© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|068380 |
| Gene name | |
| Location | scaffold_04:939435..940357 |
| Strand | - |
| Gene length (bp) | 922 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03366 | YEATS | YEATS family | 3.0E-39 | 38 | 129 |
| PF20305 | pYEATS | prokaryotic YEATS domain | 3.1E-10 | 65 | 111 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6FXM4|AF9_CANGA | Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1 | 7 | 237 | 1.0E-48 |
| sp|P53930|AF9_YEAST | Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1 | 7 | 237 | 1.0E-46 |
| sp|Q5BC71|AF9_EMENI | Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1 | 7 | 248 | 3.0E-45 |
| sp|Q6CIV8|AF9_KLULA | Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1 | 7 | 239 | 2.0E-44 |
| sp|Q4WPM8|AF9_ASPFU | Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2 | 7 | 249 | 8.0E-44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6FXM4|AF9_CANGA | Protein AF-9 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YAF9 PE=3 SV=1 | 7 | 237 | 1.0E-48 |
| sp|P53930|AF9_YEAST | Protein AF-9 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YAF9 PE=1 SV=1 | 7 | 237 | 1.0E-46 |
| sp|Q5BC71|AF9_EMENI | Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=yaf9 PE=3 SV=1 | 7 | 248 | 3.0E-45 |
| sp|Q6CIV8|AF9_KLULA | Protein AF-9 homolog OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YAF9 PE=3 SV=1 | 7 | 239 | 2.0E-44 |
| sp|Q4WPM8|AF9_ASPFU | Protein AF-9 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yaf9 PE=3 SV=2 | 7 | 249 | 8.0E-44 |
| sp|Q755P0|AF9_ASHGO | Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1 | 7 | 237 | 9.0E-44 |
| sp|Q4PFI5|AF9_USTMA | Protein AF-9 homolog OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YAF9 PE=3 SV=1 | 7 | 130 | 1.0E-43 |
| sp|P0CM08|AF9_CRYNJ | Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=YAF9 PE=3 SV=1 | 1 | 158 | 4.0E-42 |
| sp|P0CM09|AF9_CRYNB | Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=YAF9 PE=3 SV=1 | 1 | 158 | 4.0E-42 |
| sp|Q10319|AF9_SCHPO | Protein AF-9 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yaf9 PE=3 SV=1 | 6 | 237 | 8.0E-42 |
| sp|Q7RZK7|AF9_NEUCR | Protein AF-9 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=yaf9 PE=3 SV=1 | 7 | 177 | 1.0E-36 |
| sp|Q6CF24|AF9_YARLI | Protein AF-9 homolog OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YAF9 PE=3 SV=1 | 68 | 249 | 1.0E-35 |
| sp|Q9FH40|TA14B_ARATH | Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1 | 7 | 237 | 9.0E-35 |
| sp|F4IPK2|TAF14_ARATH | Transcription initiation factor TFIID subunit 14 OS=Arabidopsis thaliana GN=TAF14 PE=1 SV=1 | 5 | 238 | 4.0E-32 |
| sp|Q59LC9|AF9_CANAL | Protein AF-9 homolog OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=YAF9 PE=3 SV=1 | 2 | 248 | 3.0E-31 |
| sp|Q4I7S1|AF9_GIBZE | Protein AF-9 homolog OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YAF9 PE=3 SV=1 | 7 | 248 | 1.0E-30 |
| sp|O95619|YETS4_HUMAN | YEATS domain-containing protein 4 OS=Homo sapiens GN=YEATS4 PE=1 SV=1 | 7 | 173 | 3.0E-24 |
| sp|Q9CR11|YETS4_MOUSE | YEATS domain-containing protein 4 OS=Mus musculus GN=Yeats4 PE=2 SV=1 | 7 | 173 | 4.0E-24 |
| sp|P0CM09|AF9_CRYNB | Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=YAF9 PE=3 SV=1 | 140 | 251 | 6.0E-16 |
| sp|P0CM08|AF9_CRYNJ | Protein AF-9 homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=YAF9 PE=3 SV=1 | 140 | 251 | 6.0E-16 |
| sp|O94436|TAF14_SCHPO | Transcription initiation factor TFIID subunit 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg3 PE=1 SV=1 | 61 | 126 | 1.0E-13 |
| sp|Q9ULM3|YETS2_HUMAN | YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 | 11 | 127 | 6.0E-11 |
| sp|Q3TUF7|YETS2_MOUSE | YEATS domain-containing protein 2 OS=Mus musculus GN=Yeats2 PE=1 SV=2 | 11 | 127 | 7.0E-11 |
| sp|Q4PFI5|AF9_USTMA | Protein AF-9 homolog OS=Ustilago maydis (strain 521 / FGSC 9021) GN=YAF9 PE=3 SV=1 | 135 | 251 | 9.0E-11 |
| sp|A2AM29|AF9_MOUSE | Protein AF-9 OS=Mus musculus GN=Mllt3 PE=1 SV=1 | 40 | 171 | 2.0E-09 |
| sp|Q03111|ENL_HUMAN | Protein ENL OS=Homo sapiens GN=MLLT1 PE=1 SV=2 | 40 | 167 | 4.0E-09 |
| sp|P42568|AF9_HUMAN | Protein AF-9 OS=Homo sapiens GN=MLLT3 PE=1 SV=2 | 40 | 171 | 4.0E-09 |
| sp|P35189|TAF14_YEAST | Transcription initiation factor TFIID subunit 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF14 PE=1 SV=1 | 66 | 119 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0008150 | biological_process | No |
| GO:0065007 | biological regulation | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|068380 MSSDRVRVRGLTIFRPIIYGNTATVLAEKERQTLPHADHTHKWTVAVRSAASAPGSDIVGGADDIAHFIKRVSFK LHDTYPNPSRNIDKPPFEVSETGWGEFEIQIRITFVAESGEKAMTLYHHLKLHPWAAAGEPEIPPLNVAIKMGPV HSWQYDEVVFNDPFQNFLNILTAHPPTPLPKVRRKPVPFHLANPNSLEASRGGVPEFSQAMEKEELERVEEARKA VVAETDKWRNTLIEKEKELSELQKLVANQS* |
| Coding | >Agabi119p4|068380 ATGTCAAGTGATCGCGTCCGCGTCCGAGGCCTGACTATCTTTCGTCCGATAATATACGGGAACACTGCGACTGTC CTCGCTGAAAAGGAACGACAAACGCTCCCCCATGCCGACCACACACACAAGTGGACAGTGGCTGTCCGTTCTGCC GCCTCTGCTCCAGGATCCGATATCGTAGGCGGCGCGGACGACATCGCACACTTCATAAAAAGGGTCTCTTTCAAG CTTCACGATACATATCCCAACCCGTCTCGAAATATTGATAAACCACCTTTCGAAGTCTCGGAGACAGGTTGGGGC GAATTTGAGATTCAAATCCGTATCACATTTGTTGCTGAATCTGGAGAAAAAGCGATGACTCTCTATCATCATCTC AAACTCCATCCATGGGCTGCTGCTGGCGAACCAGAAATACCACCACTCAACGTTGCAATCAAGATGGGCCCCGTT CACTCTTGGCAGTATGATGAAGTAGTATTCAACGACCCCTTTCAAAATTTCCTCAACATCCTCACCGCACATCCT CCCACACCTCTCCCAAAAGTTCGGCGCAAGCCCGTACCGTTCCATCTAGCTAACCCCAACTCACTCGAAGCATCA AGGGGTGGTGTACCTGAATTCTCGCAAGCCATGGAAAAAGAGGAATTGGAACGAGTTGAAGAGGCACGAAAGGCC GTCGTTGCCGAGACCGACAAGTGGCGAAATACTCTTATTGAGAAGGAAAAAGAGCTCAGCGAACTTCAGAAGCTA GTCGCCAACCAGTCATGA |
| Transcript | >Agabi119p4|068380 ATGTCAAGTGATCGCGTCCGCGTCCGAGGCCTGACTATCTTTCGTCCGATAATATACGGGAACACTGCGACTGTC CTCGCTGAAAAGGAACGACAAACGCTCCCCCATGCCGACCACACACACAAGTGGACAGTGGCTGTCCGTTCTGCC GCCTCTGCTCCAGGATCCGATATCGTAGGCGGCGCGGACGACATCGCACACTTCATAAAAAGGGTCTCTTTCAAG CTTCACGATACATATCCCAACCCGTCTCGAAATATTGATAAACCACCTTTCGAAGTCTCGGAGACAGGTTGGGGC GAATTTGAGATTCAAATCCGTATCACATTTGTTGCTGAATCTGGAGAAAAAGCGATGACTCTCTATCATCATCTC AAACTCCATCCATGGGCTGCTGCTGGCGAACCAGAAATACCACCACTCAACGTTGCAATCAAGATGGGCCCCGTT CACTCTTGGCAGTATGATGAAGTAGTATTCAACGACCCCTTTCAAAATTTCCTCAACATCCTCACCGCACATCCT CCCACACCTCTCCCAAAAGTTCGGCGCAAGCCCGTACCGTTCCATCTAGCTAACCCCAACTCACTCGAAGCATCA AGGGGTGGTGTACCTGAATTCTCGCAAGCCATGGAAAAAGAGGAATTGGAACGAGTTGAAGAGGCACGAAAGGCC GTCGTTGCCGAGACCGACAAGTGGCGAAATACTCTTATTGAGAAGGAAAAAGAGCTCAGCGAACTTCAGAAGCTA GTCGCCAACCAGTCATGA |
| Gene | >Agabi119p4|068380 ATGTCAAGTGATCGCGTCCGCGTCCGAGTACGCAAATCTCTCCCTTGAACTCAACCTACAATCTCAATTCAATAC AGGGCCTGACTATCTTTCGTCCGATAATATACGGGAACACTGCGACTGTCCTCGCTGAAAAGGAACGACAAACGC TCCCCCATGCCGACCACACACACAAGTGGACAGTGGCTGTCCGTTCTGCCGCCTCTGCTCCAGGATCCGATATCG TAGGCGGCGCGGACGACATCGCACACTTCATAAAAAGGGTCTCTTTCAAGCTTCACGATACATATCCCAACCCGT CTCGAAGTATGTTTCATTCCACTGATGGCAAACACATGCTATACCAAACTTGACAGATATTGATAAACCACCTTT CGAAGTCTCGGAGACAGGGTACGTCGTCGCACATGCTTATCGCTCTTTCTATCAGCTCATAATATTCAACAGTTG GGGCGAATTTGAGATTCAAATCCGTATCACATTTGTTGCTGAATCTGGAGAAAAAGCGATGACTCTCTATCATCA TCTCAAACTCCATCCATGGGCTGCTGCTGGCGAACCAGAAATACCACCACTCAACGTTGCAATCAAGATGGGCCC CGTTCACTCTTGGCAGTATGATGAAGTAGTATTCAACGACCCCTTTCAAAATTTCCTCAACATCCTCACCGCACA TCCTCCCACACCTCTCCCAAAAGTTCGGCGCAAGCCCGTACCGTTCCATCTAGCTAACCCCAACTCACTCGAAGC ATCAAGGGGTGGTGTACCTGAATTCTCGCAAGCCATGGAAAAAGAGGAATTGGAACGAGTTGAAGAGGCACGAAA GGCCGTCGTTGCCGAGACCGACAAGTGGCGAAATACTCTTATTGAGAAGGAAAAAGAGCTCAGCGAACTTCAGAA GCTAGTCGCCAACCAGTCATGA |