Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|059440
Gene name
Locationscaffold_03a:1674690..1676147
Strand+
Gene length (bp)1457
Transcript length (bp)1050
Coding sequence length (bp)1050
Protein length (aa) 350

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01223 Endonuclease_NS DNA/RNA non-specific endonuclease 1.4E-58 74 312

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q10480|PNU1_SCHPO Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2 76 346 2.0E-92
sp|P08466|NUC1_YEAST Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1 19 348 3.0E-92
sp|P81203|NUC1_CUNEE Nuclease C1 OS=Cunninghamella echinulata var. echinulata GN=NUC1CE PE=1 SV=1 74 329 7.0E-79
sp|P81204|NUC1_SYNRA Nuclease OS=Syncephalastrum racemosum PE=1 SV=1 76 329 4.0E-75
sp|Q95NM6|NUCG_CAEEL Endonuclease G, mitochondrial OS=Caenorhabditis elegans GN=cps-6 PE=1 SV=1 17 311 7.0E-54
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Swissprot ID Swissprot Description Start End E-value
sp|Q10480|PNU1_SCHPO Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2 76 346 2.0E-92
sp|P08466|NUC1_YEAST Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1 19 348 3.0E-92
sp|P81203|NUC1_CUNEE Nuclease C1 OS=Cunninghamella echinulata var. echinulata GN=NUC1CE PE=1 SV=1 74 329 7.0E-79
sp|P81204|NUC1_SYNRA Nuclease OS=Syncephalastrum racemosum PE=1 SV=1 76 329 4.0E-75
sp|Q95NM6|NUCG_CAEEL Endonuclease G, mitochondrial OS=Caenorhabditis elegans GN=cps-6 PE=1 SV=1 17 311 7.0E-54
sp|Q14249|NUCG_HUMAN Endonuclease G, mitochondrial OS=Homo sapiens GN=ENDOG PE=1 SV=4 77 314 3.0E-49
sp|O08600|NUCG_MOUSE Endonuclease G, mitochondrial OS=Mus musculus GN=Endog PE=1 SV=1 77 314 3.0E-49
sp|P38447|NUCG_BOVIN Endonuclease G, mitochondrial OS=Bos taurus GN=ENDOG PE=1 SV=1 77 314 4.0E-48
sp|Q502K1|EXOG_DANRE Nuclease EXOG, mitochondrial OS=Danio rerio GN=exog PE=2 SV=2 77 334 3.0E-45
sp|Q0IH72|EXOG_XENLA Nuclease EXOG, mitochondrial OS=Xenopus laevis GN=exog PE=2 SV=1 78 330 1.0E-44
sp|Q9Y2C4|EXOG_HUMAN Nuclease EXOG, mitochondrial OS=Homo sapiens GN=EXOG PE=1 SV=2 93 349 6.0E-44
sp|Q8C163|EXOG_MOUSE Nuclease EXOG, mitochondrial OS=Mus musculus GN=Exog PE=1 SV=1 93 330 2.0E-42
sp|P38446|NUCA_NOSS1 Nuclease OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=nucA PE=1 SV=1 87 312 3.0E-15
sp|P13717|NUCA_SERMA Nuclease OS=Serratia marcescens GN=nucA PE=1 SV=2 88 311 1.0E-06
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GO

GO Term Description Terminal node
GO:0016787 hydrolase activity Yes
GO:0046872 metal ion binding Yes
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0003824 catalytic activity No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.5

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|059440
MQRMPGSAIVHAAVFTAGALLGGGIAVAVTSKKNQQHPVLPTRAAPVPTTSGLQQEQQVSVQPRFVGTDVIPASA
LRYGNPGPIADFIQRQAYVAAYDRRLRHPAWTAEHLTLASLGKSRVTPPEENSGGDRSNSAFKEDDSLPVVFRSK
LSDYFRSGYDRGHMVPAADAKMSQEAMNETFYMSNIAPQVGDGFNRHYWAYLEDWCRRLTGTFQDVYVFTVPLYL
PKKDVDGKWRVTHEVIGNPPNVSVPTHFAKVVLASKPSSPLTPDQLEVSTGAFVLPNSVIADDAPLTSFVVPVDA
VERAAGLTLFSDQIKLGSKHICQTTKCEVIVRRFDDARKNVKRITGPKS*
Coding >Agabi119p4|059440
ATGCAAAGAATGCCTGGATCTGCCATCGTGCATGCTGCTGTATTCACCGCGGGCGCTTTGCTTGGGGGAGGGATA
GCCGTTGCCGTCACGAGCAAGAAAAATCAACAGCATCCTGTTCTTCCTACGAGAGCTGCGCCTGTACCGACGACT
TCTGGATTACAGCAGGAACAACAAGTTAGTGTACAGCCGAGGTTTGTGGGTACGGATGTTATTCCGGCTTCTGCT
TTGAGGTATGGGAATCCTGGGCCCATAGCGGATTTTATACAGAGACAGGCGTATGTGGCTGCTTATGATCGAAGA
CTGAGGCATCCAGCTTGGACCGCTGAACACCTTACACTTGCATCGTTGGGCAAGTCGCGTGTAACACCACCAGAG
GAAAACAGTGGCGGTGATAGATCCAACTCGGCATTCAAAGAAGATGACTCGTTGCCTGTCGTATTTCGTTCAAAA
CTGTCAGACTACTTTAGAAGTGGGTATGACCGGGGACATATGGTGCCAGCTGCGGATGCGAAGATGTCGCAGGAG
GCCATGAATGAGACTTTTTATATGTCCAATATCGCACCACAAGTTGGGGATGGGTTTAACAGACATTATTGGGCC
TATCTAGAAGATTGGTGTCGTCGCCTTACTGGGACCTTCCAAGACGTCTATGTCTTTACCGTACCTCTCTATCTT
CCCAAGAAGGATGTAGATGGTAAATGGCGTGTGACTCATGAAGTTATCGGGAATCCACCCAATGTTTCTGTACCA
ACACATTTTGCAAAGGTAGTGCTGGCGTCGAAACCCTCTTCGCCTTTAACTCCCGATCAACTGGAAGTCTCTACG
GGAGCGTTTGTCCTCCCAAACTCGGTGATTGCAGATGATGCGCCGTTGACAAGTTTTGTTGTACCCGTGGATGCT
GTTGAACGCGCTGCTGGCTTGACCCTTTTCTCTGATCAAATCAAATTGGGTTCCAAGCACATTTGCCAGACGACA
AAATGTGAAGTTATCGTGAGGAGATTCGACGACGCGCGGAAGAACGTCAAGAGGATCACTGGACCCAAATCATAG
Transcript >Agabi119p4|059440
ATGCAAAGAATGCCTGGATCTGCCATCGTGCATGCTGCTGTATTCACCGCGGGCGCTTTGCTTGGGGGAGGGATA
GCCGTTGCCGTCACGAGCAAGAAAAATCAACAGCATCCTGTTCTTCCTACGAGAGCTGCGCCTGTACCGACGACT
TCTGGATTACAGCAGGAACAACAAGTTAGTGTACAGCCGAGGTTTGTGGGTACGGATGTTATTCCGGCTTCTGCT
TTGAGGTATGGGAATCCTGGGCCCATAGCGGATTTTATACAGAGACAGGCGTATGTGGCTGCTTATGATCGAAGA
CTGAGGCATCCAGCTTGGACCGCTGAACACCTTACACTTGCATCGTTGGGCAAGTCGCGTGTAACACCACCAGAG
GAAAACAGTGGCGGTGATAGATCCAACTCGGCATTCAAAGAAGATGACTCGTTGCCTGTCGTATTTCGTTCAAAA
CTGTCAGACTACTTTAGAAGTGGGTATGACCGGGGACATATGGTGCCAGCTGCGGATGCGAAGATGTCGCAGGAG
GCCATGAATGAGACTTTTTATATGTCCAATATCGCACCACAAGTTGGGGATGGGTTTAACAGACATTATTGGGCC
TATCTAGAAGATTGGTGTCGTCGCCTTACTGGGACCTTCCAAGACGTCTATGTCTTTACCGTACCTCTCTATCTT
CCCAAGAAGGATGTAGATGGTAAATGGCGTGTGACTCATGAAGTTATCGGGAATCCACCCAATGTTTCTGTACCA
ACACATTTTGCAAAGGTAGTGCTGGCGTCGAAACCCTCTTCGCCTTTAACTCCCGATCAACTGGAAGTCTCTACG
GGAGCGTTTGTCCTCCCAAACTCGGTGATTGCAGATGATGCGCCGTTGACAAGTTTTGTTGTACCCGTGGATGCT
GTTGAACGCGCTGCTGGCTTGACCCTTTTCTCTGATCAAATCAAATTGGGTTCCAAGCACATTTGCCAGACGACA
AAATGTGAAGTTATCGTGAGGAGATTCGACGACGCGCGGAAGAACGTCAAGAGGATCACTGGACCCAAATCATAG
Gene >Agabi119p4|059440
ATGCAAAGAATGCCTGGATCTGCCATCGTGCATGCTGCTGTATTCACCGCGGGCGCTTTGCTTGGGGGAGGGATA
GCCGTTGCCGTCACGAGCAAGAAAAATCAACAGCATCCTGTTCTTCCTACGAGAGCTGCGCCTGTACCGACGACT
TCTGGATTACAGCAGGAACAACAAGTTAGTGTACAGCCGAGGTTTGTGGGTACGGATGTTATTCCGGCTTCTGCT
TTGAGGTATGGGAATCCTGGTGAGTGGTATCGATTTCTTCATGTGTGGTTGATATTGGGTGTTGAAGGTGTGGGG
TGTTTTATAGGGCCCATAGCGGATTTTATACAGAGACAGGCGTATGTGGCTGCTTATGATCGAAGACTGAGGCAT
CCAGCTTGGGTTTGTTTCTCTATCTGGAACACCACACGCGAACAATTTATTGATCATTGGTTCTCGTTAGACCGC
TGAACACCTTACACTTGCATCGTTGGGCAAGTCGCGTGTAACACCACCAGAGGAAAACAGTGGCGGTGATAGATC
CAACTCGGCATTCAAAGAAGATGACTCGTTGCCTGTCGTATTTCGTTCAAAACTGTCAGACTACTTTAGAAGTGG
GTATGACCGGGGACATATGTAAGTTGTTTCTCTTGTTTTTGTAGATGATCGTTTTGGGTTTAAAGATGTGTTCTT
TACATAGGGTGCCAGCTGCGGATGCGAAGATGTCGCAGGTATTGTTTTCATGTGTGGCCTTGAGGGATGCAACTA
TCGCTTACAGCAGATGTAGGAGGCCATGAATGAGACTTTTTATATGTCCAATATCGCACCACAAGTTGGGGATGG
GTTTAACAGACATTGTACGGTCTTTTCTTCTTCTTTTGTTATCAATCCCTCTGAAATTCTCTCATATAGATTGGG
CCTATCTAGAAGATTGGTGTCGTCGCCTTACTGGGACCTTCCAAGACGTCTATGTCTTTACCGTACCTCTCTATC
TTCCCAAGAAGGATGTAGATGGTAAATGGCGTGTGGTATGTTTGCTCATTTCTTGTTTTTTTTATGGGCGTTGAC
GAATGCGCGAAAAGACTCATGAAGTTATCGGGAATCCACCCAATGTTTCTGTACCAACACATTTTGCAAAGGTAG
TGCTGGCGTCGAAACCCTCTTCGCCTTTAACTCCCGATCAACTGGAAGTCTCTACGGGAGCGTTTGTCCTCCCAA
ACTCGGTGATTGCAGATGATGCGCCGTTGACAAGTTTTGTTGTACCCGGTAAAGTTATAAAAAATTTTAATATGA
TTTTATTACTGAAGAATTGGATAGTGGATGCTGTTGAACGCGCTGCTGGCTTGACCCTTTTCTCTGATCAAATCA
AATTGGGTTCCAAGCACATTTGCCAGACGACAAAATGTGAAGTTATCGTGAGGAGATTCGACGACGCGCGGAAGA
ACGTCAAGAGGATCACTGGACCCAAATCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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