© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|061200 |
| Gene name | |
| Location | scaffold_03b:187776..190393 |
| Strand | + |
| Gene length (bp) | 2617 |
| Transcript length (bp) | 2247 |
| Coding sequence length (bp) | 2247 |
| Protein length (aa) | 749 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12230 | PRP21_like_P | Pre-mRNA splicing factor PRP21 like protein | 2.6E-43 | 210 | 420 |
| PF01805 | Surp | Surp module | 1.4E-17 | 35 | 85 |
| PF01805 | Surp | Surp module | 1.1E-15 | 144 | 195 |
| PF00240 | ubiquitin | Ubiquitin family | 1.1E-05 | 677 | 743 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 25 | 498 | 3.0E-84 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 25 | 498 | 2.0E-83 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 25 | 498 | 3.0E-83 |
| sp|Q8RXF1|SF3A1_ARATH | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 | 25 | 512 | 4.0E-58 |
| sp|O13900|SA114_SCHPO | Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 | 24 | 446 | 2.0E-53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 25 | 498 | 3.0E-84 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 25 | 498 | 2.0E-83 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 25 | 498 | 3.0E-83 |
| sp|Q8RXF1|SF3A1_ARATH | Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2 | 25 | 512 | 4.0E-58 |
| sp|O13900|SA114_SCHPO | Pre-mRNA-splicing factor sap114 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap114 PE=1 SV=1 | 24 | 446 | 2.0E-53 |
| sp|Q86A14|SF3A1_DICDI | Probable splicing factor 3A subunit 1 OS=Dictyostelium discoideum GN=sf3a1 PE=3 SV=1 | 132 | 251 | 7.0E-15 |
| sp|Q15459|SF3A1_HUMAN | Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1 | 644 | 744 | 4.0E-09 |
| sp|A2VDN6|SF3A1_BOVIN | Splicing factor 3A subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1 | 644 | 744 | 4.0E-09 |
| sp|Q8K4Z5|SF3A1_MOUSE | Splicing factor 3A subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1 | 644 | 744 | 5.0E-08 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0006396 | RNA processing | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|061200 MALVNGVNGAADVHSMGNILRFSSGLILPPPEIKAVIDKTATFVANSQNPPQFEDKIRENQRSDPKFSFLNPIDP YHAYYRHRLDKISRGESLNDDAAPDELVDGAPVDGVLPTQDLPDVADIGIEPPAPEFILDMPNISPIDLDIMKLT ALFTARRGHTFLATLSAKEGRNYQFDFLRPTHSLFGYFNRLVEQYSKNLERGGCCWLRPREAERIAFAEIDWHDY AIVQTIEFTGADATSELPPPMSVQEVENMTLAQKRMAAMIMENTAEDVEAHRARQAAAEAEAARTAGKVTVVVDN DDAAMEESDDEKDVEKKRKDEEERQRELARAHAMQPNVGPMKIRTDYVPKIGSKSAKATMTTCSICGQQIPVDEL QEHMRIELLDPKWKEQRDVLEARKAQASELQRGANVVSSLRNLARTRVDIFGTETDEERRKREEEEEREKRKERE KVVWDGHTASKANTLDKYSTNVNFDEQIAAIHRAKGLGPAEVNAIGPGIGPAAIPPPLTSLPPPPASLPAPPIHT HAPSTATVSSGPTPASMAPTPAPVMLPPLHYQGLDAAQPFAYSPPLNGNGNGNGGGAAGLGTSSRQAALAAANAQ AQQLQAGMVRTADQMLADGEGTPVQDDVIPPAKRQRVAKLPGGAMYPEADWIAMHPHPISLRVQLPDDSSKPEWK LDGSVVLVPDLPMTLLVSTLRDRIKIATGSALSASRMRISYLGKMLTNSTTIGSYNLEDEDMLVLSVSDARRR* |
| Coding | >Agabi119p4|061200 ATGGCCCTCGTCAACGGCGTCAACGGCGCTGCAGATGTCCACTCCATGGGCAACATCCTGCGTTTCTCCAGTGGT CTCATCCTCCCCCCGCCAGAAATAAAAGCTGTCATCGACAAAACAGCAACCTTTGTCGCCAACTCTCAAAATCCA CCTCAATTCGAGGACAAAATCCGAGAGAACCAACGCTCGGATCCAAAATTCTCTTTCCTCAATCCTATAGACCCC TACCACGCGTATTATCGACACCGCCTCGACAAAATTTCCCGTGGAGAATCTCTAAATGACGACGCAGCTCCTGAC GAACTCGTTGATGGTGCCCCGGTTGATGGTGTATTGCCTACTCAAGACCTGCCTGACGTTGCCGACATCGGTATT GAGCCTCCTGCACCAGAGTTCATATTGGATATGCCGAATATCAGTCCAATTGATCTGGATATTATGAAATTGACG GCTCTGTTTACTGCTCGTAGAGGACACACTTTTCTTGCGACCCTCTCAGCCAAAGAGGGTCGAAATTACCAATTT GACTTCCTTCGACCCACACATTCCCTTTTTGGGTATTTCAACCGCCTTGTGGAACAATATAGCAAGAACCTGGAG CGAGGTGGATGCTGTTGGCTCAGGCCAAGAGAGGCTGAACGAATTGCGTTCGCTGAAATTGACTGGCACGACTAT GCTATTGTCCAAACGATCGAATTCACTGGTGCGGACGCGACTTCGGAACTTCCACCGCCGATGAGTGTCCAAGAG GTCGAGAATATGACTCTTGCACAGAAGCGCATGGCTGCTATGATCATGGAAAACACAGCTGAAGATGTTGAAGCT CACCGTGCGCGTCAAGCCGCCGCTGAGGCAGAGGCAGCTAGAACCGCAGGTAAGGTCACGGTAGTAGTCGACAAT GACGATGCAGCTATGGAGGAAAGTGACGATGAAAAGGATGTAGAGAAGAAGAGAAAGGACGAGGAGGAGAGACAG AGGGAGCTGGCTAGGGCTCATGCTATGCAACCTAATGTCGGTCCCATGAAAATCCGGACGGACTATGTACCCAAA ATTGGTTCAAAGAGTGCCAAAGCAACAATGACCACATGTTCTATCTGTGGTCAGCAAATTCCTGTCGACGAATTA CAAGAGCACATGCGTATTGAGCTTCTCGATCCCAAATGGAAAGAGCAACGTGATGTTCTCGAAGCACGTAAAGCA CAAGCTTCAGAACTTCAACGTGGAGCCAATGTTGTCTCATCACTCAGAAACTTGGCCCGAACACGTGTGGACATC TTTGGTACCGAGACAGACGAGGAGCGGAGGAAACGTGAAGAGGAAGAGGAAAGAGAGAAAAGAAAGGAGAGGGAG AAGGTTGTTTGGGATGGACATACCGCTTCGAAAGCCAATACGCTGGACAAGTACTCTACAAATGTCAACTTTGAC GAACAAATCGCGGCTATTCATCGTGCAAAGGGTCTGGGACCTGCCGAGGTCAATGCCATCGGCCCTGGAATTGGT CCAGCCGCTATTCCGCCTCCATTAACTTCATTGCCGCCACCACCGGCTTCTTTGCCTGCTCCACCCATTCATACT CATGCACCTTCAACGGCAACGGTTTCATCAGGACCGACTCCGGCATCGATGGCTCCAACCCCGGCACCGGTTATG CTTCCACCGCTGCATTATCAAGGACTTGACGCCGCACAGCCTTTTGCTTATTCACCTCCTTTGAATGGGAACGGA AATGGCAATGGCGGTGGAGCTGCCGGATTAGGAACATCGAGTCGACAGGCTGCATTAGCTGCTGCCAATGCTCAA GCTCAACAGCTTCAAGCAGGGATGGTACGAACGGCGGACCAAATGTTAGCCGATGGTGAAGGTACACCTGTTCAA GACGATGTTATACCTCCTGCAAAACGCCAGAGAGTGGCCAAGCTGCCCGGTGGAGCGATGTACCCCGAAGCTGAC TGGATCGCGATGCATCCCCATCCTATTTCCTTACGAGTACAATTGCCCGATGATTCATCGAAACCAGAATGGAAA TTGGATGGATCAGTCGTTTTGGTGCCTGATTTGCCGATGACGCTTTTGGTTAGTACGTTGAGAGATAGGATCAAG ATAGCGACTGGGAGTGCATTGTCGGCATCACGGATGAGGATATCGTATTTGGGCAAGATGTTGACAAACTCGACG ACGATTGGGAGTTACAACTTGGAAGATGAGGACATGTTGGTGTTGAGCGTGAGCGACGCCAGGAGGAGGTAA |
| Transcript | >Agabi119p4|061200 ATGGCCCTCGTCAACGGCGTCAACGGCGCTGCAGATGTCCACTCCATGGGCAACATCCTGCGTTTCTCCAGTGGT CTCATCCTCCCCCCGCCAGAAATAAAAGCTGTCATCGACAAAACAGCAACCTTTGTCGCCAACTCTCAAAATCCA CCTCAATTCGAGGACAAAATCCGAGAGAACCAACGCTCGGATCCAAAATTCTCTTTCCTCAATCCTATAGACCCC TACCACGCGTATTATCGACACCGCCTCGACAAAATTTCCCGTGGAGAATCTCTAAATGACGACGCAGCTCCTGAC GAACTCGTTGATGGTGCCCCGGTTGATGGTGTATTGCCTACTCAAGACCTGCCTGACGTTGCCGACATCGGTATT GAGCCTCCTGCACCAGAGTTCATATTGGATATGCCGAATATCAGTCCAATTGATCTGGATATTATGAAATTGACG GCTCTGTTTACTGCTCGTAGAGGACACACTTTTCTTGCGACCCTCTCAGCCAAAGAGGGTCGAAATTACCAATTT GACTTCCTTCGACCCACACATTCCCTTTTTGGGTATTTCAACCGCCTTGTGGAACAATATAGCAAGAACCTGGAG CGAGGTGGATGCTGTTGGCTCAGGCCAAGAGAGGCTGAACGAATTGCGTTCGCTGAAATTGACTGGCACGACTAT GCTATTGTCCAAACGATCGAATTCACTGGTGCGGACGCGACTTCGGAACTTCCACCGCCGATGAGTGTCCAAGAG GTCGAGAATATGACTCTTGCACAGAAGCGCATGGCTGCTATGATCATGGAAAACACAGCTGAAGATGTTGAAGCT CACCGTGCGCGTCAAGCCGCCGCTGAGGCAGAGGCAGCTAGAACCGCAGGTAAGGTCACGGTAGTAGTCGACAAT GACGATGCAGCTATGGAGGAAAGTGACGATGAAAAGGATGTAGAGAAGAAGAGAAAGGACGAGGAGGAGAGACAG AGGGAGCTGGCTAGGGCTCATGCTATGCAACCTAATGTCGGTCCCATGAAAATCCGGACGGACTATGTACCCAAA ATTGGTTCAAAGAGTGCCAAAGCAACAATGACCACATGTTCTATCTGTGGTCAGCAAATTCCTGTCGACGAATTA CAAGAGCACATGCGTATTGAGCTTCTCGATCCCAAATGGAAAGAGCAACGTGATGTTCTCGAAGCACGTAAAGCA CAAGCTTCAGAACTTCAACGTGGAGCCAATGTTGTCTCATCACTCAGAAACTTGGCCCGAACACGTGTGGACATC TTTGGTACCGAGACAGACGAGGAGCGGAGGAAACGTGAAGAGGAAGAGGAAAGAGAGAAAAGAAAGGAGAGGGAG AAGGTTGTTTGGGATGGACATACCGCTTCGAAAGCCAATACGCTGGACAAGTACTCTACAAATGTCAACTTTGAC GAACAAATCGCGGCTATTCATCGTGCAAAGGGTCTGGGACCTGCCGAGGTCAATGCCATCGGCCCTGGAATTGGT CCAGCCGCTATTCCGCCTCCATTAACTTCATTGCCGCCACCACCGGCTTCTTTGCCTGCTCCACCCATTCATACT CATGCACCTTCAACGGCAACGGTTTCATCAGGACCGACTCCGGCATCGATGGCTCCAACCCCGGCACCGGTTATG CTTCCACCGCTGCATTATCAAGGACTTGACGCCGCACAGCCTTTTGCTTATTCACCTCCTTTGAATGGGAACGGA AATGGCAATGGCGGTGGAGCTGCCGGATTAGGAACATCGAGTCGACAGGCTGCATTAGCTGCTGCCAATGCTCAA GCTCAACAGCTTCAAGCAGGGATGGTACGAACGGCGGACCAAATGTTAGCCGATGGTGAAGGTACACCTGTTCAA GACGATGTTATACCTCCTGCAAAACGCCAGAGAGTGGCCAAGCTGCCCGGTGGAGCGATGTACCCCGAAGCTGAC TGGATCGCGATGCATCCCCATCCTATTTCCTTACGAGTACAATTGCCCGATGATTCATCGAAACCAGAATGGAAA TTGGATGGATCAGTCGTTTTGGTGCCTGATTTGCCGATGACGCTTTTGGTTAGTACGTTGAGAGATAGGATCAAG ATAGCGACTGGGAGTGCATTGTCGGCATCACGGATGAGGATATCGTATTTGGGCAAGATGTTGACAAACTCGACG ACGATTGGGAGTTACAACTTGGAAGATGAGGACATGTTGGTGTTGAGCGTGAGCGACGCCAGGAGGAGGTAA |
| Gene | >Agabi119p4|061200 ATGGCCCTCGTCAACGGCGTCAACGGCGCTGCAGATGTCCACTCCATGGGCAACATCCTGCGTTTCTCCAGTGGT CTCATCCTCCCCCCGCCAGAAATAAAAGGTCCGTCTCTTCGCCCTTGACACCCACCTCGTGCTCACCTCTTGCAG CTGTCATCGACAAAACAGCAACCTTTGTCGCCAACTCTCAAAATCCACCTCAATTCGAGGACAAAATCCGAGAGA ACCAACGCTCGGATCCAAAATTCTCTTTCCTCAATCCTATAGACCCCTACCACGCGTATTATCGACACCGCCTCG ACAAAATTTCCCGTGGAGAATCTCTAAATGACGACGCAGCTCCTGACGAACTCGTTGATGGTGCCCCGGTTGATG GTGTATTGCCTACTCAAGACCTGCCTGACGTTGCCGACATCGGTATTGAGCCTCCTGCACCAGAGTTCATATTGG ATATGCCGAATATCAGTCCAATTGATCTGTTCGTCTTCCCCCGTTCACTCTGGGATCTGTCGACTAACATTCAAT GACAGGGATATTATGAAATTGACGGCTCTGTTTACTGCTCGTAGAGGACACACTTTTCTTGCGACCCTCTCAGCC AAAGAGGGTCGAAATTACCAATTTGACTTCCTTCGACCCACACATTCCCTTTTTGGGTATTTCAACCGCCTTGTG GAACAATATAGCAAGGTTCTCTATCCAAATAACGACGTTTTACAGCAACTCAAAGAGAAATCAGAACCTGGAGCG AGGTGGATGCTGTTGGCTCAGGCCAAGAGGTATGCTAAATGGCAGCGAAATAAACGTGAAAAGGATCAAAAGAGG CAAGATGATCAAGAGGCTGAACGAAGTGAATACTATTTTTATTTATCTCCACACCGCACGTTATTGACTACTTTT TGTTCAGTTGCGTTCGCTGAAATTGACTGGCACGACTATGCTATTGTCCAAACGATCGAATTCACTGGTGCGGAC GCGACTTCGGAACTTCCACCGCCGATGAGTGTCCAAGAGGTCGAGAATATGACTCTTGCACAGAAGCGCATGGCT GCTATGATCATGGAAAACACAGCTGAAGATGTTGAAGCTCACCGTGCGCGTCAAGCCGCCGCTGAGGCAGAGGCA GCTAGAACCGCAGGTAAGGTCACGGTAGTAGTCGACAATGACGATGCAGCTATGGAGGAAAGTGACGATGAAAAG GATGTAGAGAAGAAGAGAAAGGACGAGGAGGAGAGACAGAGGGAGCTGGCTAGGGCTCATGCTATGCAACCTAAT GTCGGTCCCATGAAAATCCGGACGGACTATGTACCCAAAAGTGAGTATTTGCCAACCATTCGCTATCGATACATT CCAATCTTTTTTTTCAGTTGGTTCAAAGAGTGCCAAAGCAACAATGACCACATGTTCTATCTGTGGTCAGCAAAT TCCTGTCGACGAATTACAAGAGCACATGCGTATTGAGCTTCTCGATCCCAAATGGAAAGAGCAACGTGATGTTCT CGAAGCACGTAAAGCACAAGCTTCAGAACTTCAACGTGGAGCCAATGTTGTCTCATCACTCAGAAACTTGGCCCG AACACGTGTGGACATCTTTGGTACCGAGACAGACGAGGAGCGGAGGAAACGTGAAGAGGAAGAGGAAAGAGAGAA AAGAAAGGAGAGGGAGAAGGTTGTTTGGGATGGACATACCGCTTCGAAAGCCAATACGCTGGACAAGTACTCTAC AAATGTCAACTTTGACGAACAAATCGCGGCTATTCATCGTGCAAAGGGTCTGGGACCGTAAGTCTTTCCTTTTCT ATTATTGGTATCAAAAATTGAGCTATTGCTTTACAGTGCCGAGGTCAATGCCATCGGCCCTGGAATTGGTCCAGC CGCTATTCCGCCTCCATTAACTTCATTGCCGCCACCACCGGCTTCTTTGCCTGCTCCACCCATTCATACTCATGC ACCTTCAACGGCAACGGTTTCATCAGGACCGACTCCGGCATCGATGGCTCCAACCCCGGCACCGGTTATGCTTCC ACCGCTGCATTATCAAGGACTTGACGCCGCACAGCCTTTTGCTTATTCACCTCCTTTGAATGGGAACGGAAATGG CAATGGCGGTGGAGCTGCCGGATTAGGAACATCGAGTCGACAGGCTGCATTAGCTGCTGCCAATGCTCAAGCTCA ACAGCTTCAAGCAGGGATGGTACGAACGGCGGACCAAATGTTAGCCGATGGTGAAGGTACACCTGTTCAAGACGA TGTTATACCTCCTGCAAAACGCCAGAGAGTGGCCAAGCTGCCCGGTGGAGCGATGTACCCCGAAGCTGACTGGAT CGCGATGCATCCCCATCCTATTTCCTTACGAGTACAATTGCCCGATGATTCATCGAAACCAGAATGGAAATTGGA TGGATCAGTCGTTTTGGTGCCTGATTTGCCGATGACGCTTTTGGTTAGTACGTTGAGAGATAGGATCAAGATAGC GACTGGGAGTGCATTGTCGGCATCACGGATGAGGATATCGTATTTGGGCAAGATGTTGACAAACTCGACGACGAT TGGGAGTTACAACTTGGAAGATGAGGACATGTTGGTGTTGAGCGTGAGCGACGCCAGGAGGAGGTAA |