Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|070240
Gene name
Locationscaffold_04:1141566..1142004
Strand-
Gene length (bp)438
Transcript length (bp)282
Coding sequence length (bp)282
Protein length (aa) 94

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 4.9E-19 16 89

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1 1 93 4.0E-32
sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1 7 93 4.0E-30
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm3 PE=1 SV=2 6 90 2.0E-29
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2 2 92 4.0E-29
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2 2 92 4.0E-29
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1 1 93 4.0E-32
sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1 7 93 4.0E-30
sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm3 PE=1 SV=2 6 90 2.0E-29
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2 2 92 4.0E-29
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2 2 92 4.0E-29
sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3 2 92 4.0E-29
sp|Q9LMN4|LSM3A_ARATH Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1 7 93 5.0E-28
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1 SV=1 9 91 3.0E-21
sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1 9 89 5.0E-12
sp|Q0W8R9|RUXX_METAR Putative snRNP Sm-like protein OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=UNCMA_29510 PE=3 SV=1 10 89 1.0E-11
sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=Ta1240 PE=3 SV=1 11 89 2.0E-11
sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=TV0360 PE=3 SV=2 11 89 4.0E-11
sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0875 PE=1 SV=1 12 89 7.0E-10
sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=Mbur_2181 PE=3 SV=1 10 89 1.0E-09
sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3195 PE=3 SV=1 10 89 2.0E-08
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0339 PE=3 SV=1 10 89 4.0E-08
sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1 10 89 6.0E-08
sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1518.2 PE=3 SV=1 10 89 1.0E-06
sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1 13 89 1.0E-06
sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06500 PE=1 SV=1 10 89 2.0E-06
sp|Q5JIE0|RUXX_THEKO Putative snRNP Sm-like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3 SV=1 10 89 2.0E-06
sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain NA1) GN=TON_0644 PE=3 SV=1 10 89 4.0E-06
sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1 10 89 6.0E-06
sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0525a PE=3 SV=1 24 91 7.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|070240
MEPAVASGIQEPFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTINYAKRKWE
MLFVRGDGVILVSPPSRS*
Coding >Agabi119p4|070240
ATGGAACCAGCGGTGGCATCCGGCATCCAGGAGCCCTTTGACCTGATCAGACTGTCCCTCAGCGAACGCGTGTTT
GTCAAGTTAAGGGGAGATCGAGAGCTGAGTGGCATCCTCCATGCATACGATGGACACATGAATCTCATACTCAGT
GATGTCGAGGAAACCGTCATGATCGTAGATACGGAGTCGAATCAAACCATCAACTATGCGAAACGGAAATGGGAG
ATGCTTTTCGTAAGGGGCGATGGTGTTATACTTGTCTCTCCCCCATCACGGTCTTGA
Transcript >Agabi119p4|070240
ATGGAACCAGCGGTGGCATCCGGCATCCAGGAGCCCTTTGACCTGATCAGACTGTCCCTCAGCGAACGCGTGTTT
GTCAAGTTAAGGGGAGATCGAGAGCTGAGTGGCATCCTCCATGCATACGATGGACACATGAATCTCATACTCAGT
GATGTCGAGGAAACCGTCATGATCGTAGATACGGAGTCGAATCAAACCATCAACTATGCGAAACGGAAATGGGAG
ATGCTTTTCGTAAGGGGCGATGGTGTTATACTTGTCTCTCCCCCATCACGGTCTTGA
Gene >Agabi119p4|070240
ATGGAACCAGCGGTGGCATCCGGCATCCAGGAGCCCTTTGACCTGATCAGACTGTCCCTCAGCGAACGCGTGTTT
GTCAAGTTAAGGGGAGATCGAGAGCTGAGTGGCATCCTCCATGTAAGTAGGTGTGCATCAAGCACACAGTTAGTT
CCCCGTGCTCACCAACATCGTGATCCAGGCATACGATGGACACATGAATCTCATACTCAGTGATGTCGAGGAAAC
CGTCATGATCGTAGATACGGAGTCGAATCAAACCATCAACGTGAGTATTTCCCGCATAGCTGTAAGTTATACTTA
CCTGTCCTCAGTATGCGAAACGGAAATGGGAGATGCTTTTCGTAAGGGGCGATGGTGTTATACTTGTGAGTTCTG
CTTCGGTTCCCGTAGATATCAGTTGTGAATCATGGTTAGGTCTCTCCCCCATCACGGTCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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