Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|044650
Gene name
Locationscaffold_02:1395175..1396688
Strand-
Gene length (bp)1513
Transcript length (bp)1353
Coding sequence length (bp)1353
Protein length (aa) 451

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12756 zf-C2H2_2 C2H2 type zinc-finger (2 copies) 3.7E-32 176 275
PF12874 zf-met Zinc-finger of C2H2 type 2.0E-09 72 94
PF12171 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 5.9E-08 71 95

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1 6 450 2.0E-77
sp|P38344|REI1_YEAST Cytoplasmic 60S subunit biogenesis factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3 1 450 5.0E-59
sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1 176 356 6.0E-49
sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=1 SV=1 176 356 6.0E-47
sp|G0S920|REI1_CHATD Cytoplasmic 60S subunit biogenesis factor REI1 homolog OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=CTHT_0044240 PE=3 SV=2 7 360 2.0E-44
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Swissprot ID Swissprot Description Start End E-value
sp|O59811|REI1_SCHPO Cytoplasmic 60S subunit biogenesis factor SPCC550.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1 6 450 2.0E-77
sp|P38344|REI1_YEAST Cytoplasmic 60S subunit biogenesis factor REI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REI1 PE=1 SV=3 1 450 5.0E-59
sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1 176 356 6.0E-49
sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=1 SV=1 176 356 6.0E-47
sp|G0S920|REI1_CHATD Cytoplasmic 60S subunit biogenesis factor REI1 homolog OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=CTHT_0044240 PE=3 SV=2 7 360 2.0E-44
sp|Q06709|REH1_YEAST Cytoplasmic 60S subunit biogenesis factor REH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REH1 PE=1 SV=1 7 450 5.0E-42
sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1 176 338 3.0E-37
sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=1 SV=2 176 307 3.0E-37
sp|Q90Y35|ZN622_CHICK Zinc finger protein 622 OS=Gallus gallus GN=ZNF622 PE=2 SV=1 7 102 2.0E-19
sp|Q91VY9|ZN622_MOUSE Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=1 SV=1 6 102 3.0E-17
sp|Q7TM96|ZN622_RAT Zinc finger protein 622 OS=Rattus norvegicus GN=Znf622 PE=1 SV=2 7 102 3.0E-17
sp|Q969S3|ZN622_HUMAN Zinc finger protein 622 OS=Homo sapiens GN=ZNF622 PE=1 SV=1 7 102 2.0E-16
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
C2H2 zinc finger

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|044650
MDNQPAFTCLSCSIAFLSPEEQRDHYKSDHHRYNMKRRVAGLPPVSVSVFNQKVLDRKTETAIMASTRGSICEVC
NKVYTTENSYRSHLQSKKHKENELRPVPRSKPVSERPEEQQLPTTDLQENVPEAKKEQVRVVETKLAALTVDEEG
SPEEEINCTIDEKIAAARARLSPSHCLFCPHQSSDLADNLTHMSSSHSFFIPDADYLVDLPGLITYLGEKIAVGN
ICIYCNDKGKEFRSLEAVRKHMVDKSHCKITYESESDRLEVSDYYDFTSSYPDTQHKKKKQIKEDQEWEDVEGGD
ADADEIVDEEMSGSEEDSEELPDTQITYGDSHLELVLPSGARIGHRSLKRYYDQSFPAAPRGGKTEDPNSGAAFV
RRLMADKNSALVPRKGGFGAFGAGTDVIKARNRGEAKEAGRHVREFRDQKRREDFKTKVGFIHNHQKHFRDPLLQ
*
Coding >Agabi119p4|044650
ATGGACAACCAACCCGCATTCACTTGCCTATCATGTTCTATCGCTTTCCTCTCACCAGAGGAACAGCGTGACCAT
TACAAGTCTGATCACCATCGCTACAATATGAAGCGTCGAGTGGCGGGACTACCGCCCGTTAGTGTTTCTGTATTC
AATCAGAAAGTGTTGGATCGCAAAACAGAAACTGCCATCATGGCCTCTACGAGAGGCTCGATCTGTGAGGTTTGC
AATAAAGTCTATACAACCGAAAATTCGTATCGTTCCCATCTGCAATCTAAAAAACACAAGGAAAATGAATTGCGT
CCTGTCCCTCGGTCTAAACCAGTTTCCGAACGTCCTGAAGAGCAGCAGCTTCCCACTACAGACCTGCAGGAGAAT
GTTCCAGAGGCGAAGAAAGAACAAGTCAGGGTTGTAGAGACGAAACTTGCTGCTCTCACTGTAGATGAAGAAGGG
TCACCAGAAGAAGAAATCAACTGTACCATCGACGAAAAGATCGCAGCCGCTCGTGCTAGACTGTCTCCCTCTCAC
TGTCTATTCTGCCCTCATCAATCTTCCGACCTCGCAGACAACTTGACCCACATGTCTTCTTCTCATTCATTCTTC
ATCCCCGACGCTGATTACCTTGTCGACCTTCCCGGTCTGATCACGTATCTCGGTGAAAAAATTGCTGTCGGTAAT
ATTTGCATTTATTGCAACGACAAAGGAAAAGAATTCCGGTCGCTGGAAGCAGTTCGCAAACACATGGTTGACAAA
AGCCATTGTAAAATCACATATGAAAGCGAATCGGATCGCCTCGAAGTCTCGGATTATTACGACTTCACAAGCTCA
TATCCCGATACTCAGCACAAGAAGAAAAAACAAATCAAGGAGGATCAGGAATGGGAAGATGTTGAAGGAGGAGAT
GCAGATGCAGATGAGATTGTAGATGAAGAAATGTCAGGATCAGAAGAGGATTCAGAGGAGCTACCGGACACTCAG
ATCACATATGGCGACTCCCACCTTGAGCTCGTGTTGCCTTCCGGTGCACGCATCGGGCATCGATCACTGAAGCGC
TATTATGATCAATCATTCCCTGCGGCGCCTAGGGGAGGGAAAACAGAAGACCCCAATTCTGGTGCAGCTTTTGTT
CGCCGATTAATGGCGGACAAGAACTCAGCCTTGGTTCCCCGCAAAGGTGGATTCGGAGCCTTTGGGGCTGGAACG
GATGTCATCAAGGCGCGGAATCGTGGTGAAGCCAAAGAGGCCGGTCGCCATGTTCGTGAATTCCGTGATCAAAAA
CGGCGCGAAGACTTCAAGACCAAAGTTGGCTTCATTCATAATCACCAGAAGCATTTTAGAGATCCCTTGCTTCAA
TGA
Transcript >Agabi119p4|044650
ATGGACAACCAACCCGCATTCACTTGCCTATCATGTTCTATCGCTTTCCTCTCACCAGAGGAACAGCGTGACCAT
TACAAGTCTGATCACCATCGCTACAATATGAAGCGTCGAGTGGCGGGACTACCGCCCGTTAGTGTTTCTGTATTC
AATCAGAAAGTGTTGGATCGCAAAACAGAAACTGCCATCATGGCCTCTACGAGAGGCTCGATCTGTGAGGTTTGC
AATAAAGTCTATACAACCGAAAATTCGTATCGTTCCCATCTGCAATCTAAAAAACACAAGGAAAATGAATTGCGT
CCTGTCCCTCGGTCTAAACCAGTTTCCGAACGTCCTGAAGAGCAGCAGCTTCCCACTACAGACCTGCAGGAGAAT
GTTCCAGAGGCGAAGAAAGAACAAGTCAGGGTTGTAGAGACGAAACTTGCTGCTCTCACTGTAGATGAAGAAGGG
TCACCAGAAGAAGAAATCAACTGTACCATCGACGAAAAGATCGCAGCCGCTCGTGCTAGACTGTCTCCCTCTCAC
TGTCTATTCTGCCCTCATCAATCTTCCGACCTCGCAGACAACTTGACCCACATGTCTTCTTCTCATTCATTCTTC
ATCCCCGACGCTGATTACCTTGTCGACCTTCCCGGTCTGATCACGTATCTCGGTGAAAAAATTGCTGTCGGTAAT
ATTTGCATTTATTGCAACGACAAAGGAAAAGAATTCCGGTCGCTGGAAGCAGTTCGCAAACACATGGTTGACAAA
AGCCATTGTAAAATCACATATGAAAGCGAATCGGATCGCCTCGAAGTCTCGGATTATTACGACTTCACAAGCTCA
TATCCCGATACTCAGCACAAGAAGAAAAAACAAATCAAGGAGGATCAGGAATGGGAAGATGTTGAAGGAGGAGAT
GCAGATGCAGATGAGATTGTAGATGAAGAAATGTCAGGATCAGAAGAGGATTCAGAGGAGCTACCGGACACTCAG
ATCACATATGGCGACTCCCACCTTGAGCTCGTGTTGCCTTCCGGTGCACGCATCGGGCATCGATCACTGAAGCGC
TATTATGATCAATCATTCCCTGCGGCGCCTAGGGGAGGGAAAACAGAAGACCCCAATTCTGGTGCAGCTTTTGTT
CGCCGATTAATGGCGGACAAGAACTCAGCCTTGGTTCCCCGCAAAGGTGGATTCGGAGCCTTTGGGGCTGGAACG
GATGTCATCAAGGCGCGGAATCGTGGTGAAGCCAAAGAGGCCGGTCGCCATGTTCGTGAATTCCGTGATCAAAAA
CGGCGCGAAGACTTCAAGACCAAAGTTGGCTTCATTCATAATCACCAGAAGCATTTTAGAGATCCCTTGCTTCAA
TGA
Gene >Agabi119p4|044650
ATGGACAACCAACCCGCATTCACTTGCCTATCATGTTCTATCGCTTTCCTCTCACCAGAGGAACAGCGTAAGTCT
CCCATCATGTTCAATATACACCATCTTGACACCCTTTTCAGGTGACCATTACAAGTCTGATCACCATCGCTACAA
TATGAAGCGTCGAGTGGCGGGACTACCGCCCGTTAGTGTTTCTGTATTCAATCAGAAAGTGTTGGATCGCAAAAC
AGAAACTGCCATCATGGCCTCTACGAGAGGCTCGATCTGTGAGGTTTGCAAGTGAGTCATCTCCGGCTCCGCCCC
CACATCTCAAGATTCTCAAAAGTTGCTCCACAGTAAAGTCTATACAACCGAAAATTCGTATCGTTCCCATCTGCA
ATCTAAAAAACACAAGGAAAATGAATTGCGTCCTGTCCCTCGGTCTAAACCAGTTTCCGAACGTCCTGAAGAGCA
GCAGCTTCCCACTACAGACCTGCAGGAGAATGTTCCAGAGGCGAAGAAAGAACAAGTCAGGGTTGTAGAGACGAA
ACTTGCTGCTCTCACTGTAGATGAAGAAGGGTCACCAGAAGAAGAAATCAACTGTACCATCGACGAAAAGATCGC
AGCCGCTCGTGCTAGACTGTCTCCCTCTCACTGTCTATTCTGCCCTCATCAATCTTCCGACCTCGCAGACAACTT
GACCCACATGTCTTCTTCTCATTCATTCTTCATCCCCGACGCTGATTACCTTGTCGACCTTCCCGGTCTGATCAC
GTATCTCGGTGAAAAAATTGCTGTCGGTAATATTTGCATTTATTGCAACGACAAAGGAAAAGAATTCCGGTCGCT
GGAAGCAGTTCGCAAACACATGGTTGACAAAAGCCATTGTAAAATCACATATGAAAGCGAATCGGATCGCCTCGA
AGTCTCGGATTATTACGACTTCACAAGCTCATATCCCGATACTCAGCACAAGAAGAAAAAACAAATCAAGGAGGA
TCAGGAATGGGAAGATGTTGAAGGAGGAGATGCAGATGCAGATGAGATTGTAGATGAAGAAATGTCAGGATCAGA
AGAGGATTCAGAGGAGCTACCGGACACTCAGATCACATATGGCGACTCCCACCTTGAGCTCGTGTTGCCTTCCGG
TGCACGCATCGGGCATCGATCACTGAAGCGCTATTATGATCAATCATTCCCTGCGGCGCCTAGGGGAGGGAAAAC
AGAAGACCCCAATTCTGGTGCAGCTTTTGTTCGCCGATTAATGGCGGACAAGAACTCAGCCTTGGTTCCCCGCAA
AGGTGGATTCGGAGCCTTTGGGGCTGGAACGGATGTCATCAAGGCGCGGAATCGTGGTGAAGCCAAAGAGGCCGG
TCGCCATGTTCGTGAATTCCGTGATCAAAAACGGCGCGAAGACTTCAAGACCAAAGTTGGCTTCATTCATAATCA
CCAGAAGCATTTTAGAGATCCCTGTGCGTATATGCCTCCCGGTTTTTTTAATTCATACACTCATTATCGCTTTGC
AGTGCTTCAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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