Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|068260
Gene name
Locationscaffold_04:901844..904590
Strand-
Gene length (bp)2746
Transcript length (bp)1848
Coding sequence length (bp)1848
Protein length (aa) 616

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04928 PAP_central Poly(A) polymerase central domain 6.8E-110 11 354
PF04926 PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain 3.8E-53 356 525
PF01909 NTP_transf_2 Nucleotidyltransferase domain 6.5E-10 84 133

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 11 536 0.0E+00
sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 10 521 0.0E+00
sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 7 531 0.0E+00
sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 7 542 1.0E-179
sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 8 560 1.0E-139
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPA PE=3 SV=1 11 536 0.0E+00
sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAP1 PE=1 SV=1 10 521 0.0E+00
sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pla1 PE=1 SV=1 7 531 0.0E+00
sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1 7 542 1.0E-179
sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 8 560 1.0E-139
sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 1 405 1.0E-137
sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 1 405 1.0E-137
sp|Q9LMT2|PAPS1_ARATH Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana GN=PAPS1 PE=1 SV=1 10 528 8.0E-136
sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 9 426 5.0E-135
sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 9 532 6.0E-135
sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 9 426 8.0E-135
sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 10 606 3.0E-134
sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 10 521 7.0E-134
sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 11 512 8.0E-132
sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1 11 537 2.0E-126
sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1 2 363 2.0E-124
sp|O82312|PAPS2_ARATH Nuclear poly(A) polymerase 2 OS=Arabidopsis thaliana GN=PAPS2 PE=1 SV=2 11 535 8.0E-121
sp|Q56XM9|PAPS3_ARATH Nuclear poly(A) polymerase 3 OS=Arabidopsis thaliana GN=PAPS3 PE=1 SV=1 24 406 2.0E-62
sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1 241 426 1.0E-52
sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1 32 411 8.0E-42
[Show less]

GO

GO Term Description Terminal node
GO:0016779 nucleotidyltransferase activity Yes
GO:0043631 RNA polyadenylation Yes
GO:0004652 polynucleotide adenylyltransferase activity Yes
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0003674 molecular_function No
GO:0016740 transferase activity No
GO:0008152 metabolic process No
GO:0003676 nucleic acid binding No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005488 binding No
GO:0044238 primary metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0016772 transferase activity, transferring phosphorus-containing groups No
GO:0006725 cellular aromatic compound metabolic process No
GO:0008150 biological_process No
GO:0009987 cellular process No
GO:0070566 adenylyltransferase activity No
GO:0016070 RNA metabolic process No
GO:0071704 organic substance metabolic process No
GO:0003824 catalytic activity No
GO:0044237 cellular metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 58 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|068260
MAAETETTYLGVTPPISTSVSTEREKEVTITLMDELRRQNMFETEDESQLREIVLGRVAQLVKKFVHKVALLRGL
SESAADSAGGKIFTFGSYRLGVHGPGSDIDTLCVVPKHVTRDDFFEYFEPLLRELDGVTEVAGVPEAYVPVVKTK
ISGIPLDLLMARMTLSAIPDDLTLDDDNLLRNMDERCIRSLGGSRVTDAMLRLVPDVQVFRDSLRCIKLWARRRA
IYSNVNGFLGGVAWAMLVARICQLYPNATAGAIVSRFFIIMYQWCWPQPVLLKQIEDGPLQVRVWNPKLYPSDRS
HRMPIITPAYPAMCATHNVTESTQMIMTEEFKKGADIVDKVIVGSASWSDLFAKHDFFHKYRYYLQVIASTGNSD
LQIKWAGTVESRIRQLIMKLEYVESLTLAHPFIKGFDQVAYCLNEEEVRAIAQGETSPAIAARKKEDVEGKEGAG
PVYSTTFYIGLMIEPKQPGSSGPRRLDISYPTIEFTKQVKLWEKYDESTMGLIVRHIRSSSLPDYVFDPGERPPK
VTQKRTKGPGKTHNTSPDMPNKRQRSSQSVTTDLSLKQAENGHAAPANRVPVSEAPPPPPAAMKEHTDLKTPQLP
FGENVGVVTGVVAAQ*
Coding >Agabi119p4|068260
ATGGCTGCGGAAACAGAGACAACGTATCTCGGGGTAACCCCACCAATATCGACGTCGGTTTCTACAGAGCGAGAG
AAGGAGGTCACCATAACTCTCATGGACGAACTCAGGCGGCAGAATATGTTTGAAACAGAAGACGAGTCACAATTG
AGAGAAATTGTTTTGGGCCGTGTCGCTCAATTGGTCAAGAAATTTGTGCACAAAGTTGCGCTCTTAAGGGGTTTA
TCTGAATCAGCAGCCGATTCCGCTGGTGGAAAGATATTCACTTTCGGGTCATATCGACTAGGTGTCCATGGACCT
GGCTCAGACATCGATACCTTATGCGTCGTCCCCAAACATGTTACCAGAGATGATTTCTTCGAATACTTCGAACCC
TTGCTGAGAGAATTGGATGGTGTGACGGAAGTTGCGGGCGTTCCGGAGGCATACGTACCCGTCGTGAAAACAAAA
ATTTCTGGAATACCATTAGATCTACTAATGGCGCGGATGACATTGTCAGCGATACCAGATGACCTTACACTAGAT
GATGATAACCTATTACGAAACATGGATGAACGATGTATCAGGAGTCTTGGAGGCTCCCGGGTGACTGATGCAATG
CTTCGACTAGTTCCAGACGTACAAGTGTTTCGAGATTCTTTACGGTGCATCAAACTTTGGGCGAGACGAAGAGCC
ATTTATTCCAATGTTAACGGATTTCTTGGAGGCGTTGCATGGGCAATGCTTGTGGCTCGAATCTGTCAGCTCTAC
CCGAATGCTACCGCTGGTGCCATTGTTAGCAGATTCTTCATAATCATGTATCAATGGTGCTGGCCGCAGCCAGTA
CTACTCAAACAGATCGAGGACGGCCCGCTCCAAGTCAGAGTCTGGAATCCCAAGCTATATCCGTCTGACCGCTCT
CATCGAATGCCTATAATTACCCCTGCTTACCCCGCCATGTGTGCAACCCACAATGTTACGGAATCAACACAAATG
ATTATGACAGAAGAGTTCAAAAAGGGTGCCGACATTGTCGACAAGGTCATTGTTGGAAGTGCATCCTGGTCAGAT
CTCTTTGCGAAACATGATTTCTTTCACAAGTATCGCTATTACTTGCAGGTGATCGCTTCAACGGGCAATTCAGAT
CTTCAGATCAAATGGGCGGGTACTGTTGAATCTCGAATACGCCAATTAATCATGAAATTGGAATATGTGGAATCT
CTAACATTGGCGCATCCTTTCATCAAGGGCTTTGATCAAGTCGCATATTGTCTCAATGAAGAGGAAGTTCGTGCG
ATTGCTCAGGGGGAAACCTCCCCCGCTATCGCCGCACGTAAGAAAGAAGACGTGGAAGGAAAAGAGGGTGCTGGG
CCCGTATACTCAACTACGTTTTACATCGGGCTCATGATCGAACCCAAACAACCTGGCTCCTCTGGACCTCGACGA
TTAGATATATCCTATCCTACCATAGAATTTACCAAGCAGGTCAAGCTGTGGGAAAAGTACGATGAATCAACCATG
GGGCTGATTGTTCGTCACATCAGGAGCTCTAGTCTTCCTGACTATGTTTTCGATCCTGGAGAGCGACCACCCAAA
GTCACCCAGAAGCGGACGAAGGGACCTGGCAAGACACACAACACCTCACCAGATATGCCAAACAAAAGACAGCGA
TCCTCACAGTCGGTGACAACAGACCTTTCCCTCAAACAGGCAGAAAATGGACATGCGGCACCTGCAAATCGAGTA
CCTGTCTCTGAGGCCCCTCCACCACCGCCAGCAGCAATGAAGGAGCATACAGATCTTAAGACTCCACAACTACCT
TTTGGCGAGAATGTCGGTGTTGTAACCGGCGTTGTAGCGGCACAATAA
Transcript >Agabi119p4|068260
ATGGCTGCGGAAACAGAGACAACGTATCTCGGGGTAACCCCACCAATATCGACGTCGGTTTCTACAGAGCGAGAG
AAGGAGGTCACCATAACTCTCATGGACGAACTCAGGCGGCAGAATATGTTTGAAACAGAAGACGAGTCACAATTG
AGAGAAATTGTTTTGGGCCGTGTCGCTCAATTGGTCAAGAAATTTGTGCACAAAGTTGCGCTCTTAAGGGGTTTA
TCTGAATCAGCAGCCGATTCCGCTGGTGGAAAGATATTCACTTTCGGGTCATATCGACTAGGTGTCCATGGACCT
GGCTCAGACATCGATACCTTATGCGTCGTCCCCAAACATGTTACCAGAGATGATTTCTTCGAATACTTCGAACCC
TTGCTGAGAGAATTGGATGGTGTGACGGAAGTTGCGGGCGTTCCGGAGGCATACGTACCCGTCGTGAAAACAAAA
ATTTCTGGAATACCATTAGATCTACTAATGGCGCGGATGACATTGTCAGCGATACCAGATGACCTTACACTAGAT
GATGATAACCTATTACGAAACATGGATGAACGATGTATCAGGAGTCTTGGAGGCTCCCGGGTGACTGATGCAATG
CTTCGACTAGTTCCAGACGTACAAGTGTTTCGAGATTCTTTACGGTGCATCAAACTTTGGGCGAGACGAAGAGCC
ATTTATTCCAATGTTAACGGATTTCTTGGAGGCGTTGCATGGGCAATGCTTGTGGCTCGAATCTGTCAGCTCTAC
CCGAATGCTACCGCTGGTGCCATTGTTAGCAGATTCTTCATAATCATGTATCAATGGTGCTGGCCGCAGCCAGTA
CTACTCAAACAGATCGAGGACGGCCCGCTCCAAGTCAGAGTCTGGAATCCCAAGCTATATCCGTCTGACCGCTCT
CATCGAATGCCTATAATTACCCCTGCTTACCCCGCCATGTGTGCAACCCACAATGTTACGGAATCAACACAAATG
ATTATGACAGAAGAGTTCAAAAAGGGTGCCGACATTGTCGACAAGGTCATTGTTGGAAGTGCATCCTGGTCAGAT
CTCTTTGCGAAACATGATTTCTTTCACAAGTATCGCTATTACTTGCAGGTGATCGCTTCAACGGGCAATTCAGAT
CTTCAGATCAAATGGGCGGGTACTGTTGAATCTCGAATACGCCAATTAATCATGAAATTGGAATATGTGGAATCT
CTAACATTGGCGCATCCTTTCATCAAGGGCTTTGATCAAGTCGCATATTGTCTCAATGAAGAGGAAGTTCGTGCG
ATTGCTCAGGGGGAAACCTCCCCCGCTATCGCCGCACGTAAGAAAGAAGACGTGGAAGGAAAAGAGGGTGCTGGG
CCCGTATACTCAACTACGTTTTACATCGGGCTCATGATCGAACCCAAACAACCTGGCTCCTCTGGACCTCGACGA
TTAGATATATCCTATCCTACCATAGAATTTACCAAGCAGGTCAAGCTGTGGGAAAAGTACGATGAATCAACCATG
GGGCTGATTGTTCGTCACATCAGGAGCTCTAGTCTTCCTGACTATGTTTTCGATCCTGGAGAGCGACCACCCAAA
GTCACCCAGAAGCGGACGAAGGGACCTGGCAAGACACACAACACCTCACCAGATATGCCAAACAAAAGACAGCGA
TCCTCACAGTCGGTGACAACAGACCTTTCCCTCAAACAGGCAGAAAATGGACATGCGGCACCTGCAAATCGAGTA
CCTGTCTCTGAGGCCCCTCCACCACCGCCAGCAGCAATGAAGGAGCATACAGATCTTAAGACTCCACAACTACCT
TTTGGCGAGAATGTCGGTGTTGTAACCGGCGTTGTAGCGGCACAATAA
Gene >Agabi119p4|068260
ATGGCTGCGGAAACAGAGACAACGTAAGTCAAGTATTCTTTGAGGCTGCTTGCGCTTTTTTCTCATTCGCAGCTC
AAGGTATCTCGGGGTAACCCCACCAATATCGACGTCGGTTTCTACAGAGCGAGAGAAGGAGGTCACCATAACTCT
CATGGACGAACTCAGGCGGCAGAATATGTTTGAAACAGAAGACGAGTCACAATTGAGGTGGGTTCTGCAACCATC
ATCCTTCCGTCTTCAGGCGCCCGTCCATCCGCTTTGCCTGGTCAATGCGCTGTGCATTACTCGGTTCGGAAATCT
CCAAACTGCTGTACGGGACCGCGAGATCCTGCCGGCTGCATGTTCGCAACGACAAATTACCGGCTTTTGGTTACG
AGCTTCGACTGTATCGCCCCCCACCACCTTTTCAATGCATCGGCTGGCGGATACTTACTTCATGTAAATCACAGA
GAAATTGTTTTGGGCCGTGTCGCTCAATTGGTCAAGAAATTTGTGCACAAAGTTGCGCTCTTAAGGGGTTTATCT
GAATCAGCAGCCGATTCCGCTGGTGGAAAGATATTCACTTTCGGGTCATATCGACTAGGTGTCCATGGACCTGGC
TCAGACATCGATACCTTATGCGTCGTCCCCAAACATGTTACCAGAGATGATTTCTTCGAATACTTCGAACCCTTG
CTGAGAGAATTGGATGGTGTGACGGAAGTTGCGGTACGAAACTTATTTCATTGAATTGTTCGAATTATTAATGGC
TGAAACTCGGGGGCAATAGGGCGTTCCGGAGGCATACGTACCCGTCGTGAAAACAAAAATTTCTGGAATACCATT
AGATCTACTAATGGCGCGGATGACATTGTCAGCGATACCAGATGACCTTACACTAGATGATGATAACCTATTACG
AAACATGGATGAACGATGTATCAGGAGTCTTGGAGGTTTGATCTCTACTTTTCGATTCGAGAGGTTCGATATGCT
GACCATATTTCGTTAGGCTCCCGGGTGACTGATGCAATGCTTCGACTAGTTCCAGACGTACAAGTGTTTCGAGAT
TCTTTACGGTGCATCAAACTTTGGGCGAGACGTCGGTGATAACTTTCCTTCCGATGGCTGTCATGACTCATCCAA
TTTTAGGAAGAGCCATTTATTCCAATGTTAACGGATTTCTTGGAGGCGTTGCATGGGCAATGCTTGTGGCTCGAA
TCTGTCAGCTCTACCCGAATGCTACCGCTGGTGCCATTGTTAGCAGATTCTTCATAATCATGTATCAATGGTAGG
TCCTTTTATTCTCGTATCAATTCCCTTTCTTACATGTATGTCATCAGGTGCTGGCCGCAGCCAGTACTACTCAAA
CAGATCGAGGACGGCCCGCTCCAAGTCAGAGTCTGGAATCCCAAGGTGGACAATGCTCCTGCTTTTTGTTTGATA
CCAAAGATTGACTCATCATTTTTAGCTATATCCGTCTGACCGCTCTCATCGAATGCCTATAATTACCCCTGCTTA
CCCCGCCATGTGTGCAACCCACAATGTTACGGAATCAACACAAATGATTATGACAGAAGAGTTCAAAAAGGGTAT
GGTTTTTTGTTCAAGCTTTGATATGCCACCTAAAATCACTCGTCCAAGGTGCCGACATTGTCGACAAGGTCATTG
TTGGAAGTGCATCCTGGTCAGATCTCTTTGCGAAACATGATTTCTTTCACAAGTATCGCTATTACTTGCAGGTGA
TCGCTTCAACGGGCAATTCAGATCTTCAGATCAAATGGTGTGTCCAATTTTGGATCATCCTCTGGTGTGCTCAAC
TGGTATCAGGGCGGGTACTGTTGAATCTCGAATACGCCAATTAATCATGAAATTGGAATATGTGGAATCTCTAAC
ATTGGCGCATCCTTTCATCAAGGGCTTTGATCAAGTCGCATATTGTCTCAATGAAGAGGAAGTTCGTGCGATTGC
TCAGGGGGAAACCTCCCCCGCTATCGCCGCACGTAAGAAAGAAGACGTGGAAGGAAAAGAGGGTGCTGGGCCCGT
ATACTCAACTACGTTTTACATCGGGCTCATGATCGAACCCAAACAACGTACCCTCTTTTATACCTCCCGTTCAAC
GAGAATGTGCTGACATTTAACTGTTCAGCTGGCTCCTCTGGACCTCGACGATTAGATATATCCTATCCTACCATA
GAATTTACCAAGCAGGTCAAGCTGTGGGAAAAGTACGATGAATCAACCATGGGGCTGATTGTTCGTCACATCAGG
AGGTTTGGTCTTTTGTACTTACTACTACTATTTCATTGTACTAAACGATATCAGCTCTAGTCTTCCTGACTATGT
TTTCGATCCTGGAGAGCGACCACCCAAAGTCACCCAGAAGCGGACGAAGGTGAGTGTTATGGGAGTTGCGAATGA
AACTTTCTAATGAGTTCCTGCCTTTCAATTAAACAAAGGGACCTGGCAAGACACACAACACCTCACCAGATATGC
CAAACAAAAGACAGCGGTTCGTCTAGTGAATATGTGTCAAACTTTGTAGCCCTTAAACACACCCCTTTTCAGATC
CTCACAGTCGGTGACAACAGACCTTTCCCTCAAACAGGCAGAAAATGGACATGCGGCACCTGCAAATCGAGTACC
TGTCTCTGAGGCCCCTCCACCACCGCCAGCAGCAATGAAGGAGCATACAGATCTTAAGACTCCACAACTACCTTT
TGGCGAGAATGTCGGTGTTGTAACCGGCGTTGTAGCGGCACAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail