© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|048600 |
| Gene name | |
| Location | scaffold_02:2434386..2436557 |
| Strand | - |
| Gene length (bp) | 2171 |
| Transcript length (bp) | 1596 |
| Coding sequence length (bp) | 1596 |
| Protein length (aa) | 532 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase | 2.5E-25 | 113 | 260 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09709|YA32_SCHPO | Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1 | 13 | 286 | 5.0E-91 |
| sp|Q12069|PUS9_YEAST | tRNA pseudouridine(32) synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS9 PE=1 SV=1 | 19 | 286 | 5.0E-84 |
| sp|Q12362|RIB2_YEAST | Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIB2 PE=1 SV=1 | 19 | 287 | 1.0E-75 |
| sp|Q149F1|RUSD2_MOUSE | RNA pseudouridylate synthase domain-containing protein 2 OS=Mus musculus GN=Rpusd2 PE=1 SV=2 | 18 | 286 | 2.0E-75 |
| sp|Q8IZ73|RUSD2_HUMAN | RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2 | 18 | 294 | 4.0E-74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09709|YA32_SCHPO | Uncharacterized protein C18B11.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18B11.02c PE=3 SV=1 | 13 | 286 | 5.0E-91 |
| sp|Q12069|PUS9_YEAST | tRNA pseudouridine(32) synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS9 PE=1 SV=1 | 19 | 286 | 5.0E-84 |
| sp|Q12362|RIB2_YEAST | Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIB2 PE=1 SV=1 | 19 | 287 | 1.0E-75 |
| sp|Q149F1|RUSD2_MOUSE | RNA pseudouridylate synthase domain-containing protein 2 OS=Mus musculus GN=Rpusd2 PE=1 SV=2 | 18 | 286 | 2.0E-75 |
| sp|Q8IZ73|RUSD2_HUMAN | RNA pseudouridylate synthase domain-containing protein 2 OS=Homo sapiens GN=RPUSD2 PE=1 SV=2 | 18 | 294 | 4.0E-74 |
| sp|Q0E0Y3|PUS7_ORYSJ | RNA pseudouridine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2 | 18 | 272 | 6.0E-55 |
| sp|O16686|YK27_CAEEL | Uncharacterized protein K07E8.7 OS=Caenorhabditis elegans GN=K07E8.7 PE=3 SV=1 | 18 | 286 | 3.0E-54 |
| sp|Q9LU60|PUS7_ARATH | RNA pseudouridine synthase 7 OS=Arabidopsis thaliana GN=At5g51140 PE=2 SV=1 | 18 | 322 | 1.0E-53 |
| sp|P53294|PUS6_YEAST | tRNA pseudouridine(31) synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS6 PE=1 SV=1 | 13 | 273 | 7.0E-44 |
| sp|Q9HZM9|RLUC_PSEAE | Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rluC PE=3 SV=1 | 58 | 274 | 2.0E-20 |
| sp|Q8Z7J7|RLUC_SALTI | Ribosomal large subunit pseudouridine synthase C OS=Salmonella typhi GN=rluC PE=3 SV=1 | 53 | 274 | 4.0E-20 |
| sp|Q8ZQ16|RLUC_SALTY | Ribosomal large subunit pseudouridine synthase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rluC PE=3 SV=1 | 53 | 274 | 7.0E-20 |
| sp|P0AA40|RLUC_SHIFL | Ribosomal large subunit pseudouridine synthase C OS=Shigella flexneri GN=rluC PE=3 SV=1 | 53 | 274 | 1.0E-19 |
| sp|P0AA39|RLUC_ECOLI | Ribosomal large subunit pseudouridine synthase C OS=Escherichia coli (strain K12) GN=rluC PE=1 SV=1 | 53 | 274 | 1.0E-19 |
| sp|Q8X8J3|RLUC_ECO57 | Ribosomal large subunit pseudouridine synthase C OS=Escherichia coli O157:H7 GN=rluC PE=3 SV=1 | 53 | 274 | 1.0E-19 |
| sp|Q8FIP7|RLUC_ECOL6 | Ribosomal large subunit pseudouridine synthase C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluC PE=3 SV=1 | 53 | 274 | 1.0E-19 |
| sp|Q5M721|PUS5_ARATH | RNA pseudouridine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2 | 62 | 272 | 2.0E-19 |
| sp|Q9CM51|RLUC_PASMU | Ribosomal large subunit pseudouridine synthase C OS=Pasteurella multocida (strain Pm70) GN=rluC PE=3 SV=1 | 62 | 274 | 2.0E-19 |
| sp|Q9ZMA1|Y347_HELPJ | Uncharacterized RNA pseudouridine synthase jhp_0321 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_0321 PE=3 SV=1 | 111 | 272 | 7.0E-19 |
| sp|Q8XYX8|RLUD_RALSO | Ribosomal large subunit pseudouridine synthase D OS=Ralstonia solanacearum (strain GMI1000) GN=rluD PE=3 SV=1 | 39 | 273 | 7.0E-19 |
| sp|P44433|RLUC_HAEIN | Ribosomal large subunit pseudouridine synthase C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluC PE=3 SV=1 | 58 | 274 | 9.0E-19 |
| sp|P59840|TRUC_HAEDU | tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=truC PE=3 SV=1 | 102 | 274 | 9.0E-18 |
| sp|O67638|Y1758_AQUAE | Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1 | 52 | 272 | 1.0E-17 |
| sp|Q82WZ5|RLUD_NITEU | Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3 SV=1 | 102 | 275 | 1.0E-17 |
| sp|O25114|Y347_HELPY | Uncharacterized RNA pseudouridine synthase HP_0347 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0347 PE=1 SV=1 | 111 | 272 | 1.0E-17 |
| sp|Q8D8G1|RLUC_VIBVU | Ribosomal large subunit pseudouridine synthase C OS=Vibrio vulnificus (strain CMCP6) GN=rluC PE=3 SV=1 | 39 | 277 | 2.0E-17 |
| sp|Q8Z9J5|RLUA_SALTI | Ribosomal large subunit pseudouridine synthase A OS=Salmonella typhi GN=rluA PE=3 SV=3 | 104 | 273 | 2.0E-17 |
| sp|P59835|RLUC_HAEDU | Ribosomal large subunit pseudouridine synthase C OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3 SV=1 | 58 | 274 | 3.0E-17 |
| sp|Q8ZRV9|RLUA_SALTY | Ribosomal large subunit pseudouridine synthase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rluA PE=3 SV=3 | 104 | 273 | 3.0E-17 |
| sp|Q9KQH0|RLUC_VIBCH | Ribosomal large subunit pseudouridine synthase C OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rluC PE=3 SV=1 | 62 | 277 | 4.0E-17 |
| sp|Q87N15|RLUC_VIBPA | Ribosomal large subunit pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluC PE=3 SV=1 | 39 | 288 | 7.0E-17 |
| sp|P0AA38|RLUA_SHIFL | Ribosomal large subunit pseudouridine synthase A OS=Shigella flexneri GN=rluA PE=3 SV=2 | 104 | 273 | 1.0E-16 |
| sp|P0AA37|RLUA_ECOLI | Ribosomal large subunit pseudouridine synthase A OS=Escherichia coli (strain K12) GN=rluA PE=1 SV=2 | 104 | 273 | 1.0E-16 |
| sp|Q89AH2|RLUC_BUCBP | Ribosomal large subunit pseudouridine synthase C OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rluC PE=3 SV=1 | 62 | 272 | 1.0E-16 |
| sp|Q8FL93|RLUA_ECOL6 | Ribosomal large subunit pseudouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluA PE=3 SV=3 | 104 | 273 | 2.0E-16 |
| sp|Q45826|Y901_CHLAA | Uncharacterized RNA pseudouridine synthase Caur_0901 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_0901 PE=3 SV=2 | 52 | 276 | 2.0E-16 |
| sp|Q8XA10|RLUA_ECO57 | Ribosomal large subunit pseudouridine synthase A OS=Escherichia coli O157:H7 GN=rluA PE=3 SV=3 | 104 | 273 | 3.0E-16 |
| sp|Q8ZIK1|RLUA_YERPE | Ribosomal large subunit pseudouridine synthase A OS=Yersinia pestis GN=rluA PE=3 SV=1 | 104 | 274 | 4.0E-16 |
| sp|Q8PHN2|RLUD_XANAC | Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rluD PE=3 SV=1 | 39 | 272 | 7.0E-16 |
| sp|Q8P682|RLUD_XANCP | Ribosomal large subunit pseudouridine synthase D OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=rluD PE=3 SV=1 | 39 | 295 | 8.0E-16 |
| sp|P50513|RLUD_ZYMMO | Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rluD PE=3 SV=2 | 110 | 276 | 2.0E-15 |
| sp|Q87LD3|RLUA_VIBPA | Ribosomal large subunit pseudouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluA PE=3 SV=1 | 151 | 282 | 2.0E-15 |
| sp|Q0DST9|PUS5_ORYSJ | RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica GN=Os03g0288500 PE=2 SV=2 | 42 | 273 | 3.0E-15 |
| sp|Q8K9J8|RLUC_BUCAP | Ribosomal large subunit pseudouridine synthase C OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=rluC PE=3 SV=1 | 53 | 274 | 4.0E-15 |
| sp|Q45480|YLYB_BACSU | Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) GN=ylyB PE=3 SV=3 | 45 | 273 | 5.0E-15 |
| sp|Q9CK02|RLUA_PASMU | Ribosomal large subunit pseudouridine synthase A OS=Pasteurella multocida (strain Pm70) GN=rluA PE=3 SV=1 | 102 | 273 | 7.0E-15 |
| sp|P57430|RLUC_BUCAI | Ribosomal large subunit pseudouridine synthase C OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=rluC PE=3 SV=1 | 37 | 275 | 7.0E-15 |
| sp|Q9CKA6|RLUD_PASMU | Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida (strain Pm70) GN=rluD PE=3 SV=1 | 34 | 272 | 8.0E-15 |
| sp|P72970|Y1592_SYNY3 | Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1592 PE=3 SV=1 | 42 | 273 | 2.0E-14 |
| sp|Q8ZFU1|RLUC_YERPE | Ribosomal large subunit pseudouridine synthase C OS=Yersinia pestis GN=rluC PE=3 SV=1 | 53 | 272 | 2.0E-14 |
| sp|Q9JVB6|RLUD_NEIMA | Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rluD PE=3 SV=1 | 39 | 276 | 2.0E-14 |
| sp|Q8DCG0|RLUA_VIBVU | Ribosomal large subunit pseudouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=rluA PE=3 SV=1 | 115 | 274 | 3.0E-14 |
| sp|O31613|YJBO_BACSU | Uncharacterized RNA pseudouridine synthase YjbO OS=Bacillus subtilis (strain 168) GN=yjbO PE=3 SV=1 | 65 | 276 | 3.0E-14 |
| sp|O66114|Y505_ZYMMO | Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0505 PE=3 SV=2 | 112 | 284 | 4.0E-14 |
| sp|Q9KU20|RLUD_VIBCH | Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rluD PE=3 SV=1 | 30 | 272 | 4.0E-14 |
| sp|Q9K0B0|RLUD_NEIMB | Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1 | 35 | 276 | 6.0E-14 |
| sp|P59831|RLUA_HAEDU | Ribosomal large subunit pseudouridine synthase A OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rluA PE=3 SV=1 | 105 | 273 | 7.0E-14 |
| sp|P33640|RLUD_PSEAE | Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rluD PE=3 SV=2 | 39 | 273 | 9.0E-14 |
| sp|P44445|RLUD_HAEIN | Ribosomal large subunit pseudouridine synthase D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluD PE=3 SV=1 | 38 | 272 | 1.0E-13 |
| sp|O50310|Y723_CHLP8 | Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723 PE=3 SV=1 | 61 | 272 | 1.0E-13 |
| sp|Q87S65|RLUD_VIBPA | Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluD PE=3 SV=1 | 30 | 273 | 1.0E-13 |
| sp|Q9CNF3|TRUC_PASMU | tRNA pseudouridine synthase C OS=Pasteurella multocida (strain Pm70) GN=truC PE=3 SV=1 | 101 | 274 | 2.0E-13 |
| sp|Q8DEV0|RLUD_VIBVU | Ribosomal large subunit pseudouridine synthase D OS=Vibrio vulnificus (strain CMCP6) GN=rluD PE=3 SV=1 | 30 | 273 | 3.0E-13 |
| sp|P59838|RLUD_BLOFL | Ribosomal large subunit pseudouridine synthase D OS=Blochmannia floridanus GN=rluD PE=3 SV=1 | 110 | 272 | 3.0E-13 |
| sp|Q8ZH72|TRUC_YERPE | tRNA pseudouridine synthase C OS=Yersinia pestis GN=truC PE=3 SV=1 | 102 | 276 | 4.0E-13 |
| sp|P33643|RLUD_ECOLI | Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli (strain K12) GN=rluD PE=1 SV=4 | 38 | 272 | 4.0E-13 |
| sp|P65835|RLUD_SHIFL | Ribosomal large subunit pseudouridine synthase D OS=Shigella flexneri GN=rluD PE=3 SV=2 | 38 | 272 | 6.0E-13 |
| sp|P65834|RLUD_ECOL6 | Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD PE=3 SV=2 | 38 | 272 | 6.0E-13 |
| sp|Q8X9F0|RLUD_ECO57 | Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O157:H7 GN=rluD PE=3 SV=3 | 38 | 272 | 8.0E-13 |
| sp|P75485|Y292_MYCPN | Uncharacterized RNA pseudouridine synthase MG209 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_292 PE=3 SV=1 | 65 | 272 | 1.0E-12 |
| sp|P44782|RLUA_HAEIN | Ribosomal large subunit pseudouridine synthase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluA PE=3 SV=1 | 102 | 274 | 1.0E-12 |
| sp|Q8ZBV7|RLUD_YERPE | Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis GN=rluD PE=3 SV=1 | 38 | 272 | 2.0E-12 |
| sp|P47451|Y209_MYCGE | Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG209 PE=3 SV=1 | 110 | 272 | 2.0E-12 |
| sp|P54604|YHCT_BACSU | Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus subtilis (strain 168) GN=yhcT PE=3 SV=2 | 69 | 272 | 2.0E-12 |
| sp|Q47417|TRUC_PECCC | tRNA pseudouridine synthase C OS=Pectobacterium carotovorum subsp. carotovorum GN=truC PE=3 SV=1 | 102 | 276 | 3.0E-12 |
| sp|Q9KP71|RLUA_VIBCH | Ribosomal large subunit pseudouridine synthase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rluA PE=3 SV=1 | 151 | 273 | 4.0E-12 |
| sp|P44197|TRUC_HAEIN | tRNA pseudouridine synthase C OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=truC PE=3 SV=2 | 102 | 274 | 6.0E-12 |
| sp|P43930|Y042_HAEIN | Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0042 PE=3 SV=1 | 112 | 314 | 7.0E-12 |
| sp|P57481|RLUD_BUCAI | Ribosomal large subunit pseudouridine synthase D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=rluD PE=3 SV=1 | 39 | 277 | 1.0E-11 |
| sp|Q8K9E9|RLUD_BUCAP | Ribosomal large subunit pseudouridine synthase D OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=rluD PE=3 SV=1 | 35 | 272 | 1.0E-11 |
| sp|P70870|RLUD_BORBU | Ribosomal large subunit pseudouridine synthase D OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rluD PE=3 SV=2 | 102 | 272 | 3.0E-11 |
| sp|P0AA42|TRUC_SHIFL | tRNA pseudouridine synthase C OS=Shigella flexneri GN=truC PE=3 SV=1 | 102 | 276 | 3.0E-11 |
| sp|P0AA41|TRUC_ECOLI | tRNA pseudouridine synthase C OS=Escherichia coli (strain K12) GN=truC PE=1 SV=1 | 102 | 276 | 3.0E-11 |
| sp|Q8DBG5|TRUC_VIBVU | tRNA pseudouridine synthase C OS=Vibrio vulnificus (strain CMCP6) GN=truC PE=3 SV=1 | 113 | 276 | 3.0E-11 |
| sp|Q8X6T6|TRUC_ECO57 | tRNA pseudouridine synthase C OS=Escherichia coli O157:H7 GN=truC PE=3 SV=1 | 102 | 276 | 3.0E-11 |
| sp|Q8ZMD5|TRUC_SALTY | tRNA pseudouridine synthase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=truC PE=3 SV=1 | 113 | 276 | 4.0E-11 |
| sp|Q9L7A7|RLUD_HAEDU | Ribosomal large subunit pseudouridine synthase D OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rluD PE=3 SV=2 | 37 | 273 | 5.0E-11 |
| sp|Q87MD4|TRUC_VIBPA | tRNA pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=truC PE=3 SV=1 | 113 | 269 | 6.0E-11 |
| sp|Q8FEF9|TRUC_ECOL6 | tRNA pseudouridine synthase C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=truC PE=3 SV=1 | 102 | 276 | 6.0E-11 |
| sp|Q8Z439|TRUC_SALTI | tRNA pseudouridine synthase C OS=Salmonella typhi GN=truC PE=3 SV=1 | 113 | 276 | 7.0E-11 |
| sp|P65836|RLUD_SALTY | Ribosomal large subunit pseudouridine synthase D OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rluD PE=1 SV=2 | 38 | 272 | 2.0E-10 |
| sp|P65837|RLUD_SALTI | Ribosomal large subunit pseudouridine synthase D OS=Salmonella typhi GN=rluD PE=3 SV=2 | 38 | 272 | 2.0E-10 |
| sp|Q9KTL4|TRUC_VIBCH | tRNA pseudouridine synthase C OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=truC PE=3 SV=1 | 102 | 295 | 2.0E-10 |
| sp|Q87AR7|RLUD_XYLFT | Ribosomal large subunit pseudouridine synthase D OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rluD PE=3 SV=1 | 39 | 288 | 4.0E-10 |
| sp|P0A5T3|Y1567_MYCBO | Uncharacterized RNA pseudouridine synthase Mb1567 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1567 PE=3 SV=1 | 96 | 273 | 8.0E-10 |
| sp|P9WHQ3|Y1540_MYCTU | Uncharacterized RNA pseudouridine synthase Rv1540 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1540 PE=1 SV=1 | 96 | 273 | 8.0E-10 |
| sp|P9WHQ2|Y1540_MYCTO | Uncharacterized RNA pseudouridine synthase MT1592 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1592 PE=3 SV=1 | 96 | 273 | 8.0E-10 |
| sp|P74346|Y1629_SYNY3 | Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1 | 38 | 273 | 1.0E-09 |
| sp|Q08C69|RUSD1_DANRE | RNA pseudouridylate synthase domain-containing protein 1 OS=Danio rerio GN=rpusd1 PE=2 SV=1 | 96 | 273 | 1.0E-09 |
| sp|Q9PET9|RLUD_XYLFA | Ribosomal large subunit pseudouridine synthase D OS=Xylella fastidiosa (strain 9a5c) GN=rluD PE=3 SV=1 | 39 | 272 | 1.0E-09 |
| sp|Q9ZKP5|Y956_HELPJ | Uncharacterized RNA pseudouridine synthase jhp_0890 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_0890 PE=3 SV=1 | 151 | 273 | 3.0E-09 |
| sp|Q9ZDR7|RLUC_RICPR | Ribosomal large subunit pseudouridine synthase C OS=Rickettsia prowazekii (strain Madrid E) GN=rluC PE=3 SV=1 | 61 | 278 | 3.0E-09 |
| sp|Q89AD9|RLUD_BUCBP | Ribosomal large subunit pseudouridine synthase D OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rluD PE=3 SV=1 | 34 | 283 | 4.0E-09 |
| sp|Q68XB2|RLUC_RICTY | Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3 SV=1 | 61 | 278 | 5.0E-09 |
| sp|Q4QQT0|RUSD4_RAT | RNA pseudouridylate synthase domain-containing protein 4 OS=Rattus norvegicus GN=Rpusd4 PE=2 SV=1 | 85 | 305 | 6.0E-09 |
| sp|Q9CWX4|RUSD4_MOUSE | RNA pseudouridylate synthase domain-containing protein 4 OS=Mus musculus GN=Rpusd4 PE=2 SV=1 | 85 | 305 | 9.0E-09 |
| sp|P47610|Y370_MYCGE | Uncharacterized RNA pseudouridine synthase MG370 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG370 PE=3 SV=1 | 102 | 281 | 9.0E-09 |
| sp|Q3ECD0|PUS2_ARATH | RNA pseudouridine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g76050 PE=2 SV=1 | 46 | 276 | 9.0E-09 |
| sp|O25610|Y956_HELPY | Uncharacterized RNA pseudouridine synthase HP_0956 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0956 PE=3 SV=1 | 151 | 273 | 9.0E-09 |
| sp|Q5Z8P2|PUS2_ORYSJ | RNA pseudouridine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0717400 PE=2 SV=1 | 61 | 276 | 1.0E-07 |
| sp|Q96CM3|RUSD4_HUMAN | RNA pseudouridylate synthase domain-containing protein 4 OS=Homo sapiens GN=RPUSD4 PE=1 SV=1 | 85 | 305 | 1.0E-07 |
| sp|Q28C59|RUSD4_XENTR | RNA pseudouridylate synthase domain-containing protein 4 OS=Xenopus tropicalis GN=rpusd4 PE=2 SV=1 | 112 | 279 | 2.0E-07 |
| sp|Q1RJX7|RLUC_RICBR | Ribosomal large subunit pseudouridine synthase C OS=Rickettsia bellii (strain RML369-C) GN=rluC PE=3 SV=1 | 151 | 278 | 2.0E-07 |
| sp|Q9UJJ7|RUSD1_HUMAN | RNA pseudouridylate synthase domain-containing protein 1 OS=Homo sapiens GN=RPUSD1 PE=1 SV=1 | 96 | 275 | 6.0E-07 |
| sp|Q4UKQ3|RLUC_RICFE | Ribosomal large subunit pseudouridine synthase C OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3 SV=1 | 61 | 278 | 1.0E-06 |
| sp|Q8VCZ8|RUSD1_MOUSE | RNA pseudouridylate synthase domain-containing protein 1 OS=Mus musculus GN=Rpusd1 PE=2 SV=1 | 96 | 274 | 1.0E-06 |
| sp|P75230|Y548_MYCPN | Uncharacterized RNA pseudouridine synthase MG370 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_548 PE=3 SV=1 | 62 | 281 | 3.0E-06 |
| sp|Q92IS6|RLUC_RICCN | Ribosomal large subunit pseudouridine synthase C OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3 SV=1 | 61 | 278 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009982 | pseudouridine synthase activity | Yes |
| GO:0001522 | pseudouridine synthesis | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0009451 | RNA modification | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0016866 | intramolecular transferase activity | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 49 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|048600 MADTGRNQTPNAILSPPGLKKIPPYWYPYTTMAKMRWLGRELLEVVSTEFRDRSMEYYRYALESGMTTVNGKIAK PDTVLKDGDRIENVVHRHEPPVSSRSVKILHRDTEREFIIVDKPGSIPVHASGRYYKNTLIEILVNDFGFSKVYP VNRLDRLTSGLMIIPLSSDRARQLTSEFTAGTVQKEYVARCKGRFPDGEIVCEEPLLTVDRQMGLNIVHPEGKHA KTIFNLIRYDASTDSSVVRCRPLTGRSHQIRVHLQFLGHPIANDPVYSETRIWGENVGKGGIDITPSEERSAPAP PDHLQNEVEVQGNPESLCKDPPNGTAAESIPNKLLPRETGEDIGMGSPVPLSKEAVQVITRLRHMKDEDEDWSRW RDVIFRAKGALSPRNLVVKAPPPQNRRKRGGKGEFTAGGNSITISSRSATPLGLDTPSPEATSPPIVTPTAVEQP PQLTTEEALKKISQMEPAPDPDTTIQSENLYCPDCYLPLHPDPKPEKLYIFLHALKYSTSLGAFETEMPEWSAEG YEWDQT* |
| Coding | >Agabi119p4|048600 ATGGCAGACACTGGCAGAAATCAGACTCCAAACGCGATACTGTCCCCTCCGGGACTCAAAAAAATACCACCGTAC TGGTATCCATATACCACCATGGCTAAGATGCGTTGGCTGGGTCGCGAGCTGCTTGAGGTCGTCTCGACTGAGTTC CGGGACAGGTCTATGGAATACTACCGATACGCATTAGAATCTGGTATGACGACTGTAAATGGCAAGATAGCTAAG CCGGACACTGTGCTGAAAGACGGTGACCGGATAGAAAATGTCGTGCATCGGCATGAACCACCTGTATCTTCGCGT TCTGTCAAAATCCTTCACCGCGATACCGAGCGCGAATTCATAATAGTTGACAAACCAGGCAGCATCCCCGTCCAT GCCTCAGGAAGATACTACAAGAACACTTTGATTGAAATCTTAGTTAATGATTTTGGTTTCTCCAAGGTCTATCCA GTTAACAGGTTAGATCGCTTGACATCCGGGTTGATGATCATTCCCTTGTCTTCTGATCGTGCCCGCCAATTGACG TCCGAATTCACCGCTGGTACTGTTCAAAAGGAGTATGTTGCACGTTGTAAAGGACGCTTTCCTGATGGGGAGATT GTGTGCGAGGAGCCCTTACTTACTGTTGATAGGCAGATGGGGTTGAACATTGTTCATCCAGAGGGAAAGCACGCT AAAACCATCTTCAATCTCATTCGCTATGATGCCAGTACCGATAGCAGCGTGGTTCGATGTCGACCATTGACCGGA CGTTCACATCAAATCCGCGTCCACCTCCAATTCTTGGGTCATCCCATCGCCAATGACCCTGTGTATTCAGAAACA CGAATTTGGGGCGAAAATGTGGGCAAAGGTGGGATTGACATAACTCCAAGCGAAGAAAGATCAGCGCCCGCTCCA CCTGATCATCTACAAAACGAAGTGGAAGTCCAAGGAAATCCTGAATCGTTATGTAAAGATCCACCGAATGGTACT GCAGCTGAATCTATCCCAAACAAGCTACTGCCTCGTGAGACCGGCGAAGATATTGGCATGGGCTCGCCTGTGCCT CTTTCCAAAGAGGCTGTTCAAGTGATTACGCGTCTTCGGCATATGAAAGACGAAGATGAAGATTGGAGTAGATGG AGAGATGTCATCTTCCGTGCTAAAGGTGCTTTATCTCCACGAAATTTGGTCGTCAAGGCGCCTCCGCCGCAGAAT CGGAGGAAGAGAGGGGGAAAGGGAGAGTTCACTGCCGGCGGTAACAGCATCACCATCTCATCACGGTCTGCAACC CCTTTGGGTTTGGACACACCATCACCGGAAGCGACTTCCCCTCCGATTGTGACTCCGACCGCAGTTGAACAGCCG CCACAACTTACAACTGAAGAAGCGCTAAAGAAGATCTCGCAAATGGAACCAGCTCCAGATCCCGACACTACGATC CAGTCGGAAAATTTGTACTGCCCCGATTGTTATTTGCCCCTTCATCCCGACCCAAAACCCGAAAAACTGTATATC TTCCTCCATGCGTTGAAGTATTCGACGAGTTTGGGAGCTTTTGAGACGGAAATGCCTGAGTGGTCCGCGGAGGGT TATGAGTGGGATCAGACATGA |
| Transcript | >Agabi119p4|048600 ATGGCAGACACTGGCAGAAATCAGACTCCAAACGCGATACTGTCCCCTCCGGGACTCAAAAAAATACCACCGTAC TGGTATCCATATACCACCATGGCTAAGATGCGTTGGCTGGGTCGCGAGCTGCTTGAGGTCGTCTCGACTGAGTTC CGGGACAGGTCTATGGAATACTACCGATACGCATTAGAATCTGGTATGACGACTGTAAATGGCAAGATAGCTAAG CCGGACACTGTGCTGAAAGACGGTGACCGGATAGAAAATGTCGTGCATCGGCATGAACCACCTGTATCTTCGCGT TCTGTCAAAATCCTTCACCGCGATACCGAGCGCGAATTCATAATAGTTGACAAACCAGGCAGCATCCCCGTCCAT GCCTCAGGAAGATACTACAAGAACACTTTGATTGAAATCTTAGTTAATGATTTTGGTTTCTCCAAGGTCTATCCA GTTAACAGGTTAGATCGCTTGACATCCGGGTTGATGATCATTCCCTTGTCTTCTGATCGTGCCCGCCAATTGACG TCCGAATTCACCGCTGGTACTGTTCAAAAGGAGTATGTTGCACGTTGTAAAGGACGCTTTCCTGATGGGGAGATT GTGTGCGAGGAGCCCTTACTTACTGTTGATAGGCAGATGGGGTTGAACATTGTTCATCCAGAGGGAAAGCACGCT AAAACCATCTTCAATCTCATTCGCTATGATGCCAGTACCGATAGCAGCGTGGTTCGATGTCGACCATTGACCGGA CGTTCACATCAAATCCGCGTCCACCTCCAATTCTTGGGTCATCCCATCGCCAATGACCCTGTGTATTCAGAAACA CGAATTTGGGGCGAAAATGTGGGCAAAGGTGGGATTGACATAACTCCAAGCGAAGAAAGATCAGCGCCCGCTCCA CCTGATCATCTACAAAACGAAGTGGAAGTCCAAGGAAATCCTGAATCGTTATGTAAAGATCCACCGAATGGTACT GCAGCTGAATCTATCCCAAACAAGCTACTGCCTCGTGAGACCGGCGAAGATATTGGCATGGGCTCGCCTGTGCCT CTTTCCAAAGAGGCTGTTCAAGTGATTACGCGTCTTCGGCATATGAAAGACGAAGATGAAGATTGGAGTAGATGG AGAGATGTCATCTTCCGTGCTAAAGGTGCTTTATCTCCACGAAATTTGGTCGTCAAGGCGCCTCCGCCGCAGAAT CGGAGGAAGAGAGGGGGAAAGGGAGAGTTCACTGCCGGCGGTAACAGCATCACCATCTCATCACGGTCTGCAACC CCTTTGGGTTTGGACACACCATCACCGGAAGCGACTTCCCCTCCGATTGTGACTCCGACCGCAGTTGAACAGCCG CCACAACTTACAACTGAAGAAGCGCTAAAGAAGATCTCGCAAATGGAACCAGCTCCAGATCCCGACACTACGATC CAGTCGGAAAATTTGTACTGCCCCGATTGTTATTTGCCCCTTCATCCCGACCCAAAACCCGAAAAACTGTATATC TTCCTCCATGCGTTGAAGTATTCGACGAGTTTGGGAGCTTTTGAGACGGAAATGCCTGAGTGGTCCGCGGAGGGT TATGAGTGGGATCAGACATGA |
| Gene | >Agabi119p4|048600 ATGGCAGACACTGGCAGAAATCAGACTCCAAACGCGATACTGTCCCCTCCGGGACTCAAAAAAATACCACCGTAC TGGTATCCATATACCACCATGGCTAAGATGCGTTGGCTGGGTCGCGAGCTGCTTGAGGTCGTCTCGACTGAGTTC CGGGACAGGTCTATGGAATACTACGTGCGCCTCTTGCAAATGATTGTGATAAGCTGCTGACAGTACACGTATATA CAGCGATACGCATTAGAATCTGGTATGACGACTGTAAATGGCAAGATAGCTAAGCCGGACACTGTGCTGAAAGAC GGTGACCGGATAGAGTAGGAAACTTTTTCGCCGCAGTGTCGCCCTAACCTGATGATCACTAGAAATGTCGTGCAT CGGCATGAACCACCTGTATCTTCGCGTTCTGTCAAAATCCTTCACCGCGATACCGAGCGCGAATTCATAATAGTT GACAAACCAGGCAGCATCGTTCGTTCGTTATCGCTCCTCAAGTCAAACAAGTTCGACTCTAACCAAGATTCATTT TGCACTCTTACTTAGCCCGTCCATGCCTCAGGAAGATACTACAAGAACACTTTGATTGAAATCTTAGTTAATGAT TTTGGTTTCTCCAAGGTCTATCGTATGTCAGTTATCACCTTGAGTGCAATTATTGCTGAAATGGGCAAATAGCAG TTAACAGGTTAGATCGCTTGACATCCGGGTTGATGATCATTCCCTTGTCTTCTGATCGTGCCCGCCAATTGACGT CCGAATTCACCGCTGGTACTGTTCAAAAGGAGTATGTTGCACGTTGTAAAGGACGCTTTCCTGAGTCAGTTCCCT CTTCATTCTTTAATATGTTTCTCAACATGACTACTTTTGTTCCTGTGATTCAGTGGGGAGATTGTGTGCGAGGAG CCCTTACTTACTGTTGATAGGCAGATGGGGTTGAACATTGTTCATCCAGAGGGAAAGGTGTGTCTCCACTCCCTT CAGATTTCCGATTTAAACGCGCAACTCATGGTTCTTCCGGATAGCACGCTAAAACCATCTTCAATCTCATTCGCT ATGATGCCAGTACCGATAGCAGCGTGGTTCGATGCACGTTTTTTTGTTAAAAAACACATGCCAAATCACTAATTC TGCAATACAAAAACAGGTCGACCATTGACCGGACGTTGTGCGTACATTAGAAGTCTTCTGTATACAATAGATCTG AGTTATTGTCCCTTTCCGCAGCACATCAAATCCGCGTCCACCTCCAATTCTTGGGTCATCCCATCGCCAATGACC CTGTGTATTCAGAAACACGAATTTGGGTATGGTTTCTTCGTGCCTTCTTCTATTATCACCACCTCACCTCATGGT TTTAGGGCGAAAATGTGGGCAAAGGTGGGATTGACATAACTCCAAGCGAAGAAAGATCAGCGCCCGCTCCACCTG ATCATCTACAAAACGAAGTGGAAGTCCAAGGAAATCCTGAATCGTTATGTAAAGATCCACCGAATGGTACTGCAG CTGAATCTATCCCAAACAAGCTACTGCCTCGTGAGACCGGCGAAGATATTGGCATGGGCTCGCCTGTGCCTCTTT CCAAAGAGGCTGTTCAAGTGATTACGCGTCTTCGGCATATGAAAGTATGTCATCGCGTATCTTTTTTTAAGATGT TGACATATCCTGACTACTTTTAGGACGAAGATGAAGATTGGAGTAGATGGAGAGATGTCATCTTCCGTGCTAAAG GTGCTTTATCTCCACGAAATTTGGTCGTCAAGGCGCCTCCGCCGCAGAATCGGAGGAAGAGAGGGGGAAAGGGAG AGTTCACTGCCGGCGGTAACAGCATCACCATCTCATCACGGTCTGCAACCCCTTTGGGTTTGGACACACCATCAC CGGAAGCGACTTCCCCTCCGATTGTGACTCCGACCGCAGTTGAACAGCCGCCACAACTTACAACTGAAGAAGCGC TAAAGAAGATCTCGCAAATGGAACCAGCTCCAGATCCCGACACTACGATCCAGTCGGAAAATTTGTACTGCCCCG ATTGTTATTTGCCCCTTCATCCCGACCCAAAACCCGAAAAACTGTATATCTTCCTCCATGCGTTGAAGTATTCGA CGAGTTTGGGAGCTTTTGAGACGGAAATGCCTGAGTGGTCCGCGGAGGGTTATGAGTGGGATCAGACATGA |