© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|048590 |
| Gene name | |
| Location | scaffold_02:2432748..2433842 |
| Strand | + |
| Gene length (bp) | 1094 |
| Transcript length (bp) | 819 |
| Coding sequence length (bp) | 819 |
| Protein length (aa) | 273 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04889 | Cwf_Cwc_15 | Cwf15/Cwc15 cell cycle control protein | 1.1E-83 | 1 | 272 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5B020|CWC15_EMENI | Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc15 PE=3 SV=1 | 1 | 272 | 1.0E-34 |
| sp|O45766|CWC15_CAEEL | Protein CWC15 homolog OS=Caenorhabditis elegans GN=T10C6.5 PE=3 SV=1 | 1 | 272 | 5.0E-33 |
| sp|P78794|CWC15_SCHPO | Pre-mRNA-splicing factor cwf15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf15 PE=1 SV=2 | 1 | 271 | 2.0E-30 |
| sp|Q6NUB2|CW15A_XENLA | Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1 | 162 | 272 | 6.0E-27 |
| sp|Q0VFP5|CWC15_XENTR | Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc15 PE=2 SV=1 | 165 | 272 | 6.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5B020|CWC15_EMENI | Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc15 PE=3 SV=1 | 1 | 272 | 1.0E-34 |
| sp|O45766|CWC15_CAEEL | Protein CWC15 homolog OS=Caenorhabditis elegans GN=T10C6.5 PE=3 SV=1 | 1 | 272 | 5.0E-33 |
| sp|P78794|CWC15_SCHPO | Pre-mRNA-splicing factor cwf15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf15 PE=1 SV=2 | 1 | 271 | 2.0E-30 |
| sp|Q6NUB2|CW15A_XENLA | Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1 | 162 | 272 | 6.0E-27 |
| sp|Q0VFP5|CWC15_XENTR | Protein CWC15 homolog OS=Xenopus tropicalis GN=cwc15 PE=2 SV=1 | 165 | 272 | 6.0E-25 |
| sp|Q6DKE6|CW15B_XENLA | Protein CWC15 homolog B OS=Xenopus laevis GN=cwc15-b PE=2 SV=1 | 165 | 272 | 2.0E-24 |
| sp|Q9V3B6|CWC15_DROME | Protein CWC15 homolog OS=Drosophila melanogaster GN=c12.1 PE=2 SV=1 | 163 | 272 | 1.0E-23 |
| sp|Q9JHS9|CWC15_MOUSE | Spliceosome-associated protein CWC15 homolog OS=Mus musculus GN=Cwc15 PE=1 SV=1 | 162 | 272 | 2.0E-23 |
| sp|Q5BJP2|CWC15_RAT | Spliceosome-associated protein CWC15 homolog OS=Rattus norvegicus GN=Cwc15 PE=1 SV=1 | 162 | 272 | 2.0E-23 |
| sp|Q2KJD3|CWC15_BOVIN | Spliceosome-associated protein CWC15 homolog OS=Bos taurus GN=CWC15 PE=2 SV=1 | 162 | 272 | 2.0E-23 |
| sp|Q5RE65|CWC15_PONAB | Spliceosome-associated protein CWC15 homolog OS=Pongo abelii GN=CWC15 PE=2 SV=1 | 162 | 272 | 2.0E-23 |
| sp|Q9P013|CWC15_HUMAN | Spliceosome-associated protein CWC15 homolog OS=Homo sapiens GN=CWC15 PE=1 SV=2 | 162 | 272 | 2.0E-23 |
| sp|Q6IQU4|CWC15_DANRE | Protein CWC15 homolog OS=Danio rerio GN=cwc15 PE=2 SV=1 | 162 | 272 | 2.0E-18 |
| sp|Q6C0E6|CWC15_YARLI | Pre-mRNA-splicing factor CWC15 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC15 PE=3 SV=1 | 1 | 272 | 2.0E-18 |
| sp|Q6BP48|CWC15_DEBHA | Pre-mRNA-splicing factor CWC15 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC15 PE=3 SV=2 | 1 | 272 | 3.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000398 | mRNA splicing, via spliceosome | Yes |
| GO:0005681 | spliceosomal complex | Yes |
| GO:0009987 | cellular process | No |
| GO:0005575 | cellular_component | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006397 | mRNA processing | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008380 | RNA splicing | No |
| GO:1990904 | ribonucleoprotein complex | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0000375 | RNA splicing, via transesterification reactions | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|048590 MSTAHRPTWDPAQARTVVGGSRQFSVRDMAAHTKLKFRQVGQTSASEVKKRDLRAELFLAEAEAKNKKRKAEGKP PLPIEGISASSETQAMAEGGGDEESNKRRKLLQEALDLDKDDDDDDDDEEGEKGEKVGDNGSASKKGAADESSEE EEEDSDDEEDETAELLRELDKIKRERAEDKARKEQEQSDQDAATREEHIATANPLLNLAAALGQTPAGLNTTAPG TFSVKKRWDDDLVFKNQSMNDGGKPQHFVNDLLRTEFHKKFMSKFIK* |
| Coding | >Agabi119p4|048590 ATGTCGACAGCGCATAGACCGACATGGGATCCAGCGCAGGCTAGGACTGTCGTGGGTGGCTCACGACAATTCTCT GTCCGTGATATGGCCGCCCATACAAAACTTAAATTCCGTCAAGTTGGTCAAACGTCTGCATCGGAAGTCAAGAAA CGTGATCTTCGAGCTGAATTGTTTTTGGCGGAAGCGGAGGCGAAGAATAAGAAACGAAAGGCGGAGGGGAAGCCA CCGTTGCCTATCGAGGGTATTTCTGCTTCTTCTGAAACGCAGGCGATGGCGGAAGGTGGTGGTGATGAGGAGTCG AATAAGAGGAGAAAGTTGTTACAAGAGGCGTTGGATTTGGATAAAGATGATGATGATGATGATGATGACGAGGAA GGGGAGAAAGGGGAGAAAGTCGGTGATAATGGAAGTGCGTCTAAGAAGGGCGCAGCAGATGAAAGCAGTGAAGAA GAGGAAGAGGACTCTGATGACGAAGAAGACGAAACCGCTGAATTGTTACGTGAACTCGATAAAATAAAACGAGAA CGAGCAGAAGACAAAGCAAGAAAAGAGCAAGAGCAATCAGATCAAGATGCAGCTACAAGAGAAGAACATATAGCT ACAGCGAATCCATTATTGAATCTCGCTGCTGCGCTTGGTCAAACGCCTGCTGGATTGAATACGACAGCGCCTGGA ACTTTCTCTGTGAAGAAACGTTGGGATGATGATCTTGTATTTAAGAATCAGTCGATGAATGACGGTGGAAAACCT CAACACTTTGTCAATGACCTACTTCGAACAGAGTTTCACAAAAAGTTCATGTCGAAATTTATAAAGTAA |
| Transcript | >Agabi119p4|048590 ATGTCGACAGCGCATAGACCGACATGGGATCCAGCGCAGGCTAGGACTGTCGTGGGTGGCTCACGACAATTCTCT GTCCGTGATATGGCCGCCCATACAAAACTTAAATTCCGTCAAGTTGGTCAAACGTCTGCATCGGAAGTCAAGAAA CGTGATCTTCGAGCTGAATTGTTTTTGGCGGAAGCGGAGGCGAAGAATAAGAAACGAAAGGCGGAGGGGAAGCCA CCGTTGCCTATCGAGGGTATTTCTGCTTCTTCTGAAACGCAGGCGATGGCGGAAGGTGGTGGTGATGAGGAGTCG AATAAGAGGAGAAAGTTGTTACAAGAGGCGTTGGATTTGGATAAAGATGATGATGATGATGATGATGACGAGGAA GGGGAGAAAGGGGAGAAAGTCGGTGATAATGGAAGTGCGTCTAAGAAGGGCGCAGCAGATGAAAGCAGTGAAGAA GAGGAAGAGGACTCTGATGACGAAGAAGACGAAACCGCTGAATTGTTACGTGAACTCGATAAAATAAAACGAGAA CGAGCAGAAGACAAAGCAAGAAAAGAGCAAGAGCAATCAGATCAAGATGCAGCTACAAGAGAAGAACATATAGCT ACAGCGAATCCATTATTGAATCTCGCTGCTGCGCTTGGTCAAACGCCTGCTGGATTGAATACGACAGCGCCTGGA ACTTTCTCTGTGAAGAAACGTTGGGATGATGATCTTGTATTTAAGAATCAGTCGATGAATGACGGTGGAAAACCT CAACACTTTGTCAATGACCTACTTCGAACAGAGTTTCACAAAAAGTTCATGTCGAAATTTATAAAGTAA |
| Gene | >Agabi119p4|048590 ATGTCGACAGCGCATAGACCGACATGGGATCCAGCGCAGGCTAGGACTGTCGTGGGTGGCTCACGACAATTCTCT GTCCGTGATATGGCCGCCCATACAAAACTTAAATTCCGGTATGTAACCCCGAATTAAAATATTCAATTTTCATAT TTATCAAACTCTCTAATCTAGTCAAGTTGGTCAAACGTCTGCATCGGAAGTCAAGAAACGTGATCTTCGAGCTGA ATTGTTTTTGGCGGAAGCGGAGGCGAAGAATAAGAAACGAAAGGCGGAGGGGAAGCCACCGTTGCCTATCGAGGG TATTTCTGCTTCTTCTGAAACGCAGGCGATGGCGGAAGGTGGTGGTGATGAGGAGTCGAATAAGAGGAGAAAGTT GTTACAAGAGGCGTTGGATTTGGATAAAGATGATGATGATGATGATGATGACGAGGAAGGGGAGAAAGGGGAGAA AGTCGGTGATAATGGAAGTGCGTCTAAGAAGGGCGCAGCAGATGAAAGGTGCGTTACTCATTCTATCTAATATCA CCAACCGACTTAAATTTATCTCAGCAGTGAAGAAGAGGAAGAGGACTCTGATGACGAAGAAGACGAAACCGCTGA ATTGTTACGTGAACTCGATAAAATAAAACGAGAACGAGCAGAAGACAAAGCAAGAAAAGAGCAAGAGCAATCAGA TCAAGATGCAGCTACAAGAGAAGAACATATAGCTACAGCGAATCCATTATTGAATCTCGCTGCTGCGCTTGGTCA AACGCCTGCTGGATTGAATACGACAGCGCCTGGAACTTTCTCTGTGAAGAAACGTTGGGATGATGGTCAGCTTTG CTGTTTTTGAGTTTTCTTTTGACGTGGTTGAAGTTAATGCTGCGGATTATAGATCTTGTATTTAAGAATCAGTCG ATGAATGACGGTGGAAAACCTCAACACTTTGTCAATGACCTACTTCGAACAGAGTTTCACAAGTATGTTGATACA ATTCCATCCCTTATATATTGACTGACGGTGTCTTTGCAGAAAGTTCATGTCGAAATTTATAAAGGTCTGTCCCAC TGTTTATAATCCCTTGACTTTGTCTGAGAATTCTCGTCTAGTAA |