Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|056220
Gene name
Locationscaffold_03a:896615..899282
Strand+
Gene length (bp)2667
Transcript length (bp)2022
Coding sequence length (bp)2022
Protein length (aa) 674

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04677 CwfJ_C_1 Protein similar to CwfJ C-terminus 1 1.9E-28 440 573
PF13696 zf-CCHC_2 Zinc knuckle 3.7E-10 370 389
PF04676 CwfJ_C_2 Protein similar to CwfJ C-terminus 2 3.2E-11 603 670
PF00098 zf-CCHC Zinc knuckle 4.2E-03 375 390

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1 7 672 9.0E-57
sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1 7 671 5.0E-56
sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1 442 670 1.0E-44
sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1 429 673 4.0E-38
sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1 448 673 1.0E-36
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Swissprot ID Swissprot Description Start End E-value
sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1 7 672 9.0E-57
sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1 7 671 5.0E-56
sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1 442 670 1.0E-44
sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1 429 673 4.0E-38
sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1 448 673 1.0E-36
sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2 448 673 3.0E-36
sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=1 SV=2 448 673 6.0E-36
sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1 430 673 7.0E-33
sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2 PE=3 SV=2 435 670 4.0E-25
sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741 PE=2 SV=1 428 670 9.0E-25
sp|P53255|DRN1_YEAST CWF19-like protein DRN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DRN1 PE=1 SV=1 430 673 3.0E-24
sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1 1 352 3.0E-24
sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2 PE=3 SV=2 1 285 4.0E-22
sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1 1 311 1.0E-18
sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741 PE=2 SV=1 1 300 1.0E-17
sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1 8 302 1.0E-17
sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1 1 346 2.0E-16
sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=1 SV=2 1 345 2.0E-15
sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2 1 346 8.0E-15
sp|Q2TBE0|C19L2_HUMAN CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=4 436 670 5.0E-12
sp|Q28C44|C19L2_XENTR CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1 446 670 5.0E-12
sp|Q8BG79|C19L2_MOUSE CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=1 SV=1 414 670 4.0E-11
sp|Q3LSS0|C19L2_DANRE CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1 416 670 2.0E-09
sp|P53255|DRN1_YEAST CWF19-like protein DRN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DRN1 PE=1 SV=1 5 335 2.0E-07
sp|Q10946|C19L2_CAEEL CWF19-like protein 2 homolog OS=Caenorhabditis elegans GN=B0361.2/B0361.1 PE=3 SV=2 446 670 8.0E-07
sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1 347 437 2.0E-06
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GO

GO Term Description Terminal node
GO:0008270 zinc ion binding Yes
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0043169 cation binding No
GO:0043167 ion binding No
GO:0046872 metal ion binding No
GO:0005488 binding No
GO:0046914 transition metal ion binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 24 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Zinc finger, CCHC-type

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|056220
MDSNSVKILTLGAAAGSIREILSKIKAIDDKHGKFDFVLCTGDFFGLPDESTESDIDDDEVSLLLDGKLEVPVEC
YIMQGKYPLPPKVIQKFSKTGGELCSNMFLMGKSGTITTANGIRIACLGGVYDARIYSSVDAAPGFVSPYFSTHT
KERLLANCFSTVSTTQSYNSLASIQSNLPPSQLVDILLSNVWPSRIAHSSACPVPQNELFPIIAPPLDEIVRRIR
PRYHITTGGGSPPFFWEREPFVWDEEEGRVMRFISLGAFGGGTLSSGKKQRWFYAFSISPKPTSSPLLPSNVTSN
PFTEPTNRGFKRSFETSEGTNFIFGDVRQPVKRNRIVQGDPGKPPPGYKCRRCESIDHFIIDCPERSKPPEGYIC
KLCTEPGHFVRDCPSRDAVGDTGGRKPKPGYVCRACGSEEHYLDDCLTNRSAQKGDRRPGHRGPAREIAPDECWF
CLSNPNLAKHLIVSIGSEVYVTLPKGQIVPTQSTSDPMSIPGGGHVLIVPITHYPTYTTIPPELAPPIMEETEKY
KSALRAFFSKHGCSFVMFEVGRLSAKGGHAHVQVVPIPRALEDRVEDEFIREGRAVGIDFERDAEEAMNLCAGGK
GGYFKVELPDGRKMVHLIREHVPFNLQFGRQVLVTLLGVPDRFDWKACTLSDDEDRKNAQAFKTAFAPFDPSL*
Coding >Agabi119p4|056220
ATGGACTCAAACTCAGTCAAAATACTTACCCTAGGCGCTGCAGCAGGTTCCATACGCGAAATCCTATCAAAAATA
AAAGCAATTGACGACAAGCATGGCAAATTTGACTTTGTGCTGTGTACCGGCGATTTTTTCGGGTTACCAGATGAA
TCAACCGAGTCAGATATCGACGACGATGAGGTCTCTCTTTTGCTTGATGGAAAATTGGAGGTGCCTGTAGAGTGC
TATATCATGCAGGGCAAGTATCCACTGCCACCCAAAGTCATACAGAAGTTTTCTAAGACTGGAGGGGAACTTTGC
AGTAACATGTTTCTGATGGGCAAATCTGGAACAATCACTACAGCCAATGGCATACGAATCGCGTGTCTTGGAGGC
GTGTATGATGCAAGAATCTACAGTTCAGTTGACGCTGCTCCAGGTTTTGTCTCCCCCTACTTCTCTACTCACACG
AAAGAACGTTTGCTTGCAAATTGTTTTTCAACTGTTTCAACAACTCAAAGTTACAACTCCCTTGCGTCCATCCAG
TCAAACTTGCCGCCTTCACAATTGGTTGATATTCTGCTGAGCAATGTGTGGCCTTCCCGCATCGCACATTCATCA
GCATGTCCAGTTCCTCAAAATGAACTCTTCCCAATCATCGCCCCACCTCTCGACGAGATTGTACGGCGTATACGA
CCGCGATATCACATCACCACAGGCGGAGGGTCGCCTCCCTTTTTCTGGGAGCGTGAGCCCTTCGTTTGGGATGAA
GAGGAAGGTCGCGTGATGCGGTTCATCTCTCTAGGCGCCTTTGGTGGTGGGACACTATCGTCAGGCAAGAAACAG
AGATGGTTTTATGCTTTCAGCATCTCTCCGAAACCGACTTCAAGTCCTCTTCTACCTTCCAATGTGACCAGTAAT
CCATTTACCGAACCCACCAATAGGGGATTTAAACGTTCATTCGAAACGTCTGAGGGCACTAACTTCATTTTTGGC
GACGTCCGTCAGCCGGTGAAAAGGAATAGAATTGTGCAAGGAGATCCTGGGAAACCGCCCCCTGGTTACAAATGT
CGTCGTTGTGAATCAATAGATCATTTTATTATCGATTGTCCGGAACGCTCAAAACCTCCTGAAGGTTATATTTGC
AAGCTCTGTACAGAGCCTGGTCATTTCGTTCGCGACTGTCCCTCGAGGGATGCCGTCGGAGATACAGGTGGTCGT
AAACCCAAACCCGGATATGTTTGTCGCGCATGTGGCAGTGAAGAACACTATCTTGACGATTGTTTGACCAACCGA
TCAGCACAAAAGGGTGACAGACGACCTGGTCATAGAGGTCCGGCCAGAGAGATTGCTCCTGATGAATGTTGGTTT
TGTTTATCAAATCCTAACCTCGCAAAACATCTCATCGTTTCGATTGGATCCGAGGTCTATGTGACTCTGCCCAAA
GGTCAAATAGTTCCCACTCAGTCGACGTCTGATCCTATGAGCATTCCCGGTGGTGGCCACGTTCTGATCGTTCCC
ATCACGCACTATCCGACTTACACGACAATTCCTCCCGAATTAGCTCCTCCGATAATGGAAGAAACTGAAAAATAC
AAGTCAGCACTGAGAGCATTTTTCAGCAAGCATGGCTGTAGTTTTGTGATGTTCGAGGTTGGGCGACTGAGCGCC
AAAGGGGGCCATGCCCATGTACAAGTTGTGCCTATACCCCGAGCACTTGAAGACCGAGTAGAGGACGAATTTATC
CGTGAGGGTCGGGCTGTGGGAATAGATTTTGAACGAGACGCTGAGGAGGCCATGAATCTCTGTGCTGGTGGTAAA
GGTGGCTACTTTAAGGTTGAATTGCCCGATGGCAGGAAAATGGTCCACCTCATCAGGGAGCACGTTCCTTTCAAT
CTACAATTTGGACGGCAAGTACTTGTTACACTCTTGGGTGTACCAGATAGATTTGATTGGAAGGCGTGCACATTA
TCCGATGACGAGGATCGCAAAAATGCGCAGGCTTTCAAGACAGCTTTTGCTCCATTTGACCCGAGTTTATAA
Transcript >Agabi119p4|056220
ATGGACTCAAACTCAGTCAAAATACTTACCCTAGGCGCTGCAGCAGGTTCCATACGCGAAATCCTATCAAAAATA
AAAGCAATTGACGACAAGCATGGCAAATTTGACTTTGTGCTGTGTACCGGCGATTTTTTCGGGTTACCAGATGAA
TCAACCGAGTCAGATATCGACGACGATGAGGTCTCTCTTTTGCTTGATGGAAAATTGGAGGTGCCTGTAGAGTGC
TATATCATGCAGGGCAAGTATCCACTGCCACCCAAAGTCATACAGAAGTTTTCTAAGACTGGAGGGGAACTTTGC
AGTAACATGTTTCTGATGGGCAAATCTGGAACAATCACTACAGCCAATGGCATACGAATCGCGTGTCTTGGAGGC
GTGTATGATGCAAGAATCTACAGTTCAGTTGACGCTGCTCCAGGTTTTGTCTCCCCCTACTTCTCTACTCACACG
AAAGAACGTTTGCTTGCAAATTGTTTTTCAACTGTTTCAACAACTCAAAGTTACAACTCCCTTGCGTCCATCCAG
TCAAACTTGCCGCCTTCACAATTGGTTGATATTCTGCTGAGCAATGTGTGGCCTTCCCGCATCGCACATTCATCA
GCATGTCCAGTTCCTCAAAATGAACTCTTCCCAATCATCGCCCCACCTCTCGACGAGATTGTACGGCGTATACGA
CCGCGATATCACATCACCACAGGCGGAGGGTCGCCTCCCTTTTTCTGGGAGCGTGAGCCCTTCGTTTGGGATGAA
GAGGAAGGTCGCGTGATGCGGTTCATCTCTCTAGGCGCCTTTGGTGGTGGGACACTATCGTCAGGCAAGAAACAG
AGATGGTTTTATGCTTTCAGCATCTCTCCGAAACCGACTTCAAGTCCTCTTCTACCTTCCAATGTGACCAGTAAT
CCATTTACCGAACCCACCAATAGGGGATTTAAACGTTCATTCGAAACGTCTGAGGGCACTAACTTCATTTTTGGC
GACGTCCGTCAGCCGGTGAAAAGGAATAGAATTGTGCAAGGAGATCCTGGGAAACCGCCCCCTGGTTACAAATGT
CGTCGTTGTGAATCAATAGATCATTTTATTATCGATTGTCCGGAACGCTCAAAACCTCCTGAAGGTTATATTTGC
AAGCTCTGTACAGAGCCTGGTCATTTCGTTCGCGACTGTCCCTCGAGGGATGCCGTCGGAGATACAGGTGGTCGT
AAACCCAAACCCGGATATGTTTGTCGCGCATGTGGCAGTGAAGAACACTATCTTGACGATTGTTTGACCAACCGA
TCAGCACAAAAGGGTGACAGACGACCTGGTCATAGAGGTCCGGCCAGAGAGATTGCTCCTGATGAATGTTGGTTT
TGTTTATCAAATCCTAACCTCGCAAAACATCTCATCGTTTCGATTGGATCCGAGGTCTATGTGACTCTGCCCAAA
GGTCAAATAGTTCCCACTCAGTCGACGTCTGATCCTATGAGCATTCCCGGTGGTGGCCACGTTCTGATCGTTCCC
ATCACGCACTATCCGACTTACACGACAATTCCTCCCGAATTAGCTCCTCCGATAATGGAAGAAACTGAAAAATAC
AAGTCAGCACTGAGAGCATTTTTCAGCAAGCATGGCTGTAGTTTTGTGATGTTCGAGGTTGGGCGACTGAGCGCC
AAAGGGGGCCATGCCCATGTACAAGTTGTGCCTATACCCCGAGCACTTGAAGACCGAGTAGAGGACGAATTTATC
CGTGAGGGTCGGGCTGTGGGAATAGATTTTGAACGAGACGCTGAGGAGGCCATGAATCTCTGTGCTGGTGGTAAA
GGTGGCTACTTTAAGGTTGAATTGCCCGATGGCAGGAAAATGGTCCACCTCATCAGGGAGCACGTTCCTTTCAAT
CTACAATTTGGACGGCAAGTACTTGTTACACTCTTGGGTGTACCAGATAGATTTGATTGGAAGGCGTGCACATTA
TCCGATGACGAGGATCGCAAAAATGCGCAGGCTTTCAAGACAGCTTTTGCTCCATTTGACCCGAGTTTATAA
Gene >Agabi119p4|056220
ATGGACTCAAACTCAGTCAAAATGTGAGACCAAACATTTGGATCACTGCGACTAACTAAAGCATGCCAGACTTAC
CCTAGGCGCTGCAGCAGGTTCCATACGCGAAATCCTATCAAAAATAAAAGCAATTGACGACAAGCATGGCAAATT
TGACTTTGTGCTGTGTACCGGCGATTTTTTCGGGTTACCAGATGAATCAACCGAGTCAGATATCGACGACGATGA
GGTCTCTCTTTTGCTTGATGGAAAATTGGAGGGTATGTTGTGAAATCTGTTACATTGGTGCACTCAAAAATTGAC
GAAATCTCAGTGCCTGTAGAGTGCTATATCATGCAGGGCAAGTATCCACTGCCACCCAAAGTCATACAGAAGTTT
TCTAAGACTGGAGGGGAACTTTGCAGTAACATGTTTCTGATGGGTGAGCAAATCTAGCAAATACGCCAGGTGGTT
TCATCCTCATGATTATCCCAGGCAAATCTGGAACAATCACTACAGCCAATGGCATACGAATCGCGTGTCTTGGAG
GCGTGTATGATGCAAGAATCTACAGTTCAGTTGACGCTGCTCCAGTGAGTTGAACATCCGTTTCGTGGTTCAACG
TCATTGACTTCCTGCAGGGTTTTGTCTCCCCCTACTTCTCTACTCACACGAAAGAACGTTTGCTTGCAAATTGTT
TTTCAACTGTTTCAACAACTCAAAGTTACAACTCCCTTGCGTCCATCCAGTCAAACTTGCCGCCTTCACAATTGG
TTGATATTCTGCTGAGCAATGTGTGGCCTTCCCGCATCGCACATTCATCAGCATGTCCAGTTCCTCAAAATGAAC
TCTTCCCAATCATCGCCCCACCTCTCGACGAGATTGTACGGCGTATACGACCGCGATATCACATCACCACAGGCG
GAGGGTCGCCTCCCTTTTTCTGGGAGCGTGAGCCCTTCGTTTGGGATGAAGAGGAAGGTCGCGTGATGCGGTTCA
TCTCTCTAGGCGCCTTTGGTGGTGGGACACTATCGTCAGGCAAGAAACAGAGAGTACGTCTCATCACCGACTACA
TCGTACACCGACATTTCTTTATTTAATATCTTATTTCAGTGGTTTTATGCTTTCAGCATCTCTCCGAAACCGACT
TCAAGTCCTCTTCTACCTTCCAATGTGACCAGTAATCCATTTACCGAACCCACCAATAGGGGATTTAAACGTTCA
TTCGAAACGTCTGAGGGCACTAACTTCATTTTTGGCGACGTCCGTCAGCCGGTGAAAAGGAATAGAATTGGTGAG
ACTTAGATTTTCAATCATTTCAGGTTGTTAATATCTCTCAGTGCAAGGAGATCCTGGGAAACCGCCCCCTGGTTA
CAAATGTCGTCGTTGTGAATCAATAGATGTACCAATATTTTTGCTATGCTTGAACTATCACTGACCTTGATGTCA
GCATTTTATTATCGATTGTCCGGAACGCTCAAAACCTCCTGAAGGTTATATTTGCAAGCTCTGTACAGAGGTACA
TTCAATTTCCCAATGAAAATGGCTAATGTGATCTTACCACTCACATAGCCTGGTCATTTCGTTCGCGACTGTCCC
TCGAGGGATGCCGTCGGAGATACAGGTGGTCGTAAACCCAAACCCGGATATGTTTGTCGCGCATGTGGCAGTGAA
GAACACTATCTTGACGATTGTTTGACCAACCGATCAGCACAAAAGGGTGACAGACGACCTGGTCATAGAGGTCCG
GCCAGAGAGATTGCTCGTGAGTGTTCCGCAGGGTTAGTCAATAGTTATGGTACAAGTTCTAATCAGTTACTTTCT
ACGGCCCTCAGCTGATGAATGTTGGTTTTGTTTATCAAATCCTAACCTCGCGTGAGTCGATTGTCTTGTTTCTCG
ATGGACATATTAAACAAAGTTTAGAAAACATCTCATCGTTTCGATTGGATCCGAGGTCTATGTGACTCTGCCCAA
AGGTCAAATAGTTCCCACTCAGTCGACGTCTGATCCTATGAGCATTCCCGGTGGTGGCCACGTTCTGATCGTTCC
CATCACGCACTATCCGACTTACACGACAATTCCTCCCGAATTAGCTCCTCCGATAATGGAAGAAACTGAAAAGTA
GGTCCATCATAATTTCTTTCGAATTCTATCTCTCATAATTTTTCAGATACAAGTCAGCACTGAGAGCATTTTTCA
GCAAGCATGGCTGTAGTTTTGTGATGTTCGAGGTTGGGCGACTGAGCGCCAAAGGGGGCCATGCCCATGTACAAG
TTGTGCCTATACCCCGAGCACTTGAAGACCGAGTAGAGGACGAATTTATCCGTGAGGGTCGGGCTGTGGGAATAG
ATTTTGAACGAGACGCTGAGGAGGCCATGAATCTCTGTGCTGGTGGTAAAGGTGGCTACTTTAAGGTTGAATTGC
CCGATGGCAGGAAAATGGTCCACCTCATCAGGGAGCACGTTCCTTTCAATCTACAATTTGGACGGTGCGTGGCTG
TACAAAATGTTCCCGAATAATGCCACTGATATTAGATTGCGTGTTTCGTTCGTGACAAGGCAAGTACTTGTTACA
CTCTTGGGTGTACCAGATAGATTTGATTGGAAGGCGTGCACATTATCCGATGACGAGGATCGCAAAAATGCGCAG
GCTTTCAAGACAGCTTTTGCTCCATTTGACCCGAGTTTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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