Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|058630
Gene name
Locationscaffold_03a:1488351..1489769
Strand-
Gene length (bp)1418
Transcript length (bp)1032
Coding sequence length (bp)1032
Protein length (aa) 344

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04968 CHORD CHORD 1.8E-21 3 61
PF04968 CHORD CHORD 1.8E-23 133 199
PF04969 CS CS domain 1.8E-10 217 294

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7T3F7|CHRD1_DANRE Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio GN=chordc1 PE=2 SV=1 4 304 5.0E-42
sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1 4 304 7.0E-40
sp|Q5ZML4|CHRD1_CHICK Cysteine and histidine-rich domain-containing protein 1 OS=Gallus gallus GN=CHORDC1 PE=2 SV=1 4 314 1.0E-39
sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1 16 304 4.0E-39
sp|A9YUB1|CHRD1_PIG Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa GN=CHORDC1 PE=2 SV=1 4 304 4.0E-39
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Swissprot ID Swissprot Description Start End E-value
sp|Q7T3F7|CHRD1_DANRE Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio GN=chordc1 PE=2 SV=1 4 304 5.0E-42
sp|Q6NUA0|CHRD1_XENLA Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1 4 304 7.0E-40
sp|Q5ZML4|CHRD1_CHICK Cysteine and histidine-rich domain-containing protein 1 OS=Gallus gallus GN=CHORDC1 PE=2 SV=1 4 314 1.0E-39
sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1 16 304 4.0E-39
sp|A9YUB1|CHRD1_PIG Cysteine and histidine-rich domain-containing protein 1 OS=Sus scrofa GN=CHORDC1 PE=2 SV=1 4 304 4.0E-39
sp|Q9D1P4|CHRD1_MOUSE Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1 4 304 5.0E-39
sp|Q29RL2|CHRD1_BOVIN Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1 4 304 5.0E-39
sp|D4A4T9|CHRD1_RAT Cysteine and histidine-rich domain-containing protein 1 OS=Rattus norvegicus GN=Chordc1 PE=3 SV=1 4 304 1.0E-38
sp|Q9UHD1|CHRD1_HUMAN Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2 4 304 2.0E-38
sp|Q9VCC0|CHRD1_DROME Cysteine and histidine-rich domain-containing protein OS=Drosophila melanogaster GN=CHORD PE=1 SV=1 1 310 6.0E-38
sp|Q5RD91|CHRD1_PONAB Cysteine and histidine-rich domain-containing protein 1 OS=Pongo abelii GN=CHORDC1 PE=2 SV=1 4 304 2.0E-37
sp|Q9UKP3|ITBP2_HUMAN Integrin beta-1-binding protein 2 OS=Homo sapiens GN=ITGB1BP2 PE=1 SV=1 4 307 1.0E-31
sp|Q462R2|ITBP2_PIG Integrin beta-1-binding protein 2 OS=Sus scrofa GN=ITGB1BP2 PE=2 SV=1 4 307 4.0E-31
sp|Q9R000|ITBP2_MOUSE Integrin beta-1-binding protein 2 OS=Mus musculus GN=Itgb1bp2 PE=1 SV=1 4 311 4.0E-31
sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2 3 199 2.0E-26
sp|Q9SE33|RAR1_ARATH Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1 3 199 4.0E-25
sp|Q4R7U2|CHRD1_MACFA Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1 134 199 1.0E-09
sp|Q6EPW7|RAR1_ORYSJ Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2 134 200 1.0E-09
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 50 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|058630
MPRCSRGGCNADYVDGSTDTCTHHPGGPVFHEGLKSWSCCSDVSKPVLSFDEFLSIPGCAKVTGHTSEAPKASEP
KPAPSATFSVVESSNKDGKETFMTTPAQKSLSTADKKAPPAWVIEEDDPTVPISPGTPCKRKGCGVPFVSDEESR
QGDGPGTICVYHPAPPIFREGSKGYLCCKRRVLEFDEFLKIRGCKTGRHVFAVKATALSAADEMVDCRIDHYQTR
DKVFVSVFAKQADKEQSVIRFDSAEQVVLDLHLPGSKRFSRVLNLAGPIDTAHSTYHFFNTKIELQLKKADNRGW
VLLEKSDRNLEGLNYTFGVGGRSGTVGGKEMYLDAVNKAVIPQ*
Coding >Agabi119p4|058630
ATGCCTCGTTGTTCTCGCGGAGGATGCAATGCCGACTATGTTGACGGCTCAACCGATACATGCACCCATCATCCT
GGTGGACCTGTTTTCCACGAAGGCCTGAAATCTTGGTCATGCTGTTCGGATGTCAGTAAACCGGTTCTGTCCTTC
GATGAGTTCCTCTCAATTCCCGGATGTGCAAAGGTCACTGGCCATACTTCTGAAGCCCCCAAAGCTTCTGAACCA
AAGCCCGCCCCTTCTGCTACATTCTCCGTGGTTGAGTCATCCAACAAAGATGGAAAAGAGACGTTCATGACTACT
CCGGCTCAAAAGAGTTTATCGACAGCTGATAAAAAAGCCCCCCCGGCCTGGGTCATTGAGGAAGACGACCCTACT
GTTCCGATCTCACCTGGGACCCCATGCAAGAGGAAAGGCTGTGGTGTTCCTTTTGTCAGCGACGAAGAGAGCAGA
CAAGGTGACGGCCCGGGGACAATCTGTGTCTATCATCCAGCACCGCCAATCTTTCGAGAAGGCAGCAAGGGATAC
CTTTGCTGCAAACGCCGAGTCTTGGAATTCGATGAGTTCCTGAAGATTCGAGGCTGCAAGACTGGGCGTCACGTT
TTCGCCGTTAAGGCGACAGCACTGTCCGCTGCGGACGAAATGGTTGACTGCCGTATAGATCATTACCAGACTCGG
GACAAGGTTTTCGTTTCTGTGTTTGCCAAACAAGCCGATAAAGAACAGAGTGTCATACGATTCGATTCAGCAGAG
CAGGTTGTACTTGATCTTCACCTGCCAGGGTCCAAACGGTTTTCGCGTGTGTTGAATCTCGCTGGACCGATTGAT
ACAGCCCATAGCACTTACCACTTTTTCAACACAAAAATTGAGTTACAACTAAAGAAAGCAGATAATCGTGGCTGG
GTATTGCTGGAAAAATCAGATCGTAACCTTGAGGGCTTAAACTATACGTTTGGCGTTGGTGGTCGGTCTGGAACT
GTCGGCGGAAAGGAAATGTACCTTGATGCAGTTAACAAGGCTGTCATACCACAATGA
Transcript >Agabi119p4|058630
ATGCCTCGTTGTTCTCGCGGAGGATGCAATGCCGACTATGTTGACGGCTCAACCGATACATGCACCCATCATCCT
GGTGGACCTGTTTTCCACGAAGGCCTGAAATCTTGGTCATGCTGTTCGGATGTCAGTAAACCGGTTCTGTCCTTC
GATGAGTTCCTCTCAATTCCCGGATGTGCAAAGGTCACTGGCCATACTTCTGAAGCCCCCAAAGCTTCTGAACCA
AAGCCCGCCCCTTCTGCTACATTCTCCGTGGTTGAGTCATCCAACAAAGATGGAAAAGAGACGTTCATGACTACT
CCGGCTCAAAAGAGTTTATCGACAGCTGATAAAAAAGCCCCCCCGGCCTGGGTCATTGAGGAAGACGACCCTACT
GTTCCGATCTCACCTGGGACCCCATGCAAGAGGAAAGGCTGTGGTGTTCCTTTTGTCAGCGACGAAGAGAGCAGA
CAAGGTGACGGCCCGGGGACAATCTGTGTCTATCATCCAGCACCGCCAATCTTTCGAGAAGGCAGCAAGGGATAC
CTTTGCTGCAAACGCCGAGTCTTGGAATTCGATGAGTTCCTGAAGATTCGAGGCTGCAAGACTGGGCGTCACGTT
TTCGCCGTTAAGGCGACAGCACTGTCCGCTGCGGACGAAATGGTTGACTGCCGTATAGATCATTACCAGACTCGG
GACAAGGTTTTCGTTTCTGTGTTTGCCAAACAAGCCGATAAAGAACAGAGTGTCATACGATTCGATTCAGCAGAG
CAGGTTGTACTTGATCTTCACCTGCCAGGGTCCAAACGGTTTTCGCGTGTGTTGAATCTCGCTGGACCGATTGAT
ACAGCCCATAGCACTTACCACTTTTTCAACACAAAAATTGAGTTACAACTAAAGAAAGCAGATAATCGTGGCTGG
GTATTGCTGGAAAAATCAGATCGTAACCTTGAGGGCTTAAACTATACGTTTGGCGTTGGTGGTCGGTCTGGAACT
GTCGGCGGAAAGGAAATGTACCTTGATGCAGTTAACAAGGCTGTCATACCACAATGA
Gene >Agabi119p4|058630
ATGCCTCGTTGTTCTCGCGGAGGATGCAATGCCGACTATGTTGACGGCTCAACCGATACATGCACCCATCATCCT
GGTGGACCTGTGGGTCGTTTCCCTCGAAATTTCCCGTTTTGTTTTTCCAGAGGCTGACAACAATTTGAAAACAAA
AAGGTTTTCCACGAAGGCCTGAAATCTTGGTCATGCTGTTCGGATGTCAGTAAACCGGTTCTGTCCTTCGATGAG
TTCCTCTCAATTCCCGTGAGATCCATTCCGTCAAGTTCGTCATACGTTTGAGAGTGACACTAGTTGGATGTAGGG
ATGTGCAAAGGTCACTGGCCATACTTCTGAAGCCCCCAAAGCTTCTGAACCAAAGCCCGCCCCTTCTGCTACATT
CTCCGTGGTTGAGTCATCCAACAAAGATGGAAAAGAGACGTTCATGACTACTCCGGCTCAAAAGAGTTTATCGAC
AGCTGATAAAAAAGCCCCCCCGGCCTGGGTCATTGAGGAAGACGACCCTACTGTTCCGATCTCACCTGGGACCCC
ATGCAAGAGGAAAGGCTGTGGTGTTCCTTTTGTCAGCGACGAAGAGAGCAGACAAGGTGACGGCCCGGGGACAAT
CTGTGTCTATCATCCAGCACCGGTAAGTTAAGATATTTCCGGAGTTTCGAAACTCATACTAGGTGGAATTGATTT
AGCCAATCTTTCGAGAAGGCAGCAAGGTAGCCATTTATGATCATCGTGCAAATACAGGTCTGCTCAGCTGTTTGA
TATCTAGGGATACCTTTGCTGCAAACGCCGAGTCTTGGAATTCGATGAGTTCCTGAAGATTCGAGGCTGCAAGAC
TGGGCGTCACGTTTTCGCCGTTAAGGCGACAGCACTGTCCGCTGTAAGTTTAGGATACATTGAACCATGTGTAAT
GCTTACTTCGGCCGCCAGGCGGACGAAATGGTTGACTGCCGTATAGATCATTACCAGACTCGGGACAAGGTTTTC
GTTTCTGTGTTTGCCAAACAAGCCGATAAAGAACAGAGTGTCATACGATTCGATTCAGCAGAGCAGGTGCGTTCA
ACGTTAACAGGTCGATCCAGACACCTCCATCCTCTTTCCAGGTTGTACTTGATCTTCACCTGCCAGGGTCCAAAC
GGTTTTCGCGTGTGTTGAATCTCGCTGGACCGATTGATACAGCCCATAGCACTTACCACTTTTTCAACACAAAAG
TGATTTTTCCCTTTAGTCATTGCCATCTCCGAATTAATGTGTTCTAGATTGAGTTACAACTAAAGAAAGCAGATA
ATCGTGGCTGGGTATTGCTGGAAAAATCAGATCGTAACCTTGAGGGCTTAAACTATACGTTTGGCGTTGGTGGTC
GGTCTGGAACTGTCGGCGGAAAGGAAATGTACCTTGATGCAGTTAACAAGGCTGTCATACCACAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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