© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Agabi119p4|068230 |
| Gene name | |
| Location | scaffold_04:892919..895273 |
| Strand | - |
| Gene length (bp) | 2354 |
| Transcript length (bp) | 2136 |
| Coding sequence length (bp) | 2136 |
| Protein length (aa) | 712 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10637 | Ofd1_CTDD | Oxoglutarate and iron-dependent oxygenase degradation C-term | 1.0E-71 | 357 | 698 |
| PF13661 | 2OG-FeII_Oxy_4 | 2OG-Fe(II) oxygenase superfamily | 1.4E-32 | 194 | 305 |
| PF13640 | 2OG-FeII_Oxy_3 | 2OG-Fe(II) oxygenase superfamily | 1.1E-13 | 194 | 305 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q11120|OFD1_SCHPO | Prolyl 3,4-dihydroxylase ofd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ofd1 PE=1 SV=1 | 74 | 694 | 1.0E-94 |
| sp|P40032|TPA1_YEAST | Prolyl 3,4-dihydroxylase TPA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPA1 PE=1 SV=1 | 80 | 708 | 1.0E-92 |
| sp|Q01F03|OGFD1_OSTTA | Prolyl 3,4-dihydroxylase OGFOD1 OS=Ostreococcus tauri GN=Ogd PE=1 SV=1 | 94 | 694 | 8.0E-72 |
| sp|Q8N543|OGFD1_HUMAN | Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1 | 81 | 395 | 2.0E-24 |
| sp|Q3U0K8|OGFD1_MOUSE | Prolyl 3-hydroxylase OGFOD1 OS=Mus musculus GN=Ogfod1 PE=1 SV=1 | 85 | 395 | 3.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q11120|OFD1_SCHPO | Prolyl 3,4-dihydroxylase ofd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ofd1 PE=1 SV=1 | 74 | 694 | 1.0E-94 |
| sp|P40032|TPA1_YEAST | Prolyl 3,4-dihydroxylase TPA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPA1 PE=1 SV=1 | 80 | 708 | 1.0E-92 |
| sp|Q01F03|OGFD1_OSTTA | Prolyl 3,4-dihydroxylase OGFOD1 OS=Ostreococcus tauri GN=Ogd PE=1 SV=1 | 94 | 694 | 8.0E-72 |
| sp|Q8N543|OGFD1_HUMAN | Prolyl 3-hydroxylase OGFOD1 OS=Homo sapiens GN=OGFOD1 PE=1 SV=1 | 81 | 395 | 2.0E-24 |
| sp|Q3U0K8|OGFD1_MOUSE | Prolyl 3-hydroxylase OGFOD1 OS=Mus musculus GN=Ogfod1 PE=1 SV=1 | 85 | 395 | 3.0E-24 |
| sp|Q5R4R3|OGFD1_PONAB | Prolyl 3-hydroxylase OGFOD1 OS=Pongo abelii GN=OGFOD1 PE=2 SV=1 | 81 | 395 | 5.0E-24 |
| sp|Q3MI03|OGFD1_BOVIN | Prolyl 3-hydroxylase OGFOD1 OS=Bos taurus GN=OGFOD1 PE=2 SV=2 | 81 | 395 | 1.0E-23 |
| sp|Q6DE73|OGFD1_XENLA | Prolyl 3-hydroxylase OGFOD1 OS=Xenopus laevis GN=ogfod1 PE=2 SV=1 | 102 | 406 | 7.0E-20 |
| sp|Q9I7H9|OGFD1_DROME | Prolyl 3-hydroxylase sudestada1 OS=Drosophila melanogaster GN=sud1 PE=2 SV=1 | 127 | 394 | 6.0E-16 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005506 | iron ion binding | Yes |
| GO:0031418 | L-ascorbic acid binding | Yes |
| GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0031406 | carboxylic acid binding | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0048029 | monosaccharide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0051213 | dioxygenase activity | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0043168 | anion binding | No |
| GO:0019842 | vitamin binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0043167 | ion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043177 | organic acid binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|068230 MDQKILRDMGRVEEWNTRRYLRKGASRGTRRAWPPHQIHQRKQCTIYFVEKTYQENIDPAKHIKRLKAVVDDMPS SSSSFAANLFDHNTIAAHNNSYHNNSPFKHSVIDKLFQDDLLSKVKDECLSINFTEKQTDIYKVHQTGDLASLNY IKPEERDQLANLLTLRDALYSAQFRNFLRVVTGCGPLSGIKQDMSVNSYRKGCHLLNHDDVISSRRVSYILYMPI TPRHIWRKEWGGALELYPVIKGEDGTPVPDVTPSKIIPPSWNQFVFFEVQPGKSFHSVEEVIVGGEGDNRNRLSI SGWFHAAQPGEEGYVPEQNSTYKSSREQLQTTSIEFRPYTPTDEEALAFATTLSDDHIAFLSEFLNPVYLQPRTM QALSARFVEESSLELHQFLNNPLSQALQPRLRELDVKDGLGPDRPLTIPNHTAGVAWQPPTGVDRASYFNTRPHS NDRTRSPSFSPNPNWIIRGPPHKWRYCTLSPKSLHKLEAVTPRSAHASPVEIMRSLQDELFPSDAFRAWLAIVAG LVPMGWICEARRFRPGLDYTLATSEANEARLDVVLGLTPELCDIKGSRGNSKDVQTNDWQSSDWGGWECYMAPHN EDDDPTVYKSGNSSQLRNENIRQRSSKSNTEDADQMEVEEEADTYGNDDDSTLLTVHPGFNRLLLVLRDEKVMRF VKYVSASAEGSRWDVCAEYEVGALQPDDDDDDAQEG* |
| Coding | >Agabi119p4|068230 ATGGATCAAAAGATACTGCGGGACATGGGTCGCGTGGAAGAATGGAATACACGGCGATACTTAAGGAAAGGAGCC TCGAGAGGAACTAGACGAGCCTGGCCCCCTCATCAAATCCATCAACGAAAACAGTGTACAATTTATTTTGTAGAA AAAACATATCAAGAGAACATCGATCCTGCAAAACATATCAAGCGCCTCAAGGCGGTCGTGGACGACATGCCCTCC TCCAGCTCCAGCTTCGCTGCTAACCTCTTTGATCACAACACCATTGCTGCCCACAACAACTCGTACCACAACAAT TCCCCTTTCAAGCACTCTGTCATAGACAAACTCTTCCAGGATGATCTTCTTTCCAAGGTCAAGGACGAATGTTTG AGCATCAACTTTACCGAAAAGCAAACGGATATCTACAAGGTTCACCAAACCGGTGACCTCGCCTCCCTCAATTAT ATCAAGCCCGAGGAGCGAGACCAGCTTGCAAATCTCTTGACTCTCCGCGATGCGCTCTACTCAGCCCAGTTCCGC AACTTTCTTCGAGTTGTCACTGGATGCGGTCCTCTTTCTGGCATCAAACAGGACATGTCTGTCAACTCGTACAGA AAGGGCTGTCACCTTCTCAATCACGACGATGTCATTAGTTCTCGACGCGTCTCTTACATACTGTACATGCCTATT ACCCCCCGTCATATATGGCGGAAGGAATGGGGCGGCGCCCTGGAGCTCTATCCTGTGATCAAGGGTGAGGATGGC ACACCCGTTCCCGACGTGACACCTTCAAAAATCATCCCGCCGAGTTGGAATCAATTTGTTTTCTTCGAGGTTCAG CCAGGTAAAAGCTTCCATTCTGTAGAAGAAGTCATCGTTGGAGGTGAAGGCGACAATCGTAACCGGCTTAGTATC AGTGGATGGTTCCATGCCGCGCAACCGGGTGAAGAAGGCTATGTGCCCGAGCAGAATTCTACCTACAAAAGCTCC AGAGAGCAGCTTCAAACAACAAGTATCGAGTTCAGACCCTATACGCCCACCGATGAAGAAGCTCTCGCCTTTGCT ACAACCTTATCCGATGATCATATCGCATTTCTCTCGGAGTTCCTCAACCCGGTGTACCTCCAGCCTAGGACCATG CAGGCACTCTCAGCTCGCTTCGTCGAAGAATCTTCTCTTGAATTGCACCAATTTCTAAATAACCCGCTATCACAG GCTCTTCAACCTCGTTTGCGCGAATTGGATGTGAAGGACGGTCTAGGTCCTGATCGGCCACTAACCATCCCAAAC CACACCGCAGGAGTCGCCTGGCAGCCGCCAACGGGTGTTGATCGCGCTTCATATTTCAATACACGCCCCCATAGC AATGATCGCACAAGAAGTCCCAGTTTCTCTCCAAATCCAAACTGGATAATCCGTGGCCCACCGCACAAGTGGCGC TACTGCACCCTTTCCCCAAAATCGCTACATAAACTTGAAGCTGTCACACCACGCTCAGCACATGCATCCCCTGTT GAAATCATGCGATCACTTCAAGATGAACTCTTCCCTTCCGATGCTTTTCGTGCATGGCTGGCTATTGTTGCTGGG CTGGTGCCTATGGGGTGGATATGCGAAGCTAGACGATTTAGACCTGGTTTAGACTACACTTTGGCGACGAGTGAA GCGAACGAGGCAAGGCTAGATGTTGTTCTTGGGTTGACACCCGAGTTGTGTGACATCAAAGGCTCGCGAGGAAAC AGTAAGGATGTCCAAACGAACGATTGGCAAAGCTCTGATTGGGGTGGTTGGGAGTGTTATATGGCTCCTCACAAC GAGGATGACGATCCCACCGTATATAAATCTGGGAATAGCAGCCAACTTCGAAATGAAAACATTCGGCAACGTTCC TCGAAGTCAAATACCGAAGATGCAGATCAAATGGAGGTAGAAGAAGAAGCAGATACATATGGAAATGACGATGAT AGTACACTGTTGACAGTGCATCCTGGATTTAATCGGCTGCTTTTGGTGTTGAGAGATGAGAAGGTGATGAGGTTT GTGAAGTATGTTTCTGCTTCTGCGGAGGGATCTCGATGGGATGTATGTGCTGAGTACGAGGTGGGCGCACTTCAA CCGGATGATGATGATGATGACGCCCAAGAAGGATGA |
| Transcript | >Agabi119p4|068230 ATGGATCAAAAGATACTGCGGGACATGGGTCGCGTGGAAGAATGGAATACACGGCGATACTTAAGGAAAGGAGCC TCGAGAGGAACTAGACGAGCCTGGCCCCCTCATCAAATCCATCAACGAAAACAGTGTACAATTTATTTTGTAGAA AAAACATATCAAGAGAACATCGATCCTGCAAAACATATCAAGCGCCTCAAGGCGGTCGTGGACGACATGCCCTCC TCCAGCTCCAGCTTCGCTGCTAACCTCTTTGATCACAACACCATTGCTGCCCACAACAACTCGTACCACAACAAT TCCCCTTTCAAGCACTCTGTCATAGACAAACTCTTCCAGGATGATCTTCTTTCCAAGGTCAAGGACGAATGTTTG AGCATCAACTTTACCGAAAAGCAAACGGATATCTACAAGGTTCACCAAACCGGTGACCTCGCCTCCCTCAATTAT ATCAAGCCCGAGGAGCGAGACCAGCTTGCAAATCTCTTGACTCTCCGCGATGCGCTCTACTCAGCCCAGTTCCGC AACTTTCTTCGAGTTGTCACTGGATGCGGTCCTCTTTCTGGCATCAAACAGGACATGTCTGTCAACTCGTACAGA AAGGGCTGTCACCTTCTCAATCACGACGATGTCATTAGTTCTCGACGCGTCTCTTACATACTGTACATGCCTATT ACCCCCCGTCATATATGGCGGAAGGAATGGGGCGGCGCCCTGGAGCTCTATCCTGTGATCAAGGGTGAGGATGGC ACACCCGTTCCCGACGTGACACCTTCAAAAATCATCCCGCCGAGTTGGAATCAATTTGTTTTCTTCGAGGTTCAG CCAGGTAAAAGCTTCCATTCTGTAGAAGAAGTCATCGTTGGAGGTGAAGGCGACAATCGTAACCGGCTTAGTATC AGTGGATGGTTCCATGCCGCGCAACCGGGTGAAGAAGGCTATGTGCCCGAGCAGAATTCTACCTACAAAAGCTCC AGAGAGCAGCTTCAAACAACAAGTATCGAGTTCAGACCCTATACGCCCACCGATGAAGAAGCTCTCGCCTTTGCT ACAACCTTATCCGATGATCATATCGCATTTCTCTCGGAGTTCCTCAACCCGGTGTACCTCCAGCCTAGGACCATG CAGGCACTCTCAGCTCGCTTCGTCGAAGAATCTTCTCTTGAATTGCACCAATTTCTAAATAACCCGCTATCACAG GCTCTTCAACCTCGTTTGCGCGAATTGGATGTGAAGGACGGTCTAGGTCCTGATCGGCCACTAACCATCCCAAAC CACACCGCAGGAGTCGCCTGGCAGCCGCCAACGGGTGTTGATCGCGCTTCATATTTCAATACACGCCCCCATAGC AATGATCGCACAAGAAGTCCCAGTTTCTCTCCAAATCCAAACTGGATAATCCGTGGCCCACCGCACAAGTGGCGC TACTGCACCCTTTCCCCAAAATCGCTACATAAACTTGAAGCTGTCACACCACGCTCAGCACATGCATCCCCTGTT GAAATCATGCGATCACTTCAAGATGAACTCTTCCCTTCCGATGCTTTTCGTGCATGGCTGGCTATTGTTGCTGGG CTGGTGCCTATGGGGTGGATATGCGAAGCTAGACGATTTAGACCTGGTTTAGACTACACTTTGGCGACGAGTGAA GCGAACGAGGCAAGGCTAGATGTTGTTCTTGGGTTGACACCCGAGTTGTGTGACATCAAAGGCTCGCGAGGAAAC AGTAAGGATGTCCAAACGAACGATTGGCAAAGCTCTGATTGGGGTGGTTGGGAGTGTTATATGGCTCCTCACAAC GAGGATGACGATCCCACCGTATATAAATCTGGGAATAGCAGCCAACTTCGAAATGAAAACATTCGGCAACGTTCC TCGAAGTCAAATACCGAAGATGCAGATCAAATGGAGGTAGAAGAAGAAGCAGATACATATGGAAATGACGATGAT AGTACACTGTTGACAGTGCATCCTGGATTTAATCGGCTGCTTTTGGTGTTGAGAGATGAGAAGGTGATGAGGTTT GTGAAGTATGTTTCTGCTTCTGCGGAGGGATCTCGATGGGATGTATGTGCTGAGTACGAGGTGGGCGCACTTCAA CCGGATGATGATGATGATGACGCCCAAGAAGGATGA |
| Gene | >Agabi119p4|068230 ATGGATCAAAAGATACTGCGGGACATGGGTCGCGTGGAAGAATGGAATACACGGCGATACTTAAGGAAAGGAGCC TCGAGAGGAACTAGACGAGCCTGGCCCCCTCATCAAATCCATCAACGAAAACAGTGTACAATTTATTTTGTAGAA AAAACATATCAAGGTGCCGGCGCTTGACCTCTTCTACCAATGCCTGGCACTCACGCCCGAGACTTTTCTCCAGAG AACATCGATCCTGCAAAACATATCAAGCGCCTCAAGGCGGTCGTGGACGACATGCCCTCCTCCAGCTCCAGCTTC GCTGCTAACCTCTTTGATCACAACACCATTGCTGCCCACAACAACTCGTACCACAACAATTCCCCTTTCAAGCAC TCTGTCATAGACAAACTCTTCCAGGATGATCTTCTTTCCAAGGTCAAGGACGAATGTTTGAGCATCAACTTTACC GAAAAGCAAACGGATATCTACAAGGTGGGTCTCTATTTCTACTCCGGCCCCTCATTTTTGATTTTGCGCCAGGTT CACCAAACCGGTGACCTCGCCTCCCTCAATTATATCAAGCCCGAGGAGCGAGACCAGCTTGCAAATCTCTTGACT CTCCGCGATGCGCTCTACTCAGCCCAGTTCCGCAACTTTCTTCGAGTTGTCACTGGATGCGGTCCTCTTTCTGGC ATCAAACAGGACATGTCTGTCAACTCGTACAGAAAGGGCTGTCACCTTCTCAATCACGACGATGTCATTAGTTCT CGACGCGTCTCTTACATACTGTACATGCCTATTACCCCCCGTCATATATGGCGGAAGGAATGGGGCGGCGCCCTG GAGCTCTATCCTGTGATCAAGGGTGAGGATGGCACACCCGTTCCCGACGTGACACCTTCAAAAATCATCCCGCCG AGTTGGAATCAATTTGTTTTCTTCGAGGTTCAGCCAGGTAAAAGCTTCCATTCTGTAGAAGAAGTCATCGTTGGA GGTGAAGGCGACAATCGTAACCGGCTTAGTATCAGTGGATGGTTCCATGCCGCGCAACCGGGTGAAGAAGGCTAT GTGCCCGAGCAGAATTCTACCTACAAAAGCTCCAGAGAGCAGCTTGTATGTATCCAATCTGATTCGAAAATTTTT ATATCTTATACCGTGGTAGCAAACAACAAGTATCGAGTTCAGACCCTATACGCCCACCGATGAAGAAGCTCTCGC CTTTGCTACAACCTTATCCGATGATCATATCGCATTTCTCTCGGAGTTCCTCAACCCGGTGTACCTCCAGCCTAG GACCATGCAGGCACTCTCAGCTCGCTTCGTCGAAGAATCTTCTCTTGAATTGCACCAATTTCTAAATAACCCGCT ATCACAGGCTCTTCAACCTCGTTTGCGCGAATTGGATGTGAAGGACGGTCTAGGTCCTGATCGGCCACTAACCAT CCCAAACCACACCGCAGGAGTCGCCTGGCAGCCGCCAACGGGTGTTGATCGCGCTTCATATTTCAATACACGCCC CCATAGCAATGATCGCACAAGAAGTCCCAGTTTCTCTCCAAATCCAAACTGGATAATCCGTGGCCCACCGCACAA GTGGCGCTACTGCACCCTTTCCCCAAAATCGCTACATAAACTTGAAGCTGTCACACCACGCTCAGCACATGCATC CCCTGTTGAAATCATGCGATCACTTCAAGATGAACTCTTCCCTTCCGATGCTTTTCGTGCATGGCTGGCTATTGT TGCTGGGCTGGTGCCTATGGGGTGGATATGCGAAGCTAGACGATTTAGACCTGGTTTAGACTACACTTTGGCGAC GAGTGAAGCGAACGAGGCAAGGCTAGATGTTGTTCTTGGGTTGACACCCGAGTTGTGTGACATCAAAGGCTCGCG AGGAAACAGTAAGGATGTCCAAACGAACGATTGGCAAAGCTCTGATTGGGGTGGTTGGGAGGTGCGTCAACATGT GTGGCTACCTTGAACTTGCTCGATTGATATTCGCCCCATGTCTCTAGTGTTATATGGCTCCTCACAACGAGGATG ACGATCCCACCGTATATAAATCTGGGAATAGCAGCCAACTTCGAAATGAAAACATTCGGCAACGTTCCTCGAAGT CAAATACCGAAGATGCAGATCAAATGGAGGTAGAAGAAGAAGCAGATACATATGGAAATGACGATGATAGTACAC TGTTGACAGTGCATCCTGGATTTAATCGGCTGCTTTTGGTGTTGAGAGATGAGAAGGTGATGAGGTTTGTGAAGT ATGTTTCTGCTTCTGCGGAGGGATCTCGATGGGATGTATGTGCTGAGTACGAGGTGGGCGCACTTCAACCGGATG ATGATGATGATGACGCCCAAGAAGGATGA |