Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|047620
Gene name
Locationscaffold_02:2169025..2169898
Strand+
Gene length (bp)873
Transcript length (bp)585
Coding sequence length (bp)585
Protein length (aa) 195

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04900 Fcf1 Fcf1 1.3E-36 90 186
PF18477 PIN_9 PIN like domain 2.5E-08 67 175

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 1 193 3.0E-85
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 189 1.0E-82
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Swissprot ID Swissprot Description Start End E-value
sp|Q5RFQ0|FCF1_PONAB rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q9Y324|FCF1_HUMAN rRNA-processing protein FCF1 homolog OS=Homo sapiens GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q32PD0|FCF1_BOVIN rRNA-processing protein FCF1 homolog OS=Bos taurus GN=FCF1 PE=2 SV=1 1 193 7.0E-87
sp|Q9CTH6|FCF1_MOUSE rRNA-processing protein FCF1 homolog OS=Mus musculus GN=Fcf1 PE=2 SV=2 1 193 3.0E-85
sp|Q05498|FCF1_YEAST rRNA-processing protein FCF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF1 PE=1 SV=1 1 189 1.0E-82
sp|O13610|FCF1_SCHPO rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 1 189 3.0E-78
sp|Q55GM5|FCF1_DICDI rRNA-processing protein FCF1 homolog OS=Dictyostelium discoideum GN=fcf1 PE=3 SV=1 18 189 3.0E-72
sp|Q9BRU9|UTP23_HUMAN rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=1 SV=2 54 186 1.0E-13
sp|Q9CX11|UTP23_MOUSE rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1 54 186 1.0E-13
sp|Q08DU1|UTP23_BOVIN rRNA-processing protein UTP23 homolog OS=Bos taurus GN=UTP23 PE=2 SV=1 54 186 2.0E-13
sp|O74862|UTP23_SCHPO rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp23 PE=3 SV=1 64 177 6.0E-13
sp|Q12339|UTP23_YEAST rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP23 PE=1 SV=1 53 194 3.0E-10
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GO

GO Term Description Terminal node
GO:0032040 small-subunit processome Yes
GO:0032991 protein-containing complex No
GO:1990904 ribonucleoprotein complex No
GO:0030684 preribosome No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 45 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|047620
MGKAKKTRKFAQVKRLLNPNDIRLKENKAKQAKKEEEVKEKQVRRVTQVASSLFFAHNTALVPPYRVLIDTNFIN
FSIQNKIELLSGMMDCLFAKCIPCVTDCVIAELEKLGSKYRIALRIARDPRFERLTCSHSGTYADDCLVQRVTSH
KCYIVATCDRELRRRIRQIPGVPLMYIVSRKYAIERLPDQGAPA*
Coding >Agabi119p4|047620
ATGGGAAAGGCAAAGAAGACGAGAAAATTCGCTCAGGTCAAGCGACTGCTTAACCCGAATGACATCCGACTAAAA
GAGAACAAGGCGAAGCAAGCCAAGAAAGAAGAAGAAGTGAAAGAAAAACAAGTCCGTCGGGTGACTCAAGTAGCG
TCCTCGCTCTTTTTTGCCCACAACACTGCTCTAGTCCCCCCATATCGCGTACTGATAGACACCAACTTCATCAAT
TTCAGCATTCAAAACAAAATTGAACTTCTTAGTGGCATGATGGACTGTCTTTTTGCGAAATGTATACCATGTGTT
ACAGACTGTGTCATCGCTGAGCTCGAAAAACTAGGTTCCAAATACCGTATTGCACTTCGAATTGCGCGAGATCCA
AGATTTGAACGCCTCACCTGTTCTCACAGTGGAACTTATGCCGATGACTGCTTAGTCCAGCGCGTAACGTCTCAC
AAATGCTATATCGTCGCAACTTGTGATCGGGAGCTCCGGCGACGTATTCGACAAATCCCAGGCGTCCCGTTAATG
TACATCGTGAGCCGAAAGTATGCGATAGAGAGATTACCGGATCAGGGCGCGCCTGCATGA
Transcript >Agabi119p4|047620
ATGGGAAAGGCAAAGAAGACGAGAAAATTCGCTCAGGTCAAGCGACTGCTTAACCCGAATGACATCCGACTAAAA
GAGAACAAGGCGAAGCAAGCCAAGAAAGAAGAAGAAGTGAAAGAAAAACAAGTCCGTCGGGTGACTCAAGTAGCG
TCCTCGCTCTTTTTTGCCCACAACACTGCTCTAGTCCCCCCATATCGCGTACTGATAGACACCAACTTCATCAAT
TTCAGCATTCAAAACAAAATTGAACTTCTTAGTGGCATGATGGACTGTCTTTTTGCGAAATGTATACCATGTGTT
ACAGACTGTGTCATCGCTGAGCTCGAAAAACTAGGTTCCAAATACCGTATTGCACTTCGAATTGCGCGAGATCCA
AGATTTGAACGCCTCACCTGTTCTCACAGTGGAACTTATGCCGATGACTGCTTAGTCCAGCGCGTAACGTCTCAC
AAATGCTATATCGTCGCAACTTGTGATCGGGAGCTCCGGCGACGTATTCGACAAATCCCAGGCGTCCCGTTAATG
TACATCGTGAGCCGAAAGTATGCGATAGAGAGATTACCGGATCAGGGCGCGCCTGCATGA
Gene >Agabi119p4|047620
ATGGTGCGTATTGTCGAGTGCCAGAATCGCTCATATTTTGACCTTGTCACAGGGAAAGGCAAAGAAGACGAGAAA
ATTCGCTCAGGTCAAGCGACTGCTTAACCCGAATGACATCCGACTGTATGTTACATTTTCCTTCGCTGCAAGCAC
CCTCTTACTCTCAGGTCGGCACAGAAAAGAGAACAAGGCGAAGCAAGCCAAGAAAGAAGAAGAAGTGAAAGAAAA
ACAAGTCCGTCGGGTGTCAGTGTCTCCTTGAAATACCCGCCACTTTGTCATCGCATTCTAATATTTTGATTAACA
GGACTCAAGTAGCGTCCTCGCTCTTTTTTGCCCACAACACTGCTCTAGTCCCCCCATATCGCGTACTGATAGACA
CCAACTTCATCAATTTCAGCATTCAAAACAAAATTGAACTTCTTAGTGGCATGATGGACTGTCTTTTTGCGAAAT
GTAGGCGCTTTCTCTTCTATCTCTTCCGAATTCTTTTCCGAATTCTTTTCACCGACGGCTCTAGGTATACCATGT
GTTACAGACTGTGTCATCGCTGAGCTCGAAAAACTAGGTTCCAAATACCGTATTGCACTTCGGTAAAGTCGACTC
CACATAACGTATCATTCCCTTTAATCACCACTTGTTTCTATGATCAGAATTGCGCGAGATCCAAGATTTGAACGC
CTCACCTGTTCTCACAGTGGAACTTATGCCGATGACTGCTTAGTCCAGCGCGTAACGTCTCACAAATGCTATATC
GTCGCAACTTGTGATCGGGAGCTCCGGCGACGTATTCGACAAATCCCAGGCGTCCCGTTAATGTACATCGTGAGC
CGAAAGTATGCGATAGAGAGATTACCGGATCAGGGCGCGCCTGCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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