Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|049200
Gene name
Locationscaffold_02:2540067..2541829
Strand-
Gene length (bp)1762
Transcript length (bp)1158
Coding sequence length (bp)1158
Protein length (aa) 386

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03388 Lectin_leg-like Legume-like lectin family 4.6E-60 47 264

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 41 288 1.0E-43
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 48 334 5.0E-42
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 48 334 5.0E-42
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 48 334 7.0E-42
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 48 334 3.0E-41
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Swissprot ID Swissprot Description Start End E-value
sp|O94401|YQF8_SCHPO L-type lectin-like domain-containing protein C126.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.08c PE=3 SV=1 41 288 1.0E-43
sp|Q5RCF0|LMA2L_PONAB VIP36-like protein OS=Pongo abelii GN=LMAN2L PE=3 SV=1 48 334 5.0E-42
sp|Q9H0V9|LMA2L_HUMAN VIP36-like protein OS=Homo sapiens GN=LMAN2L PE=1 SV=1 48 334 5.0E-42
sp|P59481|LMA2L_MOUSE VIP36-like protein OS=Mus musculus GN=Lman2l PE=1 SV=1 48 334 7.0E-42
sp|Q2HJD1|LMA2L_BOVIN VIP36-like protein OS=Bos taurus GN=LMAN2L PE=2 SV=1 48 334 3.0E-41
sp|Q12907|LMAN2_HUMAN Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1 48 280 3.0E-37
sp|Q9DBH5|LMAN2_MOUSE Vesicular integral-membrane protein VIP36 OS=Mus musculus GN=Lman2 PE=1 SV=2 48 279 3.0E-37
sp|P49256|LMAN2_CANLF Vesicular integral-membrane protein VIP36 OS=Canis lupus familiaris GN=LMAN2 PE=1 SV=1 48 280 6.0E-37
sp|Q9D0F3|LMAN1_MOUSE Protein ERGIC-53 OS=Mus musculus GN=Lman1 PE=1 SV=1 65 277 7.0E-19
sp|Q62902|LMAN1_RAT Protein ERGIC-53 OS=Rattus norvegicus GN=Lman1 PE=1 SV=1 65 277 2.0E-18
sp|P49257|LMAN1_HUMAN Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2 65 264 6.0E-18
sp|Q9TU32|LMAN1_CHLAE Protein ERGIC-53 OS=Chlorocebus aethiops GN=LMAN1 PE=2 SV=1 65 264 1.0E-17
sp|Q8VCD3|LMA1L_MOUSE Protein ERGIC-53-like OS=Mus musculus GN=Lman1l PE=2 SV=2 65 305 1.0E-10
sp|Q9HAT1|LMA1L_HUMAN Protein ERGIC-53-like OS=Homo sapiens GN=LMAN1L PE=2 SV=2 65 276 1.0E-10
sp|P36137|UIP5_YEAST Protein UIP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UIP5 PE=1 SV=1 51 266 4.0E-10
sp|Q5FB95|LMA1L_RAT Protein ERGIC-53-like OS=Rattus norvegicus GN=Lman1l PE=1 SV=1 65 305 1.0E-09
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 28 0.45

Transmembrane Domains

Domain # Start End Length
1 303 325 22
2 338 360 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|049200
MLPAVYSMFSISSLLVWSSLLLSGVQAGSGEVTTRIGNRTIERTLNLRTHSLYAPYIDQDLQNRWWDFGADAYIN
TNKHVRLTRNKPSLMGWLWSRLVLAPTNFVVEVEYKISGDSTHLFGDGLAMWITTERAQPGPVFGSKDNFNGLAV
VVDTYSNSRHSYSFPRISGFIFDGNQSYNVATDGDGQSVGGCSANIRRTNVATKIKVTYVKGSFLDVKVQYKAWD
DWSDCFYVEGVVLPNNLYLGFSAMTGDVSDAHDIISVTTSSAILSPDTSPKDKAKKGIFGSSKSGSSPSSSSGQE
SGSWFGLFFKLLLLAGVVGGGWYGWKEYQRRKRYGGFGAGNNFGGGGGIGGGGGGMGMGMGGGGSGTFGMGGGRY
RNPYANEKRF*
Coding >Agabi119p4|049200
ATGCTACCAGCTGTTTATAGCATGTTTTCCATCTCCAGTCTCCTCGTATGGTCGTCGCTTCTACTCAGCGGAGTG
CAGGCGGGTAGTGGTGAAGTCACCACGCGGATTGGGAACCGCACAATTGAAAGAACTTTGAACCTCCGAACGCAT
TCGTTATACGCTCCTTACATTGATCAAGATCTTCAAAACAGGTGGTGGGACTTCGGCGCCGACGCCTACATCAAC
ACAAACAAACATGTCCGACTAACACGAAATAAACCCTCGTTAATGGGATGGTTATGGTCTCGCCTGGTGTTGGCA
CCAACGAATTTTGTTGTGGAAGTTGAATATAAGATCTCCGGGGACTCTACTCACCTATTCGGTGATGGACTCGCC
ATGTGGATCACGACTGAACGAGCCCAACCAGGCCCCGTTTTCGGAAGCAAAGACAACTTTAATGGTCTTGCAGTG
GTTGTCGATACTTACTCTAATTCCCGGCATTCATACTCCTTCCCCCGCATCTCCGGTTTTATATTCGACGGAAAC
CAAAGCTACAACGTCGCCACTGATGGAGACGGTCAATCTGTTGGCGGGTGTTCTGCCAACATTCGTCGAACGAAT
GTCGCCACGAAAATCAAGGTGACATACGTCAAAGGTTCTTTCCTCGACGTGAAAGTACAATACAAAGCCTGGGAT
GACTGGTCAGACTGTTTCTACGTCGAGGGCGTTGTACTGCCCAACAACCTATACCTCGGCTTTAGCGCCATGACA
GGCGATGTCTCCGACGCACACGATATCATATCTGTAACAACATCATCAGCAATCCTATCCCCCGACACCTCCCCA
AAAGACAAAGCCAAAAAGGGCATCTTCGGCAGCTCCAAATCCGGCTCATCTCCGTCATCTTCGTCAGGCCAAGAA
AGTGGAAGTTGGTTCGGCCTGTTTTTCAAACTTCTCTTGCTAGCCGGGGTTGTTGGTGGTGGTTGGTACGGATGG
AAAGAATATCAACGTAGAAAACGGTATGGAGGTTTCGGAGCCGGTAATAACTTTGGGGGAGGAGGCGGTATCGGA
GGAGGAGGTGGTGGTATGGGTATGGGCATGGGTGGTGGTGGTAGTGGTACGTTTGGTATGGGTGGTGGGAGATAT
CGAAATCCGTATGCGAACGAAAAACGGTTTTGA
Transcript >Agabi119p4|049200
ATGCTACCAGCTGTTTATAGCATGTTTTCCATCTCCAGTCTCCTCGTATGGTCGTCGCTTCTACTCAGCGGAGTG
CAGGCGGGTAGTGGTGAAGTCACCACGCGGATTGGGAACCGCACAATTGAAAGAACTTTGAACCTCCGAACGCAT
TCGTTATACGCTCCTTACATTGATCAAGATCTTCAAAACAGGTGGTGGGACTTCGGCGCCGACGCCTACATCAAC
ACAAACAAACATGTCCGACTAACACGAAATAAACCCTCGTTAATGGGATGGTTATGGTCTCGCCTGGTGTTGGCA
CCAACGAATTTTGTTGTGGAAGTTGAATATAAGATCTCCGGGGACTCTACTCACCTATTCGGTGATGGACTCGCC
ATGTGGATCACGACTGAACGAGCCCAACCAGGCCCCGTTTTCGGAAGCAAAGACAACTTTAATGGTCTTGCAGTG
GTTGTCGATACTTACTCTAATTCCCGGCATTCATACTCCTTCCCCCGCATCTCCGGTTTTATATTCGACGGAAAC
CAAAGCTACAACGTCGCCACTGATGGAGACGGTCAATCTGTTGGCGGGTGTTCTGCCAACATTCGTCGAACGAAT
GTCGCCACGAAAATCAAGGTGACATACGTCAAAGGTTCTTTCCTCGACGTGAAAGTACAATACAAAGCCTGGGAT
GACTGGTCAGACTGTTTCTACGTCGAGGGCGTTGTACTGCCCAACAACCTATACCTCGGCTTTAGCGCCATGACA
GGCGATGTCTCCGACGCACACGATATCATATCTGTAACAACATCATCAGCAATCCTATCCCCCGACACCTCCCCA
AAAGACAAAGCCAAAAAGGGCATCTTCGGCAGCTCCAAATCCGGCTCATCTCCGTCATCTTCGTCAGGCCAAGAA
AGTGGAAGTTGGTTCGGCCTGTTTTTCAAACTTCTCTTGCTAGCCGGGGTTGTTGGTGGTGGTTGGTACGGATGG
AAAGAATATCAACGTAGAAAACGGTATGGAGGTTTCGGAGCCGGTAATAACTTTGGGGGAGGAGGCGGTATCGGA
GGAGGAGGTGGTGGTATGGGTATGGGCATGGGTGGTGGTGGTAGTGGTACGTTTGGTATGGGTGGTGGGAGATAT
CGAAATCCGTATGCGAACGAAAAACGGTTTTGA
Gene >Agabi119p4|049200
ATGCTACCAGCTGTTTATAGCATGTTTTCCATCTCCAGTCTCCTCGTATGGTCGTCGCTTCTACTCAGCGGAGTG
CAGGCGGGTAGTGGTGAAGTCACCACGCGGATTGGGAACCGCACAATTGAAAGAGTATGTGTTTGCATTAGGGAA
CGATGAGAGGGCAGTTGTAGAACGCATCCTCGTCATTGAACCCATGCCATAATCACACAAACTCATTCCGGTCAT
AGACTTTGAACCTCCGAACGCATTCGTTATACGCTCCTTACATTGATCAAGATCTTCAAAACAGGCATGTCGACT
TTCCTGTTACTACGCTTCATGAATTAAATTGACCTTGTTGTACAGGTGGTGGGACTTCGGCGCCGACGCCTACAT
CGTATGTCAATGGTCTCGTCACAAGATACTGAAAGTAATGTTCACCTTTAGAACACAAACAAACATGTCCGACTA
ACACGAAATAAACCCTCGTTAATGGTATGACTTTTGGCACCTAATCATTCAGAGTTAATTGAGCACTTTCCATAG
GGATGGTTATGGTCTCGCCTGGTGTTGGCACCAACGAATTTTGTTGTGGAAGTTGAATATAAGGCAAGACCTACC
CAGTTGTGCCACTGCATGATGATATTGAGCAAACTTGTCATATAGATCTCCGGGGACTCTACTCACCTATTCGGT
GATGGACTCGCCATGTGGATCACGACTGAACGAGCCCAACCAGGCCCCGTTTTCGGAAGCAAAGGTTCAGCTTCA
TCTTCTATCTACTTCCTTTTTTGCTCATTCTCCCCCTTTATAGACAACTTTAATGGTCTTGCAGTGGTTGTCGAT
ACGTACGCTCTTTGCCCGACATTCGGTTCCTTGATCTCAATATAGGCTTCTAGTTACTCTAATTCCCGGCATTCA
TACTCCTTCCCCCGCATCTCCGGTTTTATATTCGACGGAAACCAAAGCTACAACGTCGCCACTGATGGAGACGGT
CAATCTGTTGGCGGGTGTTCTGTGAGTTTCTATTTTGATCCACTAGCGGCCCCGCCCGTTCACCTTTCTAACAAC
TCTCACAGGCCAACATTCGTCGAACGAATGTCGCCACGAAAATCAAGGTGACATACGTCAAAGGTTCTTTCCTCG
ACGTGAAAGTACAATACAAAGCCTGTACGTCCAATTCTCTTCCCGAAAGTGACCCCGACGATTTATGATCGGTTT
TTTTAAAAAATTTAGGGGATGACTGGTCAGACTGTTTCTACGTCGAGGGCGTTGTACTGCCCAACAACCTATACC
TCGGCTTTAGCGCCATGACAGGCGATGTCTCCGACGCACACGAGTACGTTCCTCTCCCTCTCATATTCTCAAAAA
TAGCACATACTCACCTATCGTCATCAGTATCATATCTGTAACAACATCATCAGCAATCCTATCCCCCGACACCTC
CCCAAAAGACAAAGCCAAAAAGGGCATCTTCGGCAGCTCCAAATCCGGCTCATCTCCGTCATCTTCGTCAGGCCA
AGAAAGTGGAAGTTGGTTCGGCCTGTTTTTCAAACTTCTCTTGCTAGCCGGGGTTGTTGGTGGTGGTTGGTACGG
ATGGAAAGAATATCAACGTAGAAAACGGTATGGAGGTTTCGGAGCCGGTAATAACTTTGGGGGAGGAGGCGGTAT
CGGAGGAGGAGGTGGTGGTATGGGTATGGGCATGGGTGGTGGTGGTAGTGGTACGTTTGGTATGGGTGGTGGGAG
ATATCGAAATCCGTATGCGAACGAAAAACGGTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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