Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|048220
Gene name
Locationscaffold_02:2333625..2334009
Strand-
Gene length (bp)384
Transcript length (bp)273
Coding sequence length (bp)273
Protein length (aa) 91

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00240 ubiquitin Ubiquitin family 1.7E-05 30 89
PF14560 Ubiquitin_2 Ubiquitin-like domain 1.8E-04 34 87

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O94650|HUB1_SCHPO Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hub1 PE=1 SV=1 22 90 5.0E-35
sp|Q9V998|UBL5_DROME Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1 22 90 4.0E-34
sp|Q791B0|UBL5_PSAOB Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1 22 90 4.0E-34
sp|Q9EPV8|UBL5_MOUSE Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1 22 90 4.0E-34
sp|Q6EGX7|UBL5_MESAU Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1 22 90 4.0E-34
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Swissprot ID Swissprot Description Start End E-value
sp|O94650|HUB1_SCHPO Ubiquitin-like modifier hub1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hub1 PE=1 SV=1 22 90 5.0E-35
sp|Q9V998|UBL5_DROME Ubiquitin-like protein 5 OS=Drosophila melanogaster GN=ubl PE=3 SV=1 22 90 4.0E-34
sp|Q791B0|UBL5_PSAOB Ubiquitin-like protein 5 OS=Psammomys obesus GN=UBL5 PE=3 SV=1 22 90 4.0E-34
sp|Q9EPV8|UBL5_MOUSE Ubiquitin-like protein 5 OS=Mus musculus GN=Ubl5 PE=1 SV=1 22 90 4.0E-34
sp|Q6EGX7|UBL5_MESAU Ubiquitin-like protein 5 OS=Mesocricetus auratus GN=UBL5 PE=3 SV=1 22 90 4.0E-34
sp|Q9BZL1|UBL5_HUMAN Ubiquitin-like protein 5 OS=Homo sapiens GN=UBL5 PE=1 SV=1 22 90 4.0E-34
sp|Q3T0Z3|UBL5_BOVIN Ubiquitin-like protein 5 OS=Bos taurus GN=UBL5 PE=3 SV=1 22 90 4.0E-34
sp|P91302|UBL5_CAEEL Ubiquitin-like protein 5 OS=Caenorhabditis elegans GN=ubl-5 PE=3 SV=1 22 90 1.0E-33
sp|Q7SXF2|UBL5_DANRE Ubiquitin-like protein 5 OS=Danio rerio GN=ubl5 PE=3 SV=1 22 90 3.0E-33
sp|Q9FGZ9|UBL5_ARATH Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=3 SV=1 22 90 5.0E-33
sp|Q6BUP7|HUB1_DEBHA Ubiquitin-like modifier HUB1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=HUB1 PE=4 SV=1 22 90 5.0E-28
sp|Q6CU12|HUB1_KLULA Ubiquitin-like modifier HUB1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=HUB1 PE=3 SV=1 22 90 4.0E-23
sp|Q6FIX7|HUB1_CANGA Ubiquitin-like modifier HUB1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HUB1 PE=3 SV=1 22 90 4.0E-23
sp|Q6Q546|HUB1_YEAST Ubiquitin-like modifier HUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HUB1 PE=1 SV=2 22 90 7.0E-23
sp|Q756X3|HUB1_ASHGO Ubiquitin-like modifier HUB1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HUB1 PE=3 SV=1 22 90 4.0E-21
sp|Q54Q03|UBL5_DICDI Ubiquitin-like protein 5 OS=Dictyostelium discoideum GN=ubl5 PE=3 SV=2 22 90 1.0E-19
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

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SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|048220
MALIEESFSVLACPHPLTICSQIIANDRLGRKVRVKCSPDDTVGDLKKLIAAQTGTDSKKIVLKKWYTIYKDHIT
LSDYEIHDGMSLEMY*
Coding >Agabi119p4|048220
ATGGCTCTCATCGAGGAAAGCTTCTCAGTGTTAGCGTGCCCGCATCCGTTGACGATTTGTTCGCAGATTATCGCA
AATGACCGTCTGGGTCGAAAAGTGCGAGTTAAATGCAGTCCCGACGACACGGTAGGAGATTTGAAAAAGTTGATT
GCTGCGCAGACGGGGACAGACTCCAAGAAGATTGTGTTGAAGAAATGGTATACGATCTACAAGGACCACATCACG
CTGTCCGACTACGAGATTCACGACGGAATGAGTCTGGAGATGTACTGA
Transcript >Agabi119p4|048220
ATGGCTCTCATCGAGGAAAGCTTCTCAGTGTTAGCGTGCCCGCATCCGTTGACGATTTGTTCGCAGATTATCGCA
AATGACCGTCTGGGTCGAAAAGTGCGAGTTAAATGCAGTCCCGACGACACGGTAGGAGATTTGAAAAAGTTGATT
GCTGCGCAGACGGGGACAGACTCCAAGAAGATTGTGTTGAAGAAATGGTATACGATCTACAAGGACCACATCACG
CTGTCCGACTACGAGATTCACGACGGAATGAGTCTGGAGATGTACTGA
Gene >Agabi119p4|048220
ATGGCTCTCATCGAGGAAAGCTTCTCAGTGTTAGCGTGCCCGCATCCGTTGACGATTTGTTCGCAGATTATCGCA
AATGACCGTCTGGGTCGAAAAGGTGAGGCCTCTTCCGTAGACGTCTTATGGTGTCCGCCTTGATGAATCGCCTTG
CAGTGCGAGTTAAATGCAGTCCCGACGACACGGTAGGAGATTTGAAAAAGTTGATTGCTGCGCAGACGGGGACAG
ACTCCAAGAAGATTGTGTTGAAGAAATGGTGAGTGCCGGAGATATGCAGTGGATTATATTGATATATATATGGGG
AGAAACAGGTATACGATCTACAAGGACCACATCACGCTGTCCGACTACGAGATTCACGACGGAATGAGTCTGGAG
ATGTACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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