Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|060720
Gene name
Locationscaffold_03b:71651..74681
Strand+
Gene length (bp)3030
Transcript length (bp)2352
Coding sequence length (bp)2352
Protein length (aa) 784

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 1.8E-10 258 404
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 2.2E-05 17 56

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P49412|PRIB_LENED Protein priB OS=Lentinula edodes GN=priB PE=2 SV=1 4 558 0.0E+00
sp|Q74Z37|SEF1_ASHGO Putative transcription factor SEF1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEF1 PE=3 SV=1 14 583 2.0E-12
sp|Q59UY7|SEF1_CANAL Transcriptional regulatory protein SEF1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEF1 PE=1 SV=1 235 569 9.0E-09

GO

GO Term Description Terminal node
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0006351 transcription, DNA-templated Yes
GO:0065007 biological regulation No
GO:0019222 regulation of metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0005488 binding No
GO:0009889 regulation of biosynthetic process No
GO:0140110 transcription regulator activity No
GO:0044238 primary metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046872 metal ion binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0090304 nucleic acid metabolic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003676 nucleic acid binding No
GO:0031323 regulation of cellular metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0044249 cellular biosynthetic process No
GO:0008152 metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0003674 molecular_function No
GO:0018130 heterocycle biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:0010468 regulation of gene expression No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0050789 regulation of biological process No
GO:0043170 macromolecule metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043167 ion binding No
GO:0044237 cellular metabolic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0019438 aromatic compound biosynthetic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0050794 regulation of cellular process No
GO:0016070 RNA metabolic process No
GO:0009987 cellular process No
GO:0051252 regulation of RNA metabolic process No
GO:2001141 regulation of RNA biosynthetic process No
GO:0009058 biosynthetic process No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0043169 cation binding No
GO:1903506 regulation of nucleic acid-templated transcription No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|060720
MDAAKPPSKPQVIRGARACTVCRAAKMKCVGAENGQTQCQRCKRANVECVFEKHRRGRKPGSKLSEASKMLRRLE
KDLNSAKLKTQPADPGMPTSYPASESHNIPQDVIYGTLPQSDSAYSSASHFPPPDLPPLNLPARPSAPPSTAPPS
TAYPTSATSSHTMSVVDDDDDDPDKSDTHLFPAKLIKQTQRNSFFRIILNTEETPVSTSSPPNRGSSYTPPQSKP
PPAKPTIPDPISSGLITEADASLLFDALYLRLNPFINIFDPQLHTHTYVRNRCPLLFSTLIMAAAKFFKPEVFKQ
CQKLANDLAFRAFQESWKSVEVVQAFACLTYWREPEDNRTWTYIGYACRMAVELGLNRYTKSSQTETTLQKLERR
NRERTYLILFVHDRSLSTQTGRHWMLPENDELIENSGVWHRHAVDDKIRPEDVIIAAFVELRCIAAVTTDVFSAS
KGSGANDINYEVVLRNCNAQLNKWAENWQAEMGEANGESFHFAFLKFFRLYVRVFLNYFGIASGTSQHHSVQAHS
VCYCSAKESLQIVIVDFTKLSMLRYGQETITVMTAYAAIILLKLLRSPTSPKEVVDTGEVYSLILKSADAYETAG
NPANNAAVHARFLRSLVEDDKYRFGPRDGGVQIDPRLQSQNNPHHGSVQNSPTQTYPHPVSAPANRDAYFSSPSH
VQQQQPQSSQPQQQNGYYSQELTLRSGAGTNTTSSSSGGSNASMPYYPQNGYYFMSNNGMHATEQDQSYYKNMFI
ELGFGEPNPPVPQHAHQAPMAYSHHMQHANYGH*
Coding >Agabi119p4|060720
ATGGACGCCGCAAAACCCCCCTCAAAGCCCCAGGTCATCCGCGGCGCACGCGCGTGCACCGTCTGTCGTGCTGCA
AAGATGAAATGCGTCGGCGCAGAAAACGGCCAGACACAGTGCCAACGCTGCAAGCGCGCCAACGTCGAATGTGTC
TTTGAAAAACACCGGCGCGGTCGTAAACCAGGCTCAAAATTGTCTGAGGCCTCGAAGATGCTTCGCCGCCTCGAA
AAAGATCTCAACTCGGCAAAGCTAAAGACCCAGCCCGCCGACCCCGGAATGCCCACCTCATACCCAGCATCAGAG
TCTCACAACATCCCTCAAGACGTTATCTACGGAACCCTCCCGCAGTCGGATTCTGCGTACTCTTCGGCCTCCCAC
TTTCCTCCCCCAGACCTCCCTCCGCTGAATCTCCCCGCTCGTCCCTCCGCTCCACCCTCCACCGCCCCGCCATCA
ACCGCTTACCCAACCTCCGCTACCAGCTCTCATACCATGAGTGTCGTCGACGACGATGACGATGACCCAGACAAA
AGTGATACCCATTTATTCCCCGCCAAGCTGATCAAGCAAACTCAACGCAACTCCTTCTTCCGCATTATCCTCAAT
ACAGAAGAGACACCCGTGTCCACTTCTTCTCCACCCAACCGTGGCTCTTCCTACACCCCTCCCCAATCCAAACCT
CCTCCCGCCAAGCCCACCATTCCTGATCCCATCTCCAGCGGCCTCATCACCGAGGCCGATGCAAGTCTCCTTTTC
GATGCCCTCTATCTACGCCTCAATCCTTTCATCAATATATTTGACCCTCAACTTCACACCCATACTTATGTCCGC
AATCGCTGCCCGTTACTATTTTCAACCTTAATTATGGCAGCTGCCAAGTTTTTCAAACCGGAAGTATTCAAACAG
TGTCAAAAATTAGCCAACGATCTCGCTTTCCGTGCTTTCCAGGAATCATGGAAAAGTGTCGAAGTCGTCCAGGCC
TTTGCCTGCCTCACTTATTGGAGGGAACCTGAGGACAACCGTACTTGGACATATATTGGATACGCTTGCCGCATG
GCTGTCGAACTTGGACTCAACCGTTATACAAAATCTTCCCAAACTGAGACCACCCTGCAAAAACTCGAGCGTCGC
AACCGCGAACGCACTTACTTGATTTTGTTTGTTCACGACCGCAGCCTCAGCACCCAGACCGGTCGCCATTGGATG
CTCCCCGAGAATGACGAGCTTATCGAAAACTCCGGCGTTTGGCATCGCCATGCAGTCGATGATAAAATCCGTCCC
GAGGATGTCATTATAGCCGCCTTTGTCGAACTGCGCTGCATCGCCGCCGTGACGACCGACGTCTTTAGTGCGTCA
AAAGGCTCCGGAGCCAATGATATCAACTACGAAGTCGTATTGCGCAATTGCAACGCCCAACTCAACAAGTGGGCT
GAGAACTGGCAAGCTGAAATGGGAGAAGCCAACGGAGAATCTTTCCACTTTGCGTTCCTCAAATTCTTCCGATTG
TATGTCAGAGTGTTCCTAAATTACTTTGGCATTGCTTCGGGGACATCCCAGCACCATAGTGTGCAGGCACATTCT
GTGTGCTACTGCAGTGCTAAGGAGTCGTTGCAGATTGTTATCGTGGACTTTACAAAACTATCTATGCTGCGGTAT
GGACAAGAGACCATTACGGTAATGACCGCTTATGCCGCGATCATACTCCTCAAGCTTCTTCGCAGCCCCACGTCC
CCTAAGGAGGTTGTCGATACGGGAGAAGTTTACTCACTCATCTTGAAATCTGCCGACGCCTACGAAACCGCCGGG
AACCCGGCCAACAACGCAGCTGTTCACGCCCGTTTTTTGCGCAGTCTTGTTGAGGACGACAAATACCGGTTCGGG
CCAAGGGACGGCGGTGTTCAGATTGATCCCCGACTTCAAAGTCAGAACAATCCGCACCACGGTTCTGTCCAGAAT
TCACCGACGCAAACATACCCCCATCCAGTTTCTGCTCCGGCCAACCGAGACGCCTATTTTTCCTCTCCTTCCCAC
GTTCAACAACAGCAACCTCAGTCAAGTCAGCCACAGCAGCAGAATGGGTACTACTCTCAGGAGCTAACCCTTCGC
AGCGGCGCGGGGACGAATACCACGTCGAGCAGTAGCGGCGGCAGTAATGCTTCCATGCCATACTATCCTCAAAAC
GGCTACTATTTCATGAGCAACAACGGGATGCATGCGACGGAGCAGGATCAGAGCTACTACAAGAATATGTTCATT
GAACTCGGCTTCGGCGAACCGAATCCGCCCGTGCCGCAACATGCACATCAAGCTCCGATGGCATATTCACACCAC
ATGCAACATGCCAACTACGGGCACTAA
Transcript >Agabi119p4|060720
ATGGACGCCGCAAAACCCCCCTCAAAGCCCCAGGTCATCCGCGGCGCACGCGCGTGCACCGTCTGTCGTGCTGCA
AAGATGAAATGCGTCGGCGCAGAAAACGGCCAGACACAGTGCCAACGCTGCAAGCGCGCCAACGTCGAATGTGTC
TTTGAAAAACACCGGCGCGGTCGTAAACCAGGCTCAAAATTGTCTGAGGCCTCGAAGATGCTTCGCCGCCTCGAA
AAAGATCTCAACTCGGCAAAGCTAAAGACCCAGCCCGCCGACCCCGGAATGCCCACCTCATACCCAGCATCAGAG
TCTCACAACATCCCTCAAGACGTTATCTACGGAACCCTCCCGCAGTCGGATTCTGCGTACTCTTCGGCCTCCCAC
TTTCCTCCCCCAGACCTCCCTCCGCTGAATCTCCCCGCTCGTCCCTCCGCTCCACCCTCCACCGCCCCGCCATCA
ACCGCTTACCCAACCTCCGCTACCAGCTCTCATACCATGAGTGTCGTCGACGACGATGACGATGACCCAGACAAA
AGTGATACCCATTTATTCCCCGCCAAGCTGATCAAGCAAACTCAACGCAACTCCTTCTTCCGCATTATCCTCAAT
ACAGAAGAGACACCCGTGTCCACTTCTTCTCCACCCAACCGTGGCTCTTCCTACACCCCTCCCCAATCCAAACCT
CCTCCCGCCAAGCCCACCATTCCTGATCCCATCTCCAGCGGCCTCATCACCGAGGCCGATGCAAGTCTCCTTTTC
GATGCCCTCTATCTACGCCTCAATCCTTTCATCAATATATTTGACCCTCAACTTCACACCCATACTTATGTCCGC
AATCGCTGCCCGTTACTATTTTCAACCTTAATTATGGCAGCTGCCAAGTTTTTCAAACCGGAAGTATTCAAACAG
TGTCAAAAATTAGCCAACGATCTCGCTTTCCGTGCTTTCCAGGAATCATGGAAAAGTGTCGAAGTCGTCCAGGCC
TTTGCCTGCCTCACTTATTGGAGGGAACCTGAGGACAACCGTACTTGGACATATATTGGATACGCTTGCCGCATG
GCTGTCGAACTTGGACTCAACCGTTATACAAAATCTTCCCAAACTGAGACCACCCTGCAAAAACTCGAGCGTCGC
AACCGCGAACGCACTTACTTGATTTTGTTTGTTCACGACCGCAGCCTCAGCACCCAGACCGGTCGCCATTGGATG
CTCCCCGAGAATGACGAGCTTATCGAAAACTCCGGCGTTTGGCATCGCCATGCAGTCGATGATAAAATCCGTCCC
GAGGATGTCATTATAGCCGCCTTTGTCGAACTGCGCTGCATCGCCGCCGTGACGACCGACGTCTTTAGTGCGTCA
AAAGGCTCCGGAGCCAATGATATCAACTACGAAGTCGTATTGCGCAATTGCAACGCCCAACTCAACAAGTGGGCT
GAGAACTGGCAAGCTGAAATGGGAGAAGCCAACGGAGAATCTTTCCACTTTGCGTTCCTCAAATTCTTCCGATTG
TATGTCAGAGTGTTCCTAAATTACTTTGGCATTGCTTCGGGGACATCCCAGCACCATAGTGTGCAGGCACATTCT
GTGTGCTACTGCAGTGCTAAGGAGTCGTTGCAGATTGTTATCGTGGACTTTACAAAACTATCTATGCTGCGGTAT
GGACAAGAGACCATTACGGTAATGACCGCTTATGCCGCGATCATACTCCTCAAGCTTCTTCGCAGCCCCACGTCC
CCTAAGGAGGTTGTCGATACGGGAGAAGTTTACTCACTCATCTTGAAATCTGCCGACGCCTACGAAACCGCCGGG
AACCCGGCCAACAACGCAGCTGTTCACGCCCGTTTTTTGCGCAGTCTTGTTGAGGACGACAAATACCGGTTCGGG
CCAAGGGACGGCGGTGTTCAGATTGATCCCCGACTTCAAAGTCAGAACAATCCGCACCACGGTTCTGTCCAGAAT
TCACCGACGCAAACATACCCCCATCCAGTTTCTGCTCCGGCCAACCGAGACGCCTATTTTTCCTCTCCTTCCCAC
GTTCAACAACAGCAACCTCAGTCAAGTCAGCCACAGCAGCAGAATGGGTACTACTCTCAGGAGCTAACCCTTCGC
AGCGGCGCGGGGACGAATACCACGTCGAGCAGTAGCGGCGGCAGTAATGCTTCCATGCCATACTATCCTCAAAAC
GGCTACTATTTCATGAGCAACAACGGGATGCATGCGACGGAGCAGGATCAGAGCTACTACAAGAATATGTTCATT
GAACTCGGCTTCGGCGAACCGAATCCGCCCGTGCCGCAACATGCACATCAAGCTCCGATGGCATATTCACACCAC
ATGCAACATGCCAACTACGGGCACTAA
Gene >Agabi119p4|060720
ATGGACGCCGCAAAACCCCCGTCAGTATCTTCTCCTCTTTTCTCCTCCCGCCCACCCGCTCACCTACACACAGCT
CAAAGCCCCAGGTCATCCGCGGCGCACGCGCGTGCACCGTCTGTCGTGCTGCAAAGGTCCATCTCCGCCTTACCC
TGCTGCCCATCACACCCCTCACCCCCGTCCCTAGATGAAATGCGTCGGCGCAGAAAACGGCCAGACACAGTGCCA
ACGCTGCAAGCGCGCCAACGTCGAGTCCGTTTTTCTTCCAACCCTGTTCGTTTGAATCCTGACCATCACCCCTCC
CAGATGTGTCTTTGAAAAACACCGGCGCGGTCGTAAACCAGGCTCAAAGTGAGTCGTCCTCTTTTATCCCTGCAA
ACAAGATGTAACCCATTCTCCAGATTGTCTGAGGCCTCGAAGATGCTTCGCCGCCTCGAAAAAGATCTCAACTCG
GCAAAGCTAAAGACCCAGCCCGCCGACCCCGGAATGCCCACCTCATACCCAGCATCAGAGTCTCACAACATCCCT
CAAGACGTTATCTACGGAACCCTCCCGCAGTCGGATTCTGCGTACTCTTCGGCCTCCCACTTTCCTCCCCCAGAC
CTCCCTCCGCTGAATCTCCCCGCTCGTCCCTCCGCTCCACCCTCCACCGCCCCGCCATCAACCGCTTACCCAACC
TCCGCTACCAGCTCTCATACCATGAGTGTCGTCGACGACGATGACGATGACCCAGACAAAAGTGATACCCATTTA
TTCCCCGCCAAGCTGATCAAGCAAACTCAACGCAACTCCTTCTTCCGCATTATCCTCAATACAGAAGAGACACCC
GTGTCCACTTCTTCTCCACCCAACCGTGGCTCTTCCTACACCCCTCCCCAATCCAAACCTCCTCCCGCCAAGCCC
ACCATTCCTGATCCCATCTCCAGCGGCCTCATCACCGAGGCCGATGCAAGTCTCCTTTTCGATGCCCTCTATCTA
CGCCTCAATCCTTTCATCAATATATTTGACCCTCAACTTCACACCCATACTTATGTCCGCAATCGCTGCCCGTTA
CTATTTTCAACCTTAATTATGGCAGCTGCCAAGTTTTTCAAACCGGAAGTATTCAAACAGTGTCAAAAATTAGCC
AACGATCTCGCTTTCCGTGCTTTCCAGGAATCATGGAAAAGTGTCGAAGTCGTCCAGGCCTTTGCCTGCCTCACT
TATTGGAGGGAACCTGAGGACAACGTAAGTCGCCCGGCCCTTGCCCTCCCCCCAATGCCTCTGTCTGACCCTTGC
TTTTAGCGTACTTGGACATATATTGGATACGTAAGGACTGATGCCCCTTCTATCCATCATCACCTTTCTAACCGT
GGATTTAGGCTTGCCGCATGGCTGTCGAACTTGGACTCAACCGTTATACAAAATCTTCCCAAACTGAGACCACCC
TGCAAAAACTCGAGCGTCGCAACCGCGAACGCACTTACTTGATTTTGTTTGTTCACGACCGCAGCCTCAGCACCC
AGACCGGTCGCCATTGGATGCTCCCCGAGAATGACGAGCTTATCGAAAACTCCGGCGTTTGGCATCGCCATGCAG
TCGATGATAAAATCCGTCCCGAGGATGTCATTATAGCCGCCTTTGTCGAACTGCGCTGCATCGCCGTATGCCAAA
CCTTCTTCTCAATCATGCCAAACCATTTATATCCCATTGACAGGCCGTGACGACCGACGTCTTTAGTGCGTCAAA
AGGCTCCGGAGCCAATGATATCAACTACGAAGTCGTATTGCGCAATTGCAACGCCCAACTCAACAAGTGGGCTGA
GAACTGGCAAGCTGAAATGGGAGAAGGTCAGATTCCTCGTCCATCCCTCGTGCTTTACTGACAAGACTGGTATTG
AATGCAGCCAACGGAGAATCTTTCCACTTTGCGTTCCTCAAATTCTTCCGATTGTATGTCAGAGTGTTCCTAAAT
TACTTTGGCATTGCTTCGGGGACATCCGTACGCCTCTTAGTTCTCCGCGGATCACCGTGCAGCTTTTTAAAAACT
CTCATTTAGCAGCACCATAGTGTGCAGGCACATTCTGTGTGCTACTGCAGTGCTAAGGAGTCGTTGCAGATTGTT
ATCGTGGACTTTACAAAACTATCTATGCTGGTATGATTGGCCTAGTGCTTTGGCAGGGCCATTCGAGATGTTGAC
CACATGCCCCACAGCGGTATGGACAAGAGACCATTACGGTAATGACCGCTTATGCCGCGATCATACTCCTCAAGG
TAATTTGTTGACTCTCATTGGGCTTTGATGAATCTCTTCACATGGCTATCTTTGGCAGCTTCTTCGCAGCCCCAC
GTCCCCTAAGGAGGTTGTCGATACGGGAGAAGTTTACTCACTCATCTTGAAATCTGCCGACGCCTACGAAACCGC
CGGGAACCCGGCCAACAACGCAGCTGTTCACGCCCGTTTTTTGCGCAGTCTTGTTGAGGACGACAAATACCGGTT
CGGGCCAAGGGACGGCGGTGTTCAGATTGATCCCCGACTTCAAAGTAAGATATGAATGCCGCATGTCCATCCGTT
GTCGGCGATCTATTTTTGTATACTGATGATGATATAATTCCAGGTCAGAACAATCCGCACCACGGTTCTGTCCAG
AATTCACCGACGCAAACATACCCCCATCCAGTTTCTGCTCCGGCCAACCGAGACGCCTATTTTTCCTCTCCTTCC
CACGTTCAACAACAGCAACCTCAGTCAAGTCAGCCACAGCAGCAGAATGGGTACTACTCTCAGGAGCTAACCCTT
CGCAGCGGCGCGGGGACGAATACCACGTCGAGCAGTAGCGGCGGCAGTAATGCTTCCATGCCATACTATCCTCAA
AACGGCTACTATTTCATGAGCAACAACGGGATGCATGCGACGGAGCAGGATCAGAGCTACTACAAGAATATGTTC
ATTGAACTCGGCTTCGGCGAACCGAATCCGCCCGTGCCGCAACATGCACATCAAGCTCCGATGGCATATTCACAC
CACATGCAACATGCCAACTACGGGCACTAA

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