Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|067700
Gene name
Locationscaffold_04:765190..766700
Strand-
Gene length (bp)1510
Transcript length (bp)1059
Coding sequence length (bp)1059
Protein length (aa) 353

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 2.4E-03 43 74

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9FKT5|THOC3_ARATH THO complex subunit 3 OS=Arabidopsis thaliana GN=THO3 PE=1 SV=1 21 333 4.0E-49
sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1 52 350 3.0E-43
sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1 52 350 3.0E-43
sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1 52 350 3.0E-43
sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=3 SV=1 31 350 8.0E-26
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Swissprot ID Swissprot Description Start End E-value
sp|Q9FKT5|THOC3_ARATH THO complex subunit 3 OS=Arabidopsis thaliana GN=THO3 PE=1 SV=1 21 333 4.0E-49
sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1 52 350 3.0E-43
sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1 52 350 3.0E-43
sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1 52 350 3.0E-43
sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC18B5.10c PE=3 SV=1 31 350 8.0E-26
sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum GN=AAC3 PE=2 SV=2 33 349 4.0E-23
sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=3 SV=1 57 302 1.0E-08
sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 49 301 7.0E-08
sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1 36 286 1.0E-07
sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1 46 302 1.0E-07
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 49 302 2.0E-07
sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=3 SV=1 49 302 2.0E-07
sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1 193 327 4.0E-07
sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1 193 327 4.0E-07
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 49 302 4.0E-07
sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3 SV=1 189 302 6.0E-07
sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1 36 286 8.0E-07
sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1 192 302 8.0E-07
sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia GN=GSPATT00007594001 PE=3 SV=1 202 303 1.0E-06
sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1 52 264 1.0E-06
sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PFS2 PE=3 SV=1 52 264 1.0E-06
sp|O80990|CIA1_ARATH Protein CIA1 OS=Arabidopsis thaliana GN=CIA1 PE=1 SV=2 27 163 1.0E-06
sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1 193 327 2.0E-06
sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2 198 327 2.0E-06
sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=3 SV=1 43 315 2.0E-06
sp|P79147|GBB3_CANLF Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis lupus familiaris GN=GNB3 PE=2 SV=1 90 289 3.0E-06
sp|Q61011|GBB3_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2 90 289 3.0E-06
sp|P52287|GBB3_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Rattus norvegicus GN=Gnb3 PE=1 SV=1 90 289 3.0E-06
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 49 302 4.0E-06
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein subunit beta OS=Loligo forbesi PE=2 SV=1 90 289 4.0E-06
sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 67 331 4.0E-06
sp|P16520|GBB3_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Homo sapiens GN=GNB3 PE=1 SV=1 90 289 5.0E-06
sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=3 SV=1 47 302 6.0E-06
sp|A0DB19|LIS11_PARTE Lissencephaly-1 homolog 1 OS=Paramecium tetraurelia GN=GSPATT00015130001 PE=3 SV=1 202 303 6.0E-06
sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=3 SV=1 49 286 6.0E-06
sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1 231 300 7.0E-06
sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2 SV=1 231 300 7.0E-06
sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1 195 327 7.0E-06
sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=3 SV=1 52 333 7.0E-06
sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1 46 308 7.0E-06
sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=3 SV=1 46 310 8.0E-06
sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1 46 306 8.0E-06
sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1 231 300 8.0E-06
sp|Q9ERF3|WDR61_MOUSE WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=1 SV=1 76 300 9.0E-06
sp|Q4V7A0|WDR61_RAT WD repeat-containing protein 61 OS=Rattus norvegicus GN=Wdr61 PE=1 SV=1 76 300 9.0E-06
sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1 74 289 1.0E-05
sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b PE=2 SV=1 49 302 1.0E-05
sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1 200 302 1.0E-05
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|067700
MASAQDDEPIPQRQPSPPPHTTFAARGIHPPNFSAFKPKDYRHPTTQPITHVAWNCDGRKLAGVGVDKTARVWNP
EKSLEYRSAQAYSGGHSDDVDYVSWNPTHPELFCTSGQRDRRIVFWDARQSRFTQQCVLKVAPSYTQYAPDGRSI
LYVTAGQQLMFLSYGKETEEAKEQWHPKILPNQKESVGSKAIFNHTGDGVVVAFHSEHTLRVLDYPSLDVRDSPA
AHVGGCMALALDPRGRYLASGGLDSIVNLFDVRDWIVSRTITACENNVNDLSFSHDGEFLAIASTGSYIDICAVE
TGLSMHRISALAPSPTVSWHPSKYALAYCGQIKAREGGPPPAAVISMFGLIE*
Coding >Agabi119p4|067700
ATGGCTTCTGCCCAGGACGACGAGCCCATTCCGCAAAGGCAGCCATCCCCTCCACCTCATACAACATTCGCCGCC
CGTGGTATTCATCCTCCGAATTTCTCTGCTTTCAAGCCAAAAGATTACCGCCACCCAACGACACAACCGATCACA
CATGTAGCTTGGAATTGTGATGGACGCAAACTCGCTGGGGTCGGAGTTGATAAAACGGCAAGGGTTTGGAACCCG
GAAAAATCTCTCGAGTATAGATCTGCTCAGGCTTATTCAGGCGGACACTCTGACGATGTTGACTACGTATCGTGG
AATCCAACTCACCCGGAACTTTTTTGCACGTCAGGTCAAAGAGACCGTCGTATTGTCTTCTGGGATGCAAGACAA
AGTCGTTTTACCCAACAATGTGTTCTGAAAGTGGCGCCGTCCTATACTCAATATGCTCCAGACGGACGTTCTATT
TTGTATGTCACTGCGGGTCAACAACTCATGTTTTTGTCCTACGGTAAAGAGACAGAAGAGGCCAAAGAACAATGG
CACCCAAAAATACTACCTAATCAAAAAGAATCTGTTGGATCCAAGGCTATCTTCAATCATACAGGAGACGGAGTA
GTTGTGGCATTTCACTCTGAACATACACTTCGAGTGCTGGATTATCCGAGTTTGGATGTAAGAGATTCTCCAGCA
GCTCATGTCGGTGGATGTATGGCATTAGCTTTAGACCCAAGGGGTCGCTATCTCGCTTCCGGGGGCTTAGACTCT
ATCGTGAACTTGTTCGACGTGAGAGATTGGATCGTTTCCAGGACAATCACAGCCTGCGAGAACAACGTTAACGAT
CTTAGCTTCTCTCATGATGGTGAATTTCTAGCTATCGCTAGCACAGGGTCCTACATCGATATCTGTGCTGTTGAG
ACTGGTTTGTCTATGCACCGCATTTCAGCACTGGCGCCTTCCCCGACTGTATCCTGGCATCCATCAAAATATGCC
CTCGCATACTGTGGTCAAATCAAAGCTCGTGAAGGCGGTCCACCACCTGCTGCTGTTATAAGCATGTTCGGACTC
ATAGAATAA
Transcript >Agabi119p4|067700
ATGGCTTCTGCCCAGGACGACGAGCCCATTCCGCAAAGGCAGCCATCCCCTCCACCTCATACAACATTCGCCGCC
CGTGGTATTCATCCTCCGAATTTCTCTGCTTTCAAGCCAAAAGATTACCGCCACCCAACGACACAACCGATCACA
CATGTAGCTTGGAATTGTGATGGACGCAAACTCGCTGGGGTCGGAGTTGATAAAACGGCAAGGGTTTGGAACCCG
GAAAAATCTCTCGAGTATAGATCTGCTCAGGCTTATTCAGGCGGACACTCTGACGATGTTGACTACGTATCGTGG
AATCCAACTCACCCGGAACTTTTTTGCACGTCAGGTCAAAGAGACCGTCGTATTGTCTTCTGGGATGCAAGACAA
AGTCGTTTTACCCAACAATGTGTTCTGAAAGTGGCGCCGTCCTATACTCAATATGCTCCAGACGGACGTTCTATT
TTGTATGTCACTGCGGGTCAACAACTCATGTTTTTGTCCTACGGTAAAGAGACAGAAGAGGCCAAAGAACAATGG
CACCCAAAAATACTACCTAATCAAAAAGAATCTGTTGGATCCAAGGCTATCTTCAATCATACAGGAGACGGAGTA
GTTGTGGCATTTCACTCTGAACATACACTTCGAGTGCTGGATTATCCGAGTTTGGATGTAAGAGATTCTCCAGCA
GCTCATGTCGGTGGATGTATGGCATTAGCTTTAGACCCAAGGGGTCGCTATCTCGCTTCCGGGGGCTTAGACTCT
ATCGTGAACTTGTTCGACGTGAGAGATTGGATCGTTTCCAGGACAATCACAGCCTGCGAGAACAACGTTAACGAT
CTTAGCTTCTCTCATGATGGTGAATTTCTAGCTATCGCTAGCACAGGGTCCTACATCGATATCTGTGCTGTTGAG
ACTGGTTTGTCTATGCACCGCATTTCAGCACTGGCGCCTTCCCCGACTGTATCCTGGCATCCATCAAAATATGCC
CTCGCATACTGTGGTCAAATCAAAGCTCGTGAAGGCGGTCCACCACCTGCTGCTGTTATAAGCATGTTCGGACTC
ATAGAATAA
Gene >Agabi119p4|067700
ATGGCTTCTGCCCAGGACGACGAGCCCATTCCGCAAAGGCAGCCATCCCCTCCACCTCATACAACATTCGCCGCC
CGTGGTATTCATGTATGACCGAATCCCTTACCATAACATACCGCCAATGAGGCTTATATTTATATCCTATTCTGC
TTCGCATTTCAAACTTCCTCGGTCTATACTAGCCTCCGAATTTCTCTGCTTTCAAGCCAAAAGATTACCGCCACC
CAACGACACAACCGATCACACATGTAGCTTGGAATTGTGATGGACGCAAACTCGCTGGGGTCGGAGTTGATAAAA
CGGCAAGGGTTTGGAACCCGGAAAAATCTGTGAGTCGGATGAGTGGTTGTTGCGTGCAACTTTGGCTCATACTGT
TATTATGACTAGCTCGAGTATAGATCTGCTCAGGCTTATTCAGGCGGACACTCTGACGATGTTGACTACGTATCG
TGGAATCCAACTCACCCGGAACTTTTTTGCACGTCAGGTCAAAGAGACCGTCGTATTGTCTTCTGGGATGCAAGA
CGTGAGTTTTCTAGGAAGTTCTTTTTGCATAACATTGAGTTTTTGAATGATTTGTTGTCAGAAAGTCGTTTTACC
CAACAATGTGTTCTGAAAGTGGCGCCGTCCTATACTCAATATGCTCCAGACGGACGTTCTATTTTGTATGTCACT
GCGGGTCAACAACTCATGTTTTTGTCCTACGGTAAAGAGACAGAAGAGGCCAAAGAACAATGGCACCCAAAAATA
CTACCTAATCAAAAAGAATCTGTATGTCCACTTGAATGACCCGTAACTTCATCCCACAATCTCTTAAATCAACGT
TATAATAGGTTGGATCCAAGGCTATCTTCAATCATACAGGAGACGGAGTAGTTGTGGCATTTCACTCTGAACATA
CACTTCGAGTGCTGGATTATCCGAGTTTGGATGTAAGAGATTCTCCAGCAGCTCATGTCGGTGGATGTATGGCAT
TAGCTTTAGACCCAAGGGGTCGGTGAGTCCATGGGATGCACAGTCCATGTTTGTCGTCTGACAACAATTCAAGCT
ATCTCGCTTCCGGGGGCTTAGACTCTATCGTGAACTTGTTCGACGTGAGAGATTGGATCGTTTCCAGGACAATCA
CAGCCTGCGAGTTGCGTGTTTCTTCTTCTCTCTCTCTCGGTTGTTTGGTCGGAGATTTATATATTTGTTATCAAC
AGGAACAACGTTAACGATCTTAGCTTCTCTCATGATGGTGAATTTCTAGCTATCGCTAGCACAGGGTCCTACATC
GATATCGTGAGTAACCCCTTTCTTCTCGCATCTTTGAATCTTCGGTCTTACGAAAAAAAATCAGTGTGCTGTTGA
GACTGGTTTGTCTATGCACCGCATTTCAGCACTGGCGCCTTCCCCGACTGTATCCTGGCATCCATCAAAATATGC
CCTCGCATACTGTGGTCAAATCAAAGCTCGTGAAGGCGGTCCACCACCTGCTGCTGTTATAAGCATGTTCGGACT
CATAGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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