© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|055630 |
| Gene name | |
| Location | scaffold_03a:774230..775626 |
| Strand | + |
| Gene length (bp) | 1396 |
| Transcript length (bp) | 1038 |
| Coding sequence length (bp) | 1038 |
| Protein length (aa) | 346 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01137 | RTC | RNA 3'-terminal phosphate cyclase | 5.0E-49 | 8 | 315 |
| PF05189 | RTC_insert | RNA 3'-terminal phosphate cyclase (RTC), insert domain | 4.8E-38 | 180 | 279 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09870|RCL1_SCHPO | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.06c PE=3 SV=1 | 2 | 344 | 1.0E-106 |
| sp|Q54S38|RCL1_DICDI | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2 | 5 | 343 | 3.0E-103 |
| sp|Q9Y2P8|RCL1_HUMAN | RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens GN=RCL1 PE=1 SV=3 | 6 | 344 | 4.0E-98 |
| sp|Q2KHX8|RCL1_BOVIN | RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus GN=RCL1 PE=2 SV=1 | 6 | 344 | 1.0E-97 |
| sp|Q9JJT0|RCL1_MOUSE | RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1 | 6 | 344 | 4.0E-97 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09870|RCL1_SCHPO | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.06c PE=3 SV=1 | 2 | 344 | 1.0E-106 |
| sp|Q54S38|RCL1_DICDI | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2 | 5 | 343 | 3.0E-103 |
| sp|Q9Y2P8|RCL1_HUMAN | RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens GN=RCL1 PE=1 SV=3 | 6 | 344 | 4.0E-98 |
| sp|Q2KHX8|RCL1_BOVIN | RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus GN=RCL1 PE=2 SV=1 | 6 | 344 | 1.0E-97 |
| sp|Q9JJT0|RCL1_MOUSE | RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1 | 6 | 344 | 4.0E-97 |
| sp|P56175|RCL1_DROME | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3 | 4 | 342 | 2.0E-84 |
| sp|Q08096|RCL1_YEAST | RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1 SV=1 | 1 | 345 | 2.0E-82 |
| sp|Q23400|RCL1_CAEEL | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Caenorhabditis elegans GN=ZK1127.5 PE=3 SV=2 | 1 | 344 | 1.0E-79 |
| sp|Q9C578|RCL1_ARATH | Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1 | 8 | 345 | 3.0E-72 |
| sp|A8MAV7|RTCA_CALMQ | RNA 3'-terminal phosphate cyclase OS=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) GN=rtcA PE=3 SV=1 | 10 | 282 | 7.0E-25 |
| sp|A8A9W2|RTCA_IGNH4 | RNA 3'-terminal phosphate cyclase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rtcA PE=3 SV=1 | 10 | 282 | 7.0E-24 |
| sp|Q2HJ88|RTCA_BOVIN | RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1 | 10 | 283 | 2.0E-23 |
| sp|Q4R3J0|RTCA_MACFA | RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis GN=RTCA PE=2 SV=1 | 10 | 341 | 5.0E-23 |
| sp|O00442|RTCA_HUMAN | RNA 3'-terminal phosphate cyclase OS=Homo sapiens GN=RTCA PE=1 SV=1 | 10 | 341 | 1.0E-22 |
| sp|Q9D7H3|RTCA_MOUSE | RNA 3'-terminal phosphate cyclase OS=Mus musculus GN=RtcA PE=1 SV=2 | 10 | 283 | 2.0E-22 |
| sp|Q8TZC9|RTCA_METKA | RNA 3'-terminal phosphate cyclase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rtcA PE=3 SV=1 | 10 | 282 | 3.0E-21 |
| sp|Q5R7P3|RTCA_PONAB | RNA 3'-terminal phosphate cyclase OS=Pongo abelii GN=RTCA PE=2 SV=1 | 10 | 341 | 3.0E-21 |
| sp|A1RSJ7|RTCA_PYRIL | RNA 3'-terminal phosphate cyclase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rtcA PE=3 SV=1 | 10 | 282 | 4.0E-21 |
| sp|O27937|RTCA_METTH | RNA 3'-terminal phosphate cyclase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rtcA PE=3 SV=1 | 14 | 282 | 4.0E-20 |
| sp|B1YDJ1|RTCA_PYRNV | RNA 3'-terminal phosphate cyclase OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rtcA PE=3 SV=1 | 10 | 282 | 7.0E-20 |
| sp|A3DN24|RTCA_STAMF | RNA 3'-terminal phosphate cyclase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / JCM 9404 / F1) GN=rtcA PE=3 SV=2 | 10 | 282 | 8.0E-20 |
| sp|Q97W04|RTCA_SULSO | RNA 3'-terminal phosphate cyclase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rtcA PE=3 SV=2 | 10 | 280 | 2.0E-19 |
| sp|Q8U0N7|RTCA_PYRFU | RNA 3'-terminal phosphate cyclase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rtc PE=1 SV=1 | 10 | 315 | 1.0E-18 |
| sp|C3NMT8|RTCA_SULIN | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rtcA PE=3 SV=1 | 10 | 280 | 2.0E-18 |
| sp|C4KKE6|RTCA_SULIK | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-18 |
| sp|C3MKC1|RTCA_SULIL | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-18 |
| sp|C3N179|RTCA_SULIA | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain M.16.27) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-18 |
| sp|C3N969|RTCA_SULIY | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-18 |
| sp|C3MU91|RTCA_SULIM | RNA 3'-terminal phosphate cyclase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-18 |
| sp|A3MXQ7|RTCA_PYRCJ | RNA 3'-terminal phosphate cyclase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rtcA PE=3 SV=1 | 10 | 282 | 5.0E-18 |
| sp|Q8ZST4|RTCA_PYRAE | RNA 3'-terminal phosphate cyclase OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rtcA PE=3 SV=1 | 10 | 277 | 7.0E-18 |
| sp|Q60335|RTCA_METJA | RNA 3'-terminal phosphate cyclase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rtcA PE=3 SV=1 | 10 | 322 | 4.0E-17 |
| sp|Q4JB78|RTCA_SULAC | RNA 3'-terminal phosphate cyclase OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rtcA PE=3 SV=1 | 10 | 280 | 1.0E-16 |
| sp|Q8TH85|RTCA_METAC | RNA 3'-terminal phosphate cyclase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rtcA PE=3 SV=1 | 10 | 213 | 1.0E-16 |
| sp|Q5JIQ0|RTCA_THEKO | RNA 3'-terminal phosphate cyclase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rtcA PE=3 SV=1 | 10 | 315 | 1.0E-16 |
| sp|Q9V0Z6|RTCA_PYRAB | RNA 3'-terminal phosphate cyclase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rtcA PE=3 SV=1 | 10 | 282 | 2.0E-16 |
| sp|A4YEC3|RTCA_METS5 | RNA 3'-terminal phosphate cyclase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rtcA PE=3 SV=1 | 24 | 282 | 3.0E-16 |
| sp|Q8PXC4|RTCA_METMA | RNA 3'-terminal phosphate cyclase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rtcA PE=3 SV=1 | 10 | 282 | 4.0E-16 |
| sp|A2BN21|RTCA_HYPBU | RNA 3'-terminal phosphate cyclase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403 / PLM1-5) GN=rtcA PE=3 SV=1 | 10 | 282 | 5.0E-16 |
| sp|A0B532|RTCA_METTP | RNA 3'-terminal phosphate cyclase OS=Methanosaeta thermophila (strain DSM 6194 / JCM 14653 / NBRC 101360 / PT) GN=rtcA PE=3 SV=2 | 10 | 280 | 1.0E-15 |
| sp|O59198|RTCA_PYRHO | RNA 3'-terminal phosphate cyclase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rtcA PE=1 SV=2 | 10 | 282 | 2.0E-15 |
| sp|O28837|RTCA_ARCFU | RNA 3'-terminal phosphate cyclase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rtcA PE=3 SV=1 | 10 | 279 | 2.0E-15 |
| sp|Q974U1|RTCA_SULTO | RNA 3'-terminal phosphate cyclase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rtcA PE=1 SV=1 | 10 | 279 | 3.0E-15 |
| sp|B6YSJ5|RTCA_THEON | RNA 3'-terminal phosphate cyclase OS=Thermococcus onnurineus (strain NA1) GN=rtcA PE=3 SV=1 | 10 | 280 | 3.0E-15 |
| sp|C5A2A3|RTCA_THEGJ | RNA 3'-terminal phosphate cyclase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rtcA PE=3 SV=1 | 10 | 280 | 6.0E-15 |
| sp|Q12V70|RTCA_METBU | RNA 3'-terminal phosphate cyclase OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rtcA PE=3 SV=1 | 10 | 213 | 8.0E-15 |
| sp|C6A4N4|RTCA_THESM | RNA 3'-terminal phosphate cyclase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rtcA PE=3 SV=1 | 10 | 280 | 2.0E-14 |
| sp|B2IWJ8|RTCA_NOSP7 | RNA 3'-terminal phosphate cyclase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rtcA PE=3 SV=1 | 10 | 245 | 1.0E-13 |
| sp|Q8Y2V6|RTCA_RALSO | RNA 3'-terminal phosphate cyclase OS=Ralstonia solanacearum (strain GMI1000) GN=rtcA PE=3 SV=1 | 10 | 208 | 2.0E-13 |
| sp|B8D680|RTCA_DESK1 | RNA 3'-terminal phosphate cyclase OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rtcA PE=3 SV=1 | 10 | 282 | 3.0E-13 |
| sp|Q46DV9|RTCA_METBF | RNA 3'-terminal phosphate cyclase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rtcA PE=3 SV=1 | 10 | 282 | 4.0E-13 |
| sp|O15746|RTCA_DICDI | Probable RNA 3'-terminal phosphate cyclase OS=Dictyostelium discoideum GN=rtca PE=3 SV=1 | 10 | 283 | 5.0E-13 |
| sp|B1L6E9|RTCA_KORCO | RNA 3'-terminal phosphate cyclase OS=Korarchaeum cryptofilum (strain OPF8) GN=rtcA PE=3 SV=1 | 10 | 282 | 1.0E-12 |
| sp|Q3M6L1|RTCA_ANAVT | RNA 3'-terminal phosphate cyclase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rtcA PE=3 SV=1 | 10 | 245 | 2.0E-12 |
| sp|Q8YVS3|RTCA_NOSS1 | RNA 3'-terminal phosphate cyclase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rtcA PE=3 SV=1 | 10 | 245 | 2.0E-12 |
| sp|O77264|RTCA_DROME | RNA 3'-terminal phosphate cyclase OS=Drosophila melanogaster GN=CG4061 PE=2 SV=1 | 10 | 339 | 2.0E-12 |
| sp|Q9YES0|RTCA_AERPE | RNA 3'-terminal phosphate cyclase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rtcA PE=3 SV=2 | 10 | 282 | 7.0E-12 |
| sp|O66884|RTCA_AQUAE | RNA 3'-terminal phosphate cyclase OS=Aquifex aeolicus (strain VF5) GN=rtcA PE=3 SV=1 | 10 | 283 | 1.0E-10 |
| sp|Q2Y720|RTCA_NITMU | RNA 3'-terminal phosphate cyclase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rtcA PE=3 SV=1 | 10 | 282 | 1.0E-09 |
| sp|B7L4U9|RTCA_ECO55 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain 55989 / EAEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 3.0E-09 |
| sp|C4ZVX1|RTCA_ECOBW | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rtcA PE=3 SV=1 | 10 | 190 | 4.0E-09 |
| sp|B1X765|RTCA_ECODH | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12 / DH10B) GN=rtcA PE=3 SV=1 | 10 | 190 | 4.0E-09 |
| sp|P46849|RTCA_ECOLI | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain K12) GN=rtcA PE=1 SV=3 | 10 | 190 | 4.0E-09 |
| sp|B7NMI4|RTCA_ECO7I | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 5.0E-09 |
| sp|B1IP46|RTCA_ECOLC | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rtcA PE=3 SV=1 | 10 | 190 | 5.0E-09 |
| sp|A8A5M8|RTCA_ECOHS | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O9:H4 (strain HS) GN=rtcA PE=3 SV=1 | 10 | 190 | 5.0E-09 |
| sp|Q31VL3|RTCA_SHIBS | RNA 3'-terminal phosphate cyclase OS=Shigella boydii serotype 4 (strain Sb227) GN=rtcA PE=3 SV=2 | 10 | 190 | 7.0E-09 |
| sp|B2U3M8|RTCA_SHIB3 | RNA 3'-terminal phosphate cyclase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rtcA PE=3 SV=1 | 10 | 190 | 8.0E-09 |
| sp|B7M2I0|RTCA_ECO8A | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O8 (strain IAI1) GN=rtcA PE=3 SV=1 | 10 | 190 | 8.0E-09 |
| sp|B7LSC2|RTCA_ESCF3 | RNA 3'-terminal phosphate cyclase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rtcA PE=3 SV=1 | 10 | 190 | 1.0E-08 |
| sp|B7UKC4|RTCA_ECO27 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 2.0E-08 |
| sp|B5F8N4|RTCA_SALA4 | RNA 3'-terminal phosphate cyclase OS=Salmonella agona (strain SL483) GN=rtcA PE=3 SV=1 | 10 | 246 | 2.0E-08 |
| sp|P58127|RTCA_ECO57 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O157:H7 GN=rtcA PE=3 SV=1 | 10 | 190 | 2.0E-08 |
| sp|B7NE24|RTCA_ECOLU | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 2.0E-08 |
| sp|B5YTX2|RTCA_ECO5E | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 2.0E-08 |
| sp|B1LI80|RTCA_ECOSM | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 3.0E-08 |
| sp|B7N1J7|RTCA_ECO81 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O81 (strain ED1a) GN=rtcA PE=3 SV=1 | 10 | 190 | 4.0E-08 |
| sp|Q0TC48|RTCA_ECOL5 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 4.0E-08 |
| sp|Q1R5L5|RTCA_ECOUT | RNA 3'-terminal phosphate cyclase OS=Escherichia coli (strain UTI89 / UPEC) GN=rtcA PE=3 SV=2 | 10 | 190 | 5.0E-08 |
| sp|A1AGU3|RTCA_ECOK1 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O1:K1 / APEC GN=rtcA PE=3 SV=2 | 10 | 190 | 5.0E-08 |
| sp|B7MDP5|RTCA_ECO45 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 5.0E-08 |
| sp|B7KCF3|RTCA_CYAP7 | RNA 3'-terminal phosphate cyclase OS=Cyanothece sp. (strain PCC 7424) GN=rtcA PE=3 SV=1 | 10 | 277 | 5.0E-08 |
| sp|Q32AN4|RTCA_SHIDS | RNA 3'-terminal phosphate cyclase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rtcA PE=3 SV=2 | 10 | 190 | 7.0E-08 |
| sp|A7ZSU9|RTCA_ECO24 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rtcA PE=3 SV=1 | 10 | 190 | 8.0E-08 |
| sp|Q4KEB8|RTCA_PSEF5 | RNA 3'-terminal phosphate cyclase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rtcA PE=3 SV=2 | 7 | 185 | 8.0E-08 |
| sp|Q1IS76|RTCA_KORVE | RNA 3'-terminal phosphate cyclase OS=Koribacter versatilis (strain Ellin345) GN=rtcA PE=3 SV=1 | 10 | 242 | 1.0E-07 |
| sp|Q8FCS8|RTCA_ECOL6 | RNA 3'-terminal phosphate cyclase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rtcA PE=3 SV=2 | 10 | 190 | 1.0E-07 |
| sp|Q3YWK6|RTCA_SHISS | RNA 3'-terminal phosphate cyclase OS=Shigella sonnei (strain Ss046) GN=rtcA PE=3 SV=2 | 10 | 190 | 2.0E-07 |
| sp|Q8ZLI0|RTCA_SALTY | RNA 3'-terminal phosphate cyclase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rtcA PE=3 SV=1 | 10 | 246 | 2.0E-07 |
| sp|C0Q0J3|RTCA_SALPC | RNA 3'-terminal phosphate cyclase OS=Salmonella paratyphi C (strain RKS4594) GN=rtcA PE=3 SV=1 | 10 | 246 | 4.0E-07 |
| sp|B5R7J6|RTCA_SALG2 | RNA 3'-terminal phosphate cyclase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rtcA PE=3 SV=1 | 10 | 246 | 7.0E-07 |
| sp|B5R378|RTCA_SALEP | RNA 3'-terminal phosphate cyclase OS=Salmonella enteritidis PT4 (strain P125109) GN=rtcA PE=3 SV=1 | 10 | 246 | 7.0E-07 |
| sp|B4TKU5|RTCA_SALHS | RNA 3'-terminal phosphate cyclase OS=Salmonella heidelberg (strain SL476) GN=rtcA PE=3 SV=1 | 10 | 246 | 8.0E-07 |
| sp|B7V0C8|RTCA_PSEA8 | RNA 3'-terminal phosphate cyclase OS=Pseudomonas aeruginosa (strain LESB58) GN=rtcA PE=3 SV=1 | 10 | 164 | 2.0E-06 |
| sp|Q9HVJ9|RTCA_PSEAE | RNA 3'-terminal phosphate cyclase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rtcA PE=3 SV=1 | 10 | 164 | 2.0E-06 |
| sp|Q02G92|RTCA_PSEAB | RNA 3'-terminal phosphate cyclase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rtcA PE=3 SV=1 | 10 | 164 | 2.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|055630 MSSSLLAFSGHQHLRHHLVLSLLSGKHVKIDKIRPDDKNPGLRDYEISLLRLLERVTNGTVIEISVTGTALLLRP GVISGGPVVHECPLSRSVGYFLEPIIMIAPFSKKTLNLTLKGITTDENDLSVDLLRTVTLPHLQLFGLSDGLELR IKKRGATPAGGGEVQFLCPTVKQVKTLNFVDQGKIKRIRGVSHAVRVNPQFSNRMIEAARSLLNRYIPDIYLYSD VYKGDESGKSPGYALSLLAESTTGAIHCAEAISQPGVAPEDIGLKATRALLSEINRGGEDVGRCVMGEPTAKTVQ FLRDVRSFFGTSFKVVPADPNDSESAQLSYSCYGTGYVNANRTLA* |
| Coding | >Agabi119p4|055630 ATGTCGTCTTCTCTCCTCGCCTTCAGTGGCCACCAGCACCTCAGACACCACCTTGTCCTCTCTCTTCTCAGCGGA AAACATGTAAAGATAGACAAAATACGTCCAGACGACAAGAATCCTGGTCTCCGAGACTACGAGATCAGTCTTCTT AGACTATTAGAACGGGTCACAAATGGCACCGTAATAGAAATTTCTGTTACAGGTACCGCTCTGCTCCTTCGACCA GGAGTCATTTCTGGTGGTCCAGTAGTCCACGAATGCCCACTCTCCCGTTCTGTCGGATATTTTCTGGAACCTATC ATTATGATTGCTCCTTTTTCCAAAAAAACTTTGAACCTCACATTAAAAGGTATCACGACTGATGAAAATGATCTT TCCGTCGATCTATTGCGCACTGTCACGCTTCCCCACCTCCAATTATTCGGTCTGTCAGACGGTCTCGAATTACGA ATAAAAAAACGTGGTGCTACTCCAGCCGGAGGCGGTGAAGTGCAATTTTTATGCCCTACCGTCAAGCAGGTAAAA ACCCTGAACTTTGTCGATCAAGGAAAGATCAAACGAATACGAGGCGTTTCGCATGCCGTCCGTGTCAACCCACAA TTTTCTAACCGCATGATTGAAGCTGCAAGATCGTTATTGAACAGATATATTCCCGATATTTACCTCTATTCCGAT GTTTACAAGGGTGATGAGAGTGGAAAATCTCCTGGTTATGCCCTTAGTCTCCTAGCTGAGTCTACCACGGGAGCA ATACATTGCGCTGAAGCCATCTCACAACCTGGTGTTGCTCCAGAAGACATTGGTCTGAAAGCGACGCGAGCCCTT CTTTCCGAGATCAACAGAGGCGGTGAGGATGTAGGACGGTGCGTGATGGGTGAGCCGACTGCCAAAACGGTTCAA TTTTTGCGGGACGTACGAAGTTTCTTTGGGACATCTTTCAAAGTGGTACCTGCGGACCCAAACGATTCAGAGAGT GCTCAGCTCTCGTATTCCTGCTATGGGACTGGATACGTCAATGCGAACCGGACGCTTGCGTAG |
| Transcript | >Agabi119p4|055630 ATGTCGTCTTCTCTCCTCGCCTTCAGTGGCCACCAGCACCTCAGACACCACCTTGTCCTCTCTCTTCTCAGCGGA AAACATGTAAAGATAGACAAAATACGTCCAGACGACAAGAATCCTGGTCTCCGAGACTACGAGATCAGTCTTCTT AGACTATTAGAACGGGTCACAAATGGCACCGTAATAGAAATTTCTGTTACAGGTACCGCTCTGCTCCTTCGACCA GGAGTCATTTCTGGTGGTCCAGTAGTCCACGAATGCCCACTCTCCCGTTCTGTCGGATATTTTCTGGAACCTATC ATTATGATTGCTCCTTTTTCCAAAAAAACTTTGAACCTCACATTAAAAGGTATCACGACTGATGAAAATGATCTT TCCGTCGATCTATTGCGCACTGTCACGCTTCCCCACCTCCAATTATTCGGTCTGTCAGACGGTCTCGAATTACGA ATAAAAAAACGTGGTGCTACTCCAGCCGGAGGCGGTGAAGTGCAATTTTTATGCCCTACCGTCAAGCAGGTAAAA ACCCTGAACTTTGTCGATCAAGGAAAGATCAAACGAATACGAGGCGTTTCGCATGCCGTCCGTGTCAACCCACAA TTTTCTAACCGCATGATTGAAGCTGCAAGATCGTTATTGAACAGATATATTCCCGATATTTACCTCTATTCCGAT GTTTACAAGGGTGATGAGAGTGGAAAATCTCCTGGTTATGCCCTTAGTCTCCTAGCTGAGTCTACCACGGGAGCA ATACATTGCGCTGAAGCCATCTCACAACCTGGTGTTGCTCCAGAAGACATTGGTCTGAAAGCGACGCGAGCCCTT CTTTCCGAGATCAACAGAGGCGGTGAGGATGTAGGACGGTGCGTGATGGGTGAGCCGACTGCCAAAACGGTTCAA TTTTTGCGGGACGTACGAAGTTTCTTTGGGACATCTTTCAAAGTGGTACCTGCGGACCCAAACGATTCAGAGAGT GCTCAGCTCTCGTATTCCTGCTATGGGACTGGATACGTCAATGCGAACCGGACGCTTGCGTAG |
| Gene | >Agabi119p4|055630 ATGTCGTCTTCTCTCCTCGCCTTCAGTGGCCACCAGCACCTCAGACACCACCTTGTCCTCTCTCTTCTCAGCGGA AAACATGTAAAGATAGACAAAATACGTCCAGACGACAAGAATCCTGGTCTCCGAGGTGTGCCTGTATCTTCAACC TTGAATCACGCAAGACTCAACCCTTGTAGACTACGAGATCAGTCTTCTTAGACTATTAGAACGGGTCACAAATGG CACCGTAATAGAAATTTCTGTTACAGGTACGCGTCCGCATTTCAGTCCAATGAGTTATCTGAATCGCCCTTTGCA GGTACCGCTCTGCTCCTTCGACCAGGAGTCATTTCTGGTGGTCCAGTAGTCCACGAATGCCCACTCTCCCGTTCT GTCGGATATTTTCTGGAACCTATCATTATGATTGCTCCTTTTTCCAAAAAAACTTTGAACCTCACATTAAAAGGT ATCACGACTGATGAAAATGATCTTTCCGTATGTGCCTCGTCCTCCGTCTTTCAATGCTTTCTATGTGATCATAGG TCGATCTATTGCGCACTGTCACGCTTCCCCACCTCCAATTATTCGGTCTGTCAGACGGTCTCGAATTACGAATAA AAAAACGTGGTGCTACTCCAGCCGGAGGCGGTGAAGTGCAATTTTTATGCCCTACCGTCAAGCAGGTAAAAACCC TGAACTTTGTCGATCAAGGAAAGATCAAACGAATACGAGGCGTTTCGTGAGTTGAGTGCACCCATGCTGTAAAAA TGATTCTCATGTCTCTGTCAGGCATGCCGTCCGTGTCAACCCACAATTTTCTAACCGCATGATTGAAGCTGCAAG ATCGTTATTGAACAGATATATTCCCGATATTTACCTCTATTCCGATGTTTACAAGGGTGATGAGAGTGGAAAGTA AGTTTCAATGTTGTTTAGTGCAAGCGCAGAAGCCTGAAAATTTCACAAGATCTCCTGGTTATGCCCTTAGTCTCC TAGCTGAGTCTACCACGGGAGCAATACATTGCGCTGAAGCCATCTCACAACCTGGTGTTGCTCCAGAAGACATTG GTCTGAAAGCGACGCGAGCCCTTCTTTCCGAGATCAACAGAGGCGGGTGTGTAGATCGACGACACCAAACACTGG TGCTGCTCATGATGGTGCTCGGAAGTGAGGATGTAGGACGGTGCGTGATGGGTGAGCCGACTGCCAAAACGTGAG CTGAATTTCATCTTCACAAGTTATGGGTCGCATTGACGGTCGAGCTTCCAGGGTTCAATTTTTGCGGGACGTACG AAGTTTCTTTGGGACATCTTTCAAAGTGGTACCTGCGGACCCAAACGATTCAGAGAGTGCTCAGCTCTCGTATTC CTGCTATGGGACTGGATACGTCAATGCGAACCGGACGCTTGCGTAG |