© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|046370 |
| Gene name | |
| Location | scaffold_02:1803099..1805219 |
| Strand | - |
| Gene length (bp) | 2120 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1740 |
| Protein length (aa) | 580 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01148 | CTP_transf_1 | Cytidylyltransferase family | 3.0E-23 | 215 | 401 |
| PF01148 | CTP_transf_1 | Cytidylyltransferase family | 6.3E-29 | 455 | 535 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 157 | 575 | 1.0E-111 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 150 | 577 | 1.0E-99 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 204 | 574 | 7.0E-77 |
| sp|P53439|CDSA_CAEEL | Phosphatidate cytidylyltransferase OS=Caenorhabditis elegans GN=cdgs-1 PE=3 SV=2 | 150 | 577 | 2.0E-75 |
| sp|O35052|CDS1_RAT | Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 | 168 | 579 | 1.0E-74 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P381|CDSH_SCHPO | Putative phosphatidate cytidylyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13A2.03 PE=1 SV=1 | 157 | 575 | 1.0E-111 |
| sp|P38221|CDS1_YEAST | Phosphatidate cytidylyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDS1 PE=1 SV=1 | 150 | 577 | 1.0E-99 |
| sp|O04928|CDS1_ARATH | Phosphatidate cytidylyltransferase 1 OS=Arabidopsis thaliana GN=CDS1 PE=1 SV=1 | 204 | 574 | 7.0E-77 |
| sp|P53439|CDSA_CAEEL | Phosphatidate cytidylyltransferase OS=Caenorhabditis elegans GN=cdgs-1 PE=3 SV=2 | 150 | 577 | 2.0E-75 |
| sp|O35052|CDS1_RAT | Phosphatidate cytidylyltransferase 1 OS=Rattus norvegicus GN=Cds1 PE=1 SV=2 | 168 | 579 | 1.0E-74 |
| sp|P98191|CDS1_MOUSE | Phosphatidate cytidylyltransferase 1 OS=Mus musculus GN=Cds1 PE=1 SV=2 | 168 | 579 | 2.0E-74 |
| sp|Q92903|CDS1_HUMAN | Phosphatidate cytidylyltransferase 1 OS=Homo sapiens GN=CDS1 PE=2 SV=2 | 168 | 579 | 2.0E-73 |
| sp|O95674|CDS2_HUMAN | Phosphatidate cytidylyltransferase 2 OS=Homo sapiens GN=CDS2 PE=1 SV=1 | 148 | 577 | 7.0E-73 |
| sp|P56079|CDSA_DROME | Phosphatidate cytidylyltransferase, photoreceptor-specific OS=Drosophila melanogaster GN=CdsA PE=1 SV=2 | 134 | 538 | 4.0E-72 |
| sp|O04940|CDS1_SOLTU | Phosphatidate cytidylyltransferase 1 OS=Solanum tuberosum GN=CDS1 PE=1 SV=1 | 204 | 574 | 5.0E-72 |
| sp|O49639|CDS2_ARATH | Phosphatidate cytidylyltransferase 2 OS=Arabidopsis thaliana GN=CDS2 PE=1 SV=1 | 204 | 576 | 1.0E-71 |
| sp|A0JNC1|CDS2_BOVIN | Phosphatidate cytidylyltransferase 2 OS=Bos taurus GN=CDS2 PE=2 SV=1 | 155 | 577 | 2.0E-71 |
| sp|Q99L43|CDS2_MOUSE | Phosphatidate cytidylyltransferase 2 OS=Mus musculus GN=Cds2 PE=1 SV=1 | 169 | 577 | 1.0E-70 |
| sp|Q91XU8|CDS2_RAT | Phosphatidate cytidylyltransferase 2 OS=Rattus norvegicus GN=Cds2 PE=1 SV=1 | 169 | 578 | 2.0E-69 |
| sp|Q1PE48|CDS3_ARATH | Phosphatidate cytidylyltransferase 3 OS=Arabidopsis thaliana GN=CDS3 PE=1 SV=1 | 157 | 572 | 2.0E-64 |
| sp|Q55D90|CDSA_DICDI | Probable phosphatidate cytidylyltransferase OS=Dictyostelium discoideum GN=cdsA PE=3 SV=1 | 192 | 572 | 3.0E-62 |
| sp|Q95ZE3|CDS1_ENCCU | Phosphatidate cytidylyltransferase OS=Encephalitozoon cuniculi (strain GB-M1) GN=CDS1 PE=3 SV=1 | 316 | 573 | 4.0E-36 |
| sp|Q68WV5|CDSA_RICTY | Phosphatidate cytidylyltransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=cdsA PE=3 SV=1 | 458 | 524 | 8.0E-09 |
| sp|Q92I31|CDSA_RICCN | Phosphatidate cytidylyltransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=cdsA PE=3 SV=1 | 468 | 524 | 1.0E-08 |
| sp|Q9ZDA8|CDSA_RICPR | Phosphatidate cytidylyltransferase OS=Rickettsia prowazekii (strain Madrid E) GN=cdsA PE=3 SV=1 | 468 | 520 | 2.0E-08 |
| sp|Q4ULR7|CDSA_RICFE | Phosphatidate cytidylyltransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=cdsA PE=3 SV=1 | 468 | 524 | 2.0E-07 |
| sp|Q1RII7|CDSA_RICBR | Phosphatidate cytidylyltransferase OS=Rickettsia bellii (strain RML369-C) GN=cdsA PE=3 SV=1 | 452 | 524 | 3.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 218 | 240 | 22 |
| 2 | 281 | 303 | 22 |
| 3 | 316 | 338 | 22 |
| 4 | 358 | 380 | 22 |
| 5 | 392 | 414 | 22 |
| 6 | 474 | 496 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|046370 MSRQSNVHSLFSSPAFSALEVEPGEDTEEEELPEEFEERPAETKPSKAALKKAARQVHREEKLRKRAEAKKRRVE DRQHSPISDTVPTFEATSNGSVLPHIPPSAVSASSNVEEVTPSPQSTPLVSPQLEPEVMAEPVLEPTGECVSVHD QPVYEPERPSSTTNAGKTPEEVDVEKVEPEAMLISHDGTTATEVQHQQDATADVEKLKKRQNALTRTIWTLIMIG GFIGLLLMGHVYMMILVMVCQTVAYREVTALFGLATTELSTQDKQSLKDKDPWSKTLNWYFFAVTNYFLYGESII YYFKHVVFADPQLVPFITNHRMISFTLYVIGFMGFVMSLKKGFLKQQFGLFCWVHMTLLMIVVSSHFVVNNILEG LIWFWVPASLVICNDVFAYIWGITIGLFALFWGTLFMRFNYMICPVHDLGISAWNSTQCKPNPVFVWRELPLWHP FAIFMSTLLGRTITAIPYAPYHLHLLLMACFASLVAPFGGFFASGFKRAFKIKDFGHSIPGHGGMTDRMDCQFLM GVFTYVYYSSLIREHHVTVGTILQTIVSGLTVDEQIELVADLHRYLETQGIVVP* |
| Coding | >Agabi119p4|046370 ATGAGCAGACAGTCCAACGTCCACAGTCTCTTCTCAAGCCCTGCGTTTTCCGCTCTAGAAGTAGAGCCTGGAGAA GACACAGAGGAAGAAGAGTTACCCGAAGAATTTGAAGAAAGACCAGCAGAAACCAAGCCTTCAAAAGCCGCCCTT AAGAAGGCTGCCCGGCAAGTGCATCGTGAGGAAAAACTGCGAAAGCGAGCAGAGGCAAAGAAACGACGAGTGGAG GACCGTCAGCACTCTCCAATTTCAGATACTGTACCCACCTTCGAGGCTACCTCAAACGGCTCTGTTCTACCACAC ATTCCACCGTCAGCTGTTTCTGCATCCTCTAATGTTGAGGAGGTAACCCCCTCTCCCCAGTCCACACCTTTGGTC TCGCCTCAGCTGGAGCCAGAGGTTATGGCTGAACCGGTCCTTGAGCCTACCGGGGAATGTGTCTCTGTTCATGAC CAACCGGTATATGAACCGGAAAGGCCTTCTAGCACAACGAACGCTGGTAAAACTCCGGAAGAAGTGGATGTCGAG AAGGTTGAACCCGAAGCCATGCTTATTTCACATGATGGCACAACAGCCACTGAGGTGCAACACCAACAAGACGCC ACCGCTGACGTTGAAAAGTTAAAAAAACGTCAGAATGCTCTGACGAGGACCATATGGACTCTTATCATGATTGGT GGATTTATTGGACTTCTGCTTATGGGCCATGTTTATATGATGATACTTGTGATGGTTTGCCAGACCGTGGCATAT CGCGAGGTCACGGCACTCTTTGGTCTTGCTACAACTGAACTTAGTACCCAAGACAAACAGTCCTTAAAAGACAAA GATCCCTGGAGTAAAACTTTGAACTGGTACTTCTTTGCCGTCACCAACTATTTCTTATACGGAGAGAGTATCATA TATTACTTCAAGCATGTAGTCTTCGCCGATCCTCAACTTGTACCCTTCATTACGAACCACCGCATGATCAGTTTC ACTCTCTATGTCATTGGCTTCATGGGCTTCGTCATGTCGCTGAAAAAAGGCTTTTTGAAGCAGCAGTTTGGTTTG TTTTGTTGGGTGCACATGACTCTCTTGATGATCGTCGTTTCAAGCCACTTTGTCGTCAACAATATCCTCGAAGGG CTGATCTGGTTCTGGGTTCCTGCGTCGCTTGTCATCTGTAATGACGTCTTTGCCTACATCTGGGGTATCACAATT GGCCTTTTCGCGCTTTTTTGGGGTACGCTCTTCATGCGTTTCAACTACATGATTTGCCCTGTCCATGACCTGGGT ATCAGTGCTTGGAACTCGACCCAGTGCAAGCCTAACCCCGTTTTCGTCTGGCGAGAACTACCGTTGTGGCATCCA TTTGCCATTTTCATGTCCACTCTGCTTGGTCGTACCATCACTGCGATACCGTATGCTCCTTACCACCTCCACCTT CTGTTGATGGCATGTTTTGCGTCACTTGTTGCTCCTTTTGGAGGGTTTTTTGCCTCAGGGTTCAAACGTGCTTTC AAAATCAAAGACTTTGGTCACAGTATCCCGGGACATGGCGGAATGACCGACCGAATGGATTGCCAATTCCTCATG GGTGTTTTCACATATGTTTACTATAGCAGTCTCATTCGTGAGCACCATGTCACAGTTGGCACTATTCTACAGACC ATCGTCAGTGGTCTTACCGTTGATGAGCAAATTGAGCTTGTTGCGGATCTACATCGCTATTTGGAGACGCAGGGT ATTGTCGTACCATGA |
| Transcript | >Agabi119p4|046370 ATGAGCAGACAGTCCAACGTCCACAGTCTCTTCTCAAGCCCTGCGTTTTCCGCTCTAGAAGTAGAGCCTGGAGAA GACACAGAGGAAGAAGAGTTACCCGAAGAATTTGAAGAAAGACCAGCAGAAACCAAGCCTTCAAAAGCCGCCCTT AAGAAGGCTGCCCGGCAAGTGCATCGTGAGGAAAAACTGCGAAAGCGAGCAGAGGCAAAGAAACGACGAGTGGAG GACCGTCAGCACTCTCCAATTTCAGATACTGTACCCACCTTCGAGGCTACCTCAAACGGCTCTGTTCTACCACAC ATTCCACCGTCAGCTGTTTCTGCATCCTCTAATGTTGAGGAGGTAACCCCCTCTCCCCAGTCCACACCTTTGGTC TCGCCTCAGCTGGAGCCAGAGGTTATGGCTGAACCGGTCCTTGAGCCTACCGGGGAATGTGTCTCTGTTCATGAC CAACCGGTATATGAACCGGAAAGGCCTTCTAGCACAACGAACGCTGGTAAAACTCCGGAAGAAGTGGATGTCGAG AAGGTTGAACCCGAAGCCATGCTTATTTCACATGATGGCACAACAGCCACTGAGGTGCAACACCAACAAGACGCC ACCGCTGACGTTGAAAAGTTAAAAAAACGTCAGAATGCTCTGACGAGGACCATATGGACTCTTATCATGATTGGT GGATTTATTGGACTTCTGCTTATGGGCCATGTTTATATGATGATACTTGTGATGGTTTGCCAGACCGTGGCATAT CGCGAGGTCACGGCACTCTTTGGTCTTGCTACAACTGAACTTAGTACCCAAGACAAACAGTCCTTAAAAGACAAA GATCCCTGGAGTAAAACTTTGAACTGGTACTTCTTTGCCGTCACCAACTATTTCTTATACGGAGAGAGTATCATA TATTACTTCAAGCATGTAGTCTTCGCCGATCCTCAACTTGTACCCTTCATTACGAACCACCGCATGATCAGTTTC ACTCTCTATGTCATTGGCTTCATGGGCTTCGTCATGTCGCTGAAAAAAGGCTTTTTGAAGCAGCAGTTTGGTTTG TTTTGTTGGGTGCACATGACTCTCTTGATGATCGTCGTTTCAAGCCACTTTGTCGTCAACAATATCCTCGAAGGG CTGATCTGGTTCTGGGTTCCTGCGTCGCTTGTCATCTGTAATGACGTCTTTGCCTACATCTGGGGTATCACAATT GGCCTTTTCGCGCTTTTTTGGGGTACGCTCTTCATGCGTTTCAACTACATGATTTGCCCTGTCCATGACCTGGGT ATCAGTGCTTGGAACTCGACCCAGTGCAAGCCTAACCCCGTTTTCGTCTGGCGAGAACTACCGTTGTGGCATCCA TTTGCCATTTTCATGTCCACTCTGCTTGGTCGTACCATCACTGCGATACCGTATGCTCCTTACCACCTCCACCTT CTGTTGATGGCATGTTTTGCGTCACTTGTTGCTCCTTTTGGAGGGTTTTTTGCCTCAGGGTTCAAACGTGCTTTC AAAATCAAAGACTTTGGTCACAGTATCCCGGGACATGGCGGAATGACCGACCGAATGGATTGCCAATTCCTCATG GGTGTTTTCACATATGTTTACTATAGCAGTCTCATTCGTGAGCACCATGTCACAGTTGGCACTATTCTACAGACC ATCGTCAGTGGTCTTACCGTTGATGAGCAAATTGAGCTTGTTGCGGATCTACATCGCTATTTGGAGACGCAGGGT ATTGTCGTACCATGA |
| Gene | >Agabi119p4|046370 ATGAGCAGACAGTCCAACGTCCACAGTCTCTTCTCAAGCCCTGCGTTTTCCGCTCTAGAAGTAGAGCCTGGAGAA GACACAGAGGAAGAAGAGTTACCCGAAGAATTTGAAGAAAGGTTTGTCCAGCACATCACTTTCTATGACCGCCTT CATAACTTATGAGTGATAGACCAGCAGAAACCAAGCCTTCAAAAGCCGCCCTTAAGAAGGCTGCCCGGCAAGTGC ATCGTGAGGAAAAACTGCGAAAGCGAGCAGAGGCAAAGAAACGACGAGTGGAGGACCGTCAGCACTCTCCAATTT CAGATACTGTACCCACCTTCGAGGCTACCTCAAACGGCTCTGTTCTACCACACATTCCACCGTCAGCTGTTTCTG CATCCTCTAATGTTGAGGAGGTAACCCCCTCTCCCCAGTCCACACCTTTGGTCTCGCCTCAGCTGGAGCCAGAGG TTATGGCTGAACCGGTCCTTGAGCCTACCGGGGAATGTGTCTCTGTTCATGACCAACCGGTATATGAACCGGAAA GGCCTTCTAGCACAACGAACGCTGGTAAAACTCCGGAAGAAGTGGATGTCGAGAAGGTTGAACCCGAAGCCATGC TTATTTCACATGATGGCACAACAGCCACTGAGGTGCAACACCAACAAGACGCCACCGCTGACGTTGAAAAGTTAA AAAAACGTCAGAATGCTCTGACGAGGACCATATGGACTCTTATCATGATTGGTGGATTTATTGGTGAGAAAGGCC ATATCTGACTGTATTCGATAGGACGCTTATTCCATTACCAGGACTTCTGCTTATGGGCCATGTTTATATGATGAT ACTTGTGATGGTTTGCCAGACCGTGGCATATCGCGAGGTCACGGCACTCTTTGGTCTTGCTACAACTGAACTTAG TACCCAAGACAAACAGTCCTTAAAAGACAAAGATCCCTGGAGTAAAACTTTGAACTGGTACTTCTTTGCCGTCAC CAACTATTTCTTATACGGAGAGAGTATCATATATTACTTCAAGGTACGTCATCAAAAGTCTCTTCGACTCTGCTG ACCATATTACCAGCATGTAGTCTTCGCCGATCCTCAACTTGTACCCTTCATTACGAACCACCGCATGATCAGTTT CACTCTCTATGTCATTGGCTTCATGGGCTTCGTCATGTCGCTGAAAAAAGGCTTTTTGAAGCAGCAGTTTGGTTT GTTTTGTTGGGTGCACATGACTCTCTTGATGATCGTCGTTTCAAGGTGCAGTCATTACTTTTACCCGTCTTCAGT TTACTCATTGTGGTTTCTAGCCACTTTGTCGTCAACAATATCCTCGAAGGGCTGATCTGGTTCTGGGTTCCTGCG TCGCTTGTCATCTGTAATGACGTCTTTGCCTACATCTGGGGTATCACAATTGGCCGTACGCCACTTATTCAACTG TCACCGAAAAAAACAGTGGAAGGTTTTGTCGGTGCTTTTTTCAGTACCTTAGTTTTCGCGCTTTTTTGGGGTACG CTCTTCATGCGTTTCAACTACATGATTTGCCCTGTCCATGACCTGGGTATCAGTGCTTGGAACTCGACCCAGTGC AAGCCTAACCCCGTTTTCGTCTGGCGAGAACTACCGTTGTGGCATCCATTTGCCATTTTCATGTCCACTCTGGTA TGTTTCTTTGGCCTGAGAGCTACTTTGCTTGCTGACGGTAGTTCAAGCTTGGTCGTACCATCACTGCGATACCGT ATGCTCCTTACCACCTCCACCTTCTGTTGATGGCATGTTTTGCGTCACTTGTTGCTCCTTTTGGAGGGTTTTTTG CCTCAGGGTTCAAACGTGCTTTCAAAATCAAAGACTTTGGTCACAGTATCCCGGGACATGGCGGAATGACCGACC GAATGGATTGCCAGTGAGTATCGAGAGCTCTGGCTTGGCACTTGACAAAGCAGCTCAATTTACCTTGCAGATTCC TCATGGGTGTTTTCACATATGTTTACTATAGCAGTCTCATTCGTGAGCACCATGTCACAGTTGGCACTATTCTAC AGACCATCGTCAGTGGTCTTACCGTTGATGAGCAAATTGAGCTTGTTGCGGATCTACATCGCTATTTGGAGACGC AGGGTATTGTCGTACCATGA |