© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|046700 |
| Gene name | |
| Location | scaffold_02:1879348..1880422 |
| Strand | + |
| Gene length (bp) | 1074 |
| Transcript length (bp) | 762 |
| Coding sequence length (bp) | 762 |
| Protein length (aa) | 254 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03834 | Rad10 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) | 2.1E-42 | 17 | 130 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1LZ75|ERCC1_BOVIN | DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1 | 13 | 210 | 5.0E-59 |
| sp|P07992|ERCC1_HUMAN | DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1 | 13 | 210 | 3.0E-57 |
| sp|P07903|ERCC1_MOUSE | DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2 | 13 | 210 | 3.0E-55 |
| sp|Q06182|SWI10_SCHPO | Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1 | 7 | 217 | 2.0E-54 |
| sp|Q9MA98|ERCC1_ARATH | DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1 | 16 | 216 | 3.0E-47 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q1LZ75|ERCC1_BOVIN | DNA excision repair protein ERCC-1 OS=Bos taurus GN=ERCC1 PE=2 SV=1 | 13 | 210 | 5.0E-59 |
| sp|P07992|ERCC1_HUMAN | DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1 | 13 | 210 | 3.0E-57 |
| sp|P07903|ERCC1_MOUSE | DNA excision repair protein ERCC-1 OS=Mus musculus GN=Ercc1 PE=2 SV=2 | 13 | 210 | 3.0E-55 |
| sp|Q06182|SWI10_SCHPO | Mating-type switching protein swi10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swi10 PE=3 SV=1 | 7 | 217 | 2.0E-54 |
| sp|Q9MA98|ERCC1_ARATH | DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1 | 16 | 216 | 3.0E-47 |
| sp|Q55GG6|ERCC1_DICDI | DNA excision repair protein ERCC-1 OS=Dictyostelium discoideum GN=ercc1 PE=3 SV=1 | 16 | 210 | 2.0E-20 |
| sp|P06838|RAD10_YEAST | DNA repair protein RAD10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD10 PE=1 SV=1 | 15 | 126 | 1.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0003684 | damaged DNA binding | Yes |
| GO:0006281 | DNA repair | Yes |
| GO:0051716 | cellular response to stimulus | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0006950 | response to stress | No |
| GO:0005488 | binding | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0050896 | response to stimulus | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0008150 | biological_process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003677 | DNA binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043226 | organelle | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|046700 MSSARVPPVVVPASGNNIIVNPCQRGNPVLECIRNVGKEFGDIAADYQVGRTTGVLFLSLRYHRLHPEYIHSRVE KLGHSYDHRFLLILCDITEHRDPIRELTKSCLINNITIIVAFSNDEVGHYLSVYKQFESKPPDMIKERVDKDYHA ILRGALTNIPKVNKTDVETLRSTFGSFANISRATPNQLRNLPGFGQVKVKNIENAFNKPFRNDTTTKLSQLTSTQ TTQPQPQEPLRGTGNIAQQVLSPTSSDS* |
| Coding | >Agabi119p4|046700 ATGTCCTCTGCTCGTGTGCCCCCAGTCGTTGTCCCCGCTTCTGGCAACAATATTATAGTCAATCCTTGCCAGAGG GGCAATCCCGTTCTAGAATGTATTCGGAACGTAGGCAAGGAATTCGGTGATATAGCCGCTGACTATCAAGTTGGC AGAACCACTGGAGTCTTGTTCCTCAGCCTTCGCTATCACCGCCTCCATCCGGAGTATATTCACAGCCGCGTTGAG AAGCTTGGGCATTCTTACGATCATCGTTTCCTCCTTATCCTATGTGATATTACAGAGCATAGAGATCCAATACGA GAGCTCACAAAGTCATGTCTCATCAACAACATTACTATCATCGTTGCTTTCTCGAATGATGAAGTGGGCCACTAT CTATCCGTATACAAGCAATTCGAGTCGAAACCGCCAGACATGATCAAAGAGCGTGTTGACAAGGATTATCATGCT ATCCTCCGCGGTGCCCTCACCAATATACCCAAAGTCAACAAAACAGACGTTGAGACACTCCGCTCGACGTTTGGT AGTTTTGCTAACATTTCAAGAGCAACACCCAATCAACTTCGTAACCTCCCTGGTTTTGGTCAAGTCAAGGTCAAG AACATTGAAAATGCTTTCAATAAGCCATTTCGCAATGACACCACCACCAAGTTGTCACAGCTGACATCAACACAA ACTACTCAGCCTCAACCACAAGAACCCCTCCGAGGTACAGGCAATATAGCGCAACAGGTGTTATCGCCCACCTCG TCCGATTCGTGA |
| Transcript | >Agabi119p4|046700 ATGTCCTCTGCTCGTGTGCCCCCAGTCGTTGTCCCCGCTTCTGGCAACAATATTATAGTCAATCCTTGCCAGAGG GGCAATCCCGTTCTAGAATGTATTCGGAACGTAGGCAAGGAATTCGGTGATATAGCCGCTGACTATCAAGTTGGC AGAACCACTGGAGTCTTGTTCCTCAGCCTTCGCTATCACCGCCTCCATCCGGAGTATATTCACAGCCGCGTTGAG AAGCTTGGGCATTCTTACGATCATCGTTTCCTCCTTATCCTATGTGATATTACAGAGCATAGAGATCCAATACGA GAGCTCACAAAGTCATGTCTCATCAACAACATTACTATCATCGTTGCTTTCTCGAATGATGAAGTGGGCCACTAT CTATCCGTATACAAGCAATTCGAGTCGAAACCGCCAGACATGATCAAAGAGCGTGTTGACAAGGATTATCATGCT ATCCTCCGCGGTGCCCTCACCAATATACCCAAAGTCAACAAAACAGACGTTGAGACACTCCGCTCGACGTTTGGT AGTTTTGCTAACATTTCAAGAGCAACACCCAATCAACTTCGTAACCTCCCTGGTTTTGGTCAAGTCAAGGTCAAG AACATTGAAAATGCTTTCAATAAGCCATTTCGCAATGACACCACCACCAAGTTGTCACAGCTGACATCAACACAA ACTACTCAGCCTCAACCACAAGAACCCCTCCGAGGTACAGGCAATATAGCGCAACAGGTGTTATCGCCCACCTCG TCCGATTCGTGA |
| Gene | >Agabi119p4|046700 ATGTCCTCTGCTCGTGTGCCCCCAGTCGTTGTCCCCGCTTCTGGCAACAATATTATAGTCAATCCTTGCCAGGTT TGCCGCGCTTATATTCCTAAAACCAGAACCTGACACTGGTCAGAGGGGCAATCCCGTTCTAGAATGTATTCGGAA CGTAGGCAAGGAATTCGGTGATATAGCCGCTGACTATCAAGTTGGCAGAACCACTGGAGTCTTGTTCCTCAGGTG AATGTGAATCTGCTGCATTTGATCCTAGATTTGATCCTCACATCTGCATAGCCTTCGCTATCACCGCCTCCATCC GGAGTATATTCACAGCCGCGTTGAGAAGCTTGGGCATTCTTACGATCATCGTTTCCTCCTTATCCTATGTGATAT TGTACGCGCCCAACAGTTTGAACTTCTTCCTAACTAATAGTTGCCTCTAGACAGAGCATAGAGATCCAATACGAG AGCTCACAAAGGTCAGACCGTCACTCCCCCACATGCCTTAATCTTCCCTCATCTTGACACAGTCATGTCTCATCA ACAACATTACTATCATCGTTGCTTTCTCGTACGCTCCTGTACTTCTATGCCTTGAATGTCATCTCAATCAAGCCA TTTCGTTTCAGGAATGATGAAGTGGGCCACTATCTATCCGTATACAAGCAATTCGAGTCGAAACCGCCAGACATG ATCAAAGAGCGTGTTGACAAGGATTATCATGCTATCCTCCGCGGTGCCCTCACCAATATACCCAAAGTCAACAAA ACAGACGTTGAGACACTCCGCTCGACGTTTGGTGTATGTTCCTAGAACTCTCAAAAAAAGTTTAGCTCGGTCCTG ACCGCCAGACAGAGTTTTGCTAACATTTCAAGAGCAACACCCAATCAACTTCGTAACCTCCCTGGTTTTGGTCAA GTCAAGGTCAAGAACATTGAAAATGCTTTCAATAAGCCATTTCGCAATGACACCACCACCAAGTTGTCACAGCTG ACATCAACACAAACTACTCAGCCTCAACCACAAGAACCCCTCCGAGGTACAGGCAATATAGCGCAACAGGTGTTA TCGCCCACCTCGTCCGATTCGTGA |