAGGGTTCATGGACAATGG ATGTCCAAGCGGTCGTAAAAGAAGTAGGGATTGGGTTGATGAGACATCATCGGGTGAGCCTATCGCGCTACCTGC TCGACGACCGGTGAAAGTAAACATGACTTAGCGCGATCCGATCAGAAAGGATGCGTTTTTAGCTCAGTGGAAAGC AACTGTTGGAGATACTTTCAATCCCTCGGTCGATCTCAGGCTCCTAACTGTGCGTGAATTGTTCATGCTCCGGGA GTTACTCGTGCTTACTTTGTTTGCCAGGGTAATTACCTGGTTTCAACGACTGGTGAACAGGAGAATCTGGTGTAC TTTCCTTCGACAGAGCTGCCCATAGACCCAGCGCAGCGTTTAGCTGACCTTTTCCGCAAAAGATCACGTTGGACG GGGGATGATATCATGCCTTTTCTTAGTGAGATTGCAGTCGGCCCCAAGGAACGAGATAAACTGCTTCTCAAGTAC TGTCGCGTTATTACAGATCCCCAAGGAGTTTGGTATACTTCACGAACACAATATACTGGCTGA |