© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|059190 |
| Gene name | |
| Location | scaffold_03a:1618778..1619639 |
| Strand | + |
| Gene length (bp) | 861 |
| Transcript length (bp) | 657 |
| Coding sequence length (bp) | 657 |
| Protein length (aa) | 219 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00335 | Tetraspanin | Tetraspanin family | 8.2E-10 | 6 | 194 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 26 | 19 |
| 2 | 41 | 63 | 22 |
| 3 | 76 | 98 | 22 |
| 4 | 174 | 196 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|059190 MGVWAALNFLLLVAGAVTLALSIVWRGPNLLMNMVLSDADLTAGIILAIAFIITCITGIVGVIQRNHITIGLVIT NYALLVDAIGIVIIGTFVWFFTLKERHNYSVLWDAATPDVRRALQDQLKCCGYFNNTDFAEISTFCKDQQFISSL NQTDLNNSCVTPITDFADMTLNNIFTTVYGYMAIVLCLLLATLCVIKKRHEDERFNKIDAKRGGKGFV* |
| Coding | >Agabi119p4|059190 ATGGGCGTCTGGGCTGCCCTGAACTTTTTGTTGCTTGTTGCAGGCGCAGTCACTCTCGCGCTCTCGATTGTATGG CGTGGACCTAATCTCCTCATGAATATGGTCTTATCTGATGCGGACCTTACTGCTGGTATCATACTGGCGATCGCC TTCATCATAACCTGTATCACAGGCATTGTTGGTGTCATACAGCGAAACCACATCACTATCGGCCTTGTCATCACT AACTACGCGCTCCTGGTGGATGCTATTGGCATTGTTATTATTGGGACTTTTGTCTGGTTTTTCACTCTGAAGGAA CGGCACAATTATTCGGTATTGTGGGATGCGGCCACTCCAGACGTTCGTCGGGCCCTTCAGGATCAGCTGAAGTGT TGCGGATACTTCAATAACACCGACTTCGCAGAAATCAGTACTTTTTGCAAGGATCAGCAATTCATCAGCAGCCTT AATCAAACCGATTTGAACAATTCTTGTGTCACTCCGATTACTGATTTCGCTGACATGACTCTGAACAATATTTTT ACAACCGTTTATGGCTACATGGCAATCGTTCTTTGCCTTTTGCTCGCCACCCTATGCGTGATCAAGAAGAGGCAT GAAGATGAGCGATTCAACAAAATTGACGCGAAGCGGGGAGGCAAAGGTTTTGTGTAA |
| Transcript | >Agabi119p4|059190 ATGGGCGTCTGGGCTGCCCTGAACTTTTTGTTGCTTGTTGCAGGCGCAGTCACTCTCGCGCTCTCGATTGTATGG CGTGGACCTAATCTCCTCATGAATATGGTCTTATCTGATGCGGACCTTACTGCTGGTATCATACTGGCGATCGCC TTCATCATAACCTGTATCACAGGCATTGTTGGTGTCATACAGCGAAACCACATCACTATCGGCCTTGTCATCACT AACTACGCGCTCCTGGTGGATGCTATTGGCATTGTTATTATTGGGACTTTTGTCTGGTTTTTCACTCTGAAGGAA CGGCACAATTATTCGGTATTGTGGGATGCGGCCACTCCAGACGTTCGTCGGGCCCTTCAGGATCAGCTGAAGTGT TGCGGATACTTCAATAACACCGACTTCGCAGAAATCAGTACTTTTTGCAAGGATCAGCAATTCATCAGCAGCCTT AATCAAACCGATTTGAACAATTCTTGTGTCACTCCGATTACTGATTTCGCTGACATGACTCTGAACAATATTTTT ACAACCGTTTATGGCTACATGGCAATCGTTCTTTGCCTTTTGCTCGCCACCCTATGCGTGATCAAGAAGAGGCAT GAAGATGAGCGATTCAACAAAATTGACGCGAAGCGGGGAGGCAAAGGTTTTGTGTAA |
| Gene | >Agabi119p4|059190 ATGGGCGTCTGGGCTGCCCTGAACTTTTTGTTGCTTGTTGCAGGCGCAGTCACTCTCGCGCTCTCGATTGTATGG CGTGGACCTAATCTCCTCATGAATATGGTCTTATCTGATGCGGACCTTACTGGTAAGCCCTCCGTCTGTGTTTCC CTTCGGTCTCTGTTCTGAAAATCTACAGCTGGTATCATACTGGCGATCGCCTTCATCATAACCTGTATCACAGGC ATTGTTGGTGTCATACAGCGAAACCACATCACTATCGGCCTTGTCATCACTAACTACGCGCTCCTGGTGGATGCT ATTGGCATTGTTATTATTGGGACTTTTGTCTGGTTTTTCACTCTGAAGGAACGGCACAATTATTCGGTATTGTGG GATGCGGCCACTCCAGACGTTCGTCGGGCCCTTCAGGATCAGGTATGCTTCGCTGTCACTTCAATGAAGTCACCA CTTAGTGTTATGTAGCTGAAGTGTTGCGGATACTTCAATAACACCGACTTCGCAGAAATCAGTACTTTTTGCAAG GATCAGCAATTCATCAGCAGCCTTAATCAAACCGATTTGAACAATTCTTGTGTCACTCCGATTACTGATTTCGCT GACATGACTCTGAACAATATTTTTACGTGCGCATGCTCAAAACTCAATTTTGACCTTAATGATTCACGTCTCGTA GAACCGTTTATGGCTACATGGCAATCGTTCTTTGCCTTTTGCTCGCCACCCTATGCGTGATCAAGAAGGCAAGTA CAATCTAATGAGGTTCTTGTACTCAGTCAAACCTTATGATGATAACAGAGGCATGAAGATGAGCGATTCAACAAA ATTGACGCGAAGCGGGGAGGCAAAGGTTTTGTGTAA |