Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|047240
Gene name
Locationscaffold_02:2080747..2081263
Strand+
Gene length (bp)516
Transcript length (bp)291
Coding sequence length (bp)291
Protein length (aa) 97

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 2.5E-15 7 71

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1 1 93 7.0E-40
sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1 1 93 7.0E-40
sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1 1 96 4.0E-39
sp|Q1H595|LSM2_ARATH Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1 1 91 3.0E-38
sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1 1 89 2.0E-36
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Swissprot ID Swissprot Description Start End E-value
sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1 1 93 7.0E-40
sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=1 SV=1 1 93 7.0E-40
sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1 1 96 4.0E-39
sp|Q1H595|LSM2_ARATH Sm-like protein LSM2 OS=Arabidopsis thaliana GN=LSM2 PE=1 SV=1 1 91 3.0E-38
sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1 1 89 2.0E-36
sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1 SV=1 1 95 8.0E-36
sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1 1 87 4.0E-13
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4 OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1 1 93 7.0E-10
sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1 10 91 5.0E-09
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4 PE=1 SV=1 1 88 6.0E-09
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4 PE=1 SV=1 1 78 1.0E-08
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4 PE=2 SV=1 1 78 1.0E-08
sp|F4K4E3|LSM4_ARATH Sm-like protein LSM4 OS=Arabidopsis thaliana GN=LSM4 PE=1 SV=1 1 87 1.0E-07
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1 1 94 1.0E-07
sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=SmD1 PE=1 SV=1 10 91 3.0E-07
sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus GN=Lsm10 PE=1 SV=1 6 73 3.0E-07
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1 1 78 4.0E-07
sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=3 SV=1 10 89 7.0E-07
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1 1 87 8.0E-07
sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1 10 73 2.0E-06
sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1 10 73 2.0E-06
sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1 10 73 2.0E-06
sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1 10 73 2.0E-06
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4 OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1 1 78 6.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|047240
MLIFSVFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKNCFIRGSVVRYVQLPAE
HVDTQLLEDATRRESQMQGKR*
Coding >Agabi119p4|047240
ATGCTTATTTTTTCAGTATTCAAAACTCTCACAGACCAAACCGTTACCGTTGAGCTCAAAAATGATTTATCTATC
ACAGGCGTGTTGAAATCGGTTGACCAATTCCTTAACATTCGCCTGGATAATATCAAAGTCTCTGATGAAAACCGG
CACCCGCACATGATGGCAGTCAAAAATTGTTTTATCCGGGGATCGGTGGTAAGATATGTACAGCTACCGGCAGAG
CACGTCGATACGCAGCTACTAGAAGATGCCACCAGACGAGAATCCCAGATGCAAGGAAAACGGTGA
Transcript >Agabi119p4|047240
ATGCTTATTTTTTCAGTATTCAAAACTCTCACAGACCAAACCGTTACCGTTGAGCTCAAAAATGATTTATCTATC
ACAGGCGTGTTGAAATCGGTTGACCAATTCCTTAACATTCGCCTGGATAATATCAAAGTCTCTGATGAAAACCGG
CACCCGCACATGATGGCAGTCAAAAATTGTTTTATCCGGGGATCGGTGGTAAGATATGTACAGCTACCGGCAGAG
CACGTCGATACGCAGCTACTAGAAGATGCCACCAGACGAGAATCCCAGATGCAAGGAAAACGGTGA
Gene >Agabi119p4|047240
ATGGTGAGTGAAGTCATCTGCGTATCAAACATCCTTTTGACAGCATAATATCATGCAGCTTATTTTTTCAGTATT
CAAAACTCTCACAGACCAAACCGTTACCGTTGAGCTCAAAAATGATTTATCTATCACAGGCGTGTTGAAATCGGT
TGACCAGTATGTGAGCGATACCAGCCTTGTGGCTTGCCAGTGATGATATGGGATCTCTGTCATGTGTAGATTCCT
TAACATTCGCCTGGATAATATCAAAGTCTCTGATGAAAACCGGCACCCGCACATGGTGCGTCCAGCCCCGTTTAC
CTACAGCTTGTGCCCGCGCTGATGGTCAGTTGTGCAGATGGCAGTCAAAAATTGTTTTATCCGGGGATCGGTGGT
AAGATATGTACAGCTACCGGCAGAGCACGTCGATACGCAGCTACTAGAAGATGCCACCAGACGAGGTATGTTCTG
CATTCGAGGGTCACCCAGTGGTTGCTAAAAATAAGCCTAGAATCCCAGATGCAAGGAAAACGGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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