Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|061620
Gene name
Location	scaffold_03b:287275..288928
Strand	+
Gene length (bp)	1653
Transcript length (bp)	1353
Coding sequence length (bp)	1353
Protein length (aa)	451

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04925	SHQ1	SHQ1 protein	7.1E-66	237	430

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O43076\|SHQ1_SCHPO	Protein shq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shq1 PE=3 SV=1	1	447	4.0E-80
sp\|Q05B18\|SHQ1_XENTR	Protein SHQ1 homolog OS=Xenopus tropicalis GN=shq1 PE=2 SV=1	1	437	8.0E-70
sp\|Q7TMX5\|SHQ1_MOUSE	Protein SHQ1 homolog OS=Mus musculus GN=Shq1 PE=1 SV=2	1	448	5.0E-61
sp\|A1L1R0\|SHQ1_DANRE	Protein SHQ1 homolog OS=Danio rerio GN=shq1 PE=1 SV=1	1	447	2.0E-59
sp\|P40486\|SHQ1_YEAST	Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1	1	420	2.0E-59

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O43076\|SHQ1_SCHPO	Protein shq1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=shq1 PE=3 SV=1	1	447	4.0E-80
sp\|Q05B18\|SHQ1_XENTR	Protein SHQ1 homolog OS=Xenopus tropicalis GN=shq1 PE=2 SV=1	1	437	8.0E-70
sp\|Q7TMX5\|SHQ1_MOUSE	Protein SHQ1 homolog OS=Mus musculus GN=Shq1 PE=1 SV=2	1	448	5.0E-61
sp\|A1L1R0\|SHQ1_DANRE	Protein SHQ1 homolog OS=Danio rerio GN=shq1 PE=1 SV=1	1	447	2.0E-59
sp\|P40486\|SHQ1_YEAST	Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1	1	420	2.0E-59
sp\|Q6PI26\|SHQ1_HUMAN	Protein SHQ1 homolog OS=Homo sapiens GN=SHQ1 PE=1 SV=2	1	423	4.0E-58
sp\|Q3MHH1\|SHQ1_BOVIN	Protein SHQ1 homolog OS=Bos taurus GN=SHQ1 PE=2 SV=1	1	405	3.0E-54
sp\|Q9TYM6\|SHQ1_CAEEL	Protein SHQ1 homolog OS=Caenorhabditis elegans GN=Y48A5A.1 PE=3 SV=4	1	450	1.0E-31
sp\|Q9VI74\|SHQ1_DROME	Protein SHQ1 homolog OS=Drosophila melanogaster GN=CG10055 PE=2 SV=1	273	448	1.0E-12

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 27	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|061620 MITPRFTCSQTYESVVVSVYCPSIRAADVEIHVDANLLSLHVNPYFLRLTFSHSLLEDDASSANYNPTSGYLTIT LTKENKGQEFQDLDLLTRLLAPRKTKSGPMIEALPSEDNDEDKLVSQIDNLSLNKDELLEAVENDWQLPQQLPQD LPSLETSVQKYYGFLNLHSGYFRHVVHTENEVNELGTDVESCPASERRRLRIQHEDDKWDEEYYMADYADDEYIQ ELLNWVSPQLISNEDIQYTDEEKETMLRLPRKEYLASPLETHNIYLTLITLLFSYAYDSRTTQSDPTPESAWTIC SLTPAFSALDPPNITTKDSRAFVLDEVTEILISSYRRVLAFPLYRSFALAEACQKDVARILCKGKRLLIRCLLEM KQILDHHEVYYVYSKIWVDDFCSWVQSHASDETLKELGELMSKAKVVKSSIGWDLEELEAATLEATNREADSDDE *
Coding	>Agabi119p4\|061620 ATGATCACGCCTCGCTTTACCTGCTCTCAAACGTACGAATCGGTCGTCGTTTCTGTATATTGTCCATCTATTCGT GCCGCGGACGTCGAAATCCACGTCGACGCCAATCTGCTCTCGCTCCACGTCAATCCATACTTTCTGCGACTGACG TTCTCCCATTCGCTTCTGGAAGATGATGCGTCCTCCGCAAATTATAATCCTACCTCGGGGTACCTCACGATTACG CTCACAAAAGAAAACAAAGGTCAAGAATTTCAAGATTTAGACCTTTTGACCCGGCTCCTGGCTCCACGTAAGACC AAATCAGGACCGATGATTGAAGCACTTCCTTCTGAGGACAACGATGAAGATAAACTCGTGTCACAGATTGACAAT CTATCTTTAAACAAAGACGAATTACTAGAAGCGGTCGAAAACGATTGGCAGCTGCCCCAGCAACTTCCTCAAGAT CTTCCTTCACTCGAAACCTCCGTTCAGAAGTATTATGGCTTTTTAAATCTGCATTCCGGATATTTCAGACACGTC GTACATACGGAAAACGAGGTTAATGAACTAGGTACTGACGTCGAATCTTGTCCAGCTAGTGAAAGACGGAGACTC CGGATCCAACATGAAGATGACAAGTGGGACGAAGAATACTATATGGCAGACTATGCAGATGATGAATATATCCAG GAGCTGCTTAACTGGGTATCTCCACAGCTCATCTCCAATGAAGATATTCAGTACACAGACGAAGAAAAAGAAACA ATGCTGCGTTTGCCTCGCAAAGAATATCTCGCGAGTCCATTAGAGACTCATAATATTTATCTCACTCTTATAACA CTGCTTTTCTCGTACGCATATGATTCGCGGACAACTCAGTCGGACCCAACGCCGGAAAGTGCGTGGACGATTTGC AGCTTAACACCGGCTTTTTCAGCGCTCGACCCACCCAATATCACAACCAAAGACTCCCGGGCCTTTGTACTTGAC GAAGTAACAGAGATTCTTATATCCTCTTATAGACGAGTGCTTGCTTTTCCTCTATATCGTTCGTTCGCTTTGGCC GAGGCTTGCCAAAAAGACGTGGCGCGCATTCTATGCAAAGGAAAAAGGCTTTTGATTCGGTGCCTGTTGGAAATG AAGCAAATTCTTGACCACCATGAGGTGTACTACGTTTACAGCAAGATTTGGGTCGATGACTTCTGTTCATGGGTT CAGAGTCATGCTAGCGACGAGACACTCAAAGAACTAGGAGAGTTAATGTCAAAGGCCAAGGTGGTGAAAAGCTCC ATCGGTTGGGACTTGGAAGAGTTGGAGGCTGCCACCCTTGAGGCTACCAATCGGGAGGCTGACAGCGACGACGAA TAA
Transcript	>Agabi119p4\|061620 ATGATCACGCCTCGCTTTACCTGCTCTCAAACGTACGAATCGGTCGTCGTTTCTGTATATTGTCCATCTATTCGT GCCGCGGACGTCGAAATCCACGTCGACGCCAATCTGCTCTCGCTCCACGTCAATCCATACTTTCTGCGACTGACG TTCTCCCATTCGCTTCTGGAAGATGATGCGTCCTCCGCAAATTATAATCCTACCTCGGGGTACCTCACGATTACG CTCACAAAAGAAAACAAAGGTCAAGAATTTCAAGATTTAGACCTTTTGACCCGGCTCCTGGCTCCACGTAAGACC AAATCAGGACCGATGATTGAAGCACTTCCTTCTGAGGACAACGATGAAGATAAACTCGTGTCACAGATTGACAAT CTATCTTTAAACAAAGACGAATTACTAGAAGCGGTCGAAAACGATTGGCAGCTGCCCCAGCAACTTCCTCAAGAT CTTCCTTCACTCGAAACCTCCGTTCAGAAGTATTATGGCTTTTTAAATCTGCATTCCGGATATTTCAGACACGTC GTACATACGGAAAACGAGGTTAATGAACTAGGTACTGACGTCGAATCTTGTCCAGCTAGTGAAAGACGGAGACTC CGGATCCAACATGAAGATGACAAGTGGGACGAAGAATACTATATGGCAGACTATGCAGATGATGAATATATCCAG GAGCTGCTTAACTGGGTATCTCCACAGCTCATCTCCAATGAAGATATTCAGTACACAGACGAAGAAAAAGAAACA ATGCTGCGTTTGCCTCGCAAAGAATATCTCGCGAGTCCATTAGAGACTCATAATATTTATCTCACTCTTATAACA CTGCTTTTCTCGTACGCATATGATTCGCGGACAACTCAGTCGGACCCAACGCCGGAAAGTGCGTGGACGATTTGC AGCTTAACACCGGCTTTTTCAGCGCTCGACCCACCCAATATCACAACCAAAGACTCCCGGGCCTTTGTACTTGAC GAAGTAACAGAGATTCTTATATCCTCTTATAGACGAGTGCTTGCTTTTCCTCTATATCGTTCGTTCGCTTTGGCC GAGGCTTGCCAAAAAGACGTGGCGCGCATTCTATGCAAAGGAAAAAGGCTTTTGATTCGGTGCCTGTTGGAAATG AAGCAAATTCTTGACCACCATGAGGTGTACTACGTTTACAGCAAGATTTGGGTCGATGACTTCTGTTCATGGGTT CAGAGTCATGCTAGCGACGAGACACTCAAAGAACTAGGAGAGTTAATGTCAAAGGCCAAGGTGGTGAAAAGCTCC ATCGGTTGGGACTTGGAAGAGTTGGAGGCTGCCACCCTTGAGGCTACCAATCGGGAGGCTGACAGCGACGACGAA TAA
Gene	>Agabi119p4\|061620 ATGATCACGCCTCGCTTTACCTGCTCTCAAACGTACGAATCGGTCGTCGTTTCTGTATATTGTCCATCTATTCGT GTATGCCGCTACAACCGCCCTCTTCTTTTTTCACGTAACTGATGTTCAAGATCCCGATGTATGCCAAAGTAGGCC GCGGACGTCGAAATCCACGTCGACGCCAATCTGCTCTCGCTCCACGTCAATCCATACTTTCTGCGACTGACGTTC TCCCATTCGCTTCTGGAAGATGATGCGTCCTCCGCAAATTATAATCCTACCTCGGGGTACCTCACGATTACGCTC ACAAAAGAAAACAAAGGTCAAGAATTTCAAGATTTAGACCTTTTGACCCGGCTCCTGGCTCCACGTAAGACCAAA TCAGGACCGATGATTGAAGCACTTCCTTCTGAGGACAACGATGAAGATAAACTCGTGTCACAGATTGACAATCTA TCTTTAAACAAAGACGAATTACTAGAAGGCAATCACTCCATTTCTGACATTATACCCTCACTCATTTAAGGATTC AGCGGTCGAAAACGATTGGCAGCTGCCCCAGCAACTTCCTCAAGATCTTCCTTCACTCGAAACCTCCGTTCAGAA GTATTATGGCTTTTTAAATCTGCATTCCGGATATTTCAGACACGTCGTACATACGGAAAACGAGGTTAATGAACT AGGTACTGACGTCGAATCTTGTCCAGCTAGTGAAAGACGGAGACTCCGGATCCAACATGAAGATGACAAGTGGGA CGAAGAATACTATATGTAAATGCGAAGACTTTGGACATATGACATTTAAAGGCTCATACGGGACGTTTAGGGCAG ACTATGCAGATGATGAATATATCCAGGAGCTGCTTAACTGGGTATCTCCACAGCTCATCTCCAATGAAGATATTC AGTACACAGACGAAGAAAAAGAAACAATGCTGCGTTTGCCTCGCAAAGAATGTAAGCCTTGGATCTTATATCATC GAACTATCTAATCTCACCCATTGCGGAAAATTTTTCAAGATCTCGCGAGTCCATTAGAGACTCATAATATTTATC TCACTCTTATAACACTGCTTTTCTCGTACGCATATGATTCGCGGACAACTCAGTCGGACCCAACGCCGGAAAGTG CGTGGACGATTTGCAGCTTAACACCGGCTTTTTCAGCGCTCGACCCACCCAATATCACAACCAAAGACTCCCGGG CCTTTGTACTTGACGAAGTAACAGAGATTCTTATATCCTCTTATAGACGAGTGCTTGCTTTTCCTCTATATCGTT CGTTCGCTTTGGCCGAGGCTTGCCAAAAAGACGTGGCGCGCATTCTATGCAAAGGAAAAAGGCTTTTGATTCGGT GCCTGTTGGAAATGAAGCAAATTCTTGACCACCATGAGGTGTACTACGTTTACAGCAAGATTTGGGTCGATGACT TCTGTTCATGGGTTCAGAGTCATGCTAGGTTAGTTCAATCTTCTCACCTAACGCAACGCTGCATTTGTTGAACGG TCTATTTCTCAAAGCGACGAGACACTCAAAGAACTAGGAGAGTTAATGTCAAAGGCCAAGGTGGTGAAAAGCTCC ATCGGTTGGGACTTGGAAGAGTTGGAGGCTGCCACCCTTGAGGCTACCAATCGGGAGGCTGACAGCGACGACGAA TAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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