Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|049520
Gene name
Locationscaffold_02:2610958..2611937
Strand-
Gene length (bp)979
Transcript length (bp)510
Coding sequence length (bp)510
Protein length (aa) 170

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 2.9E-16 6 70

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 1 87 9.0E-42
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1 1 82 2.0E-41
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1 1 82 2.0E-41
sp|F4K4E3|LSM4_ARATH Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 1 86 4.0E-41
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 1 118 6.0E-41
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Swissprot ID Swissprot Description Start End E-value
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 1 87 9.0E-42
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1 1 82 2.0E-41
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1 1 82 2.0E-41
sp|F4K4E3|LSM4_ARATH Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 1 86 4.0E-41
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 1 118 6.0E-41
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 1 87 9.0E-41
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 1 82 2.0E-39
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm4 PE=1 SV=1 1 88 7.0E-37
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1 1 116 5.0E-34
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4 OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1 1 114 6.0E-31
sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1 SV=1 1 82 1.0E-16
sp|Q9LM92|SMD3B_ARATH Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1 2 108 7.0E-11
sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1 2 75 1.0E-10
sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1 2 87 3.0E-10
sp|Q9S7E6|SMD3A_ARATH Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana GN=SMD3A PE=2 SV=1 2 75 2.0E-09
sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1 1 104 5.0E-08
sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1 2 75 6.0E-08
sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1 2 75 6.0E-08
sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1 2 75 6.0E-08
sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans GN=snr-1 PE=2 SV=2 2 120 3.0E-07
sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1 1 72 2.0E-06
sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1 1 72 2.0E-06
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GO

(None)

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|049520
MLPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYIRGSTIKYLRVPDTL
LDQVKEEQNRAREANRNSRGGHTGPNRGGRGAPIRGSRGGGRGGPLRGEDTSSEKENVQRMRRGVVRFNLFASVY
VNLPRRTRVMSPTLSYLDG*
Coding >Agabi119p4|049520
ATGCTGCCTCTATCCCTTCTCAGTGCTGCTCAAAACAAGCCCATGTTGGTCGAGCTCAAGAACGGCGAGACTTTC
AACGGCCATCTCGTGAACTGCGACAACTTTATGAACATCACCCTCAGAGAGGTGTATCAGACAAGCGCCGATGGG
GATAGATTCTGGAAACTCAAGGAATGCTACATCAGAGGAAGCACGATAAAATACCTACGCGTCCCAGATACCCTC
CTCGACCAAGTGAAGGAGGAACAAAATCGCGCTCGGGAAGCCAACAGGAATTCTCGCGGAGGACACACAGGACCT
AATAGAGGTGGTCGTGGTGCGCCTATCAGAGGTTCTCGAGGAGGTGGCCGCGGCGGTCCCCTACGCGGCGAGGAT
ACTAGTTCCGAGAAGGAAAACGTCCAGAGAATGAGGCGAGGAGTTGTTAGATTCAACTTATTTGCTAGCGTATAT
GTCAACCTGCCCCGCCGTACCCGTGTGATGTCACCGACGTTGTCGTATCTTGACGGATAA
Transcript >Agabi119p4|049520
ATGCTGCCTCTATCCCTTCTCAGTGCTGCTCAAAACAAGCCCATGTTGGTCGAGCTCAAGAACGGCGAGACTTTC
AACGGCCATCTCGTGAACTGCGACAACTTTATGAACATCACCCTCAGAGAGGTGTATCAGACAAGCGCCGATGGG
GATAGATTCTGGAAACTCAAGGAATGCTACATCAGAGGAAGCACGATAAAATACCTACGCGTCCCAGATACCCTC
CTCGACCAAGTGAAGGAGGAACAAAATCGCGCTCGGGAAGCCAACAGGAATTCTCGCGGAGGACACACAGGACCT
AATAGAGGTGGTCGTGGTGCGCCTATCAGAGGTTCTCGAGGAGGTGGCCGCGGCGGTCCCCTACGCGGCGAGGAT
ACTAGTTCCGAGAAGGAAAACGTCCAGAGAATGAGGCGAGGAGTTGTTAGATTCAACTTATTTGCTAGCGTATAT
GTCAACCTGCCCCGCCGTACCCGTGTGATGTCACCGACGTTGTCGTATCTTGACGGATAA
Gene >Agabi119p4|049520
ATGGTATGTCGAAAAAACATATGTTTAGTATGGTCAATGCTCACGTTTGTTTAGCTGCCTCTATCCCTTCTCAGT
GCTGCTCAAAACAAGCCCATGGCAAGTCCATGTTTCTCCTAATCGCTCCTTCGATCTGACCAGCAATCTCCAGTT
GGTCGAGCTCAAGAACGGCGAGACTTTCAACGGCCATCTCGTGAACTGCGACAACTTTATGAACATCACCCTCAG
AGAGGTGTATCAGACAAGCGCCGATGGGGATAGATTCTGGAAACTCAAGGAATGCTACATCAGAGGAAGCACGGT
AATTTCTGGCATTTCTCGTCTCCCTACCTATCTCAGCGCTGATCGCTATCAGATAAAATACCTACGCGTCCCAGA
TACCCTCCTCGACCAAGTGAAGGAGGAACAAAATCGCGCTCGGGAAGCCAACAGGAATTCTCGCGGAGGACACAC
AGGACCTAATAGAGGTCAGTGTTATCGAATCTATCATGTTGCCTTTTTTCTAAAAATCTTGTTAGGTGGTCGTGG
TGCGCCTATCAGAGGTACGTCCTATCTGATCTGTCAATCTGTCCGAGAGTGTGACATAAGATATTTTAGGTTCTC
GAGGAGGTGGCCGCGGCGGTCCCCTACGCGGCGGTAGAGGTCGTGGACGTGGATTATGATGATACTGTTTCGATT
CGTGACCCGAACAAAAGTGTAAACCAAACAGCTGGTTTTCTTTAGAGGATACTAGTTCCGAGAAGGAAAACGTCC
AGAGAATGAGGCGAGGAGTTGTTAGATTGTGAGCTCTCAATTACGCACCGTATAATCACTTTTCACATCTGTTGT
AGCAACTTATTTGCTAGCGTATATGTCAACCTGTGTGTATCATCCCTGCATCAGATTGTGGTGTACTCCATAGAC
TGAAGTCTGATTGAAGCCCTTGATTAGGCCCCGCCGTACCCGTGTGATGTCACCGACGTTGTCGTATCTTGACGG
ATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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