© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|043320 |
| Gene name | |
| Location | scaffold_02:1083646..1085832 |
| Strand | - |
| Gene length (bp) | 2186 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00723 | Glyco_hydro_15 | Glycosyl hydrolases family 15 | 1.9E-91 | 36 | 450 |
| PF00686 | CBM_20 | Starch binding domain | 2.1E-27 | 482 | 569 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36914|AMYG_ASPOR | Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2 | 21 | 574 | 0.0E+00 |
| sp|D8Q9M3|AMYG_SCHCM | Glucoamylase ARB_02327-1 OS=Schizophyllum commune (strain H4-8 / FGSC 9210) GN=SCHCODRAFT_57589 PE=1 SV=1 | 20 | 574 | 0.0E+00 |
| sp|P14804|AMYG_NEUCR | Glucoamylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=gla-1 PE=1 SV=3 | 24 | 574 | 9.0E-177 |
| sp|P0DN29|AMYG_ARTBC | Glucoamylase ARB_02327-1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02327-1 PE=1 SV=1 | 1 | 574 | 8.0E-169 |
| sp|Q03045|AMYG_AMORE | Glucoamylase P OS=Amorphotheca resinae GN=GAMP PE=1 SV=1 | 8 | 573 | 1.0E-164 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P36914|AMYG_ASPOR | Glucoamylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=glaA PE=2 SV=2 | 21 | 574 | 0.0E+00 |
| sp|D8Q9M3|AMYG_SCHCM | Glucoamylase ARB_02327-1 OS=Schizophyllum commune (strain H4-8 / FGSC 9210) GN=SCHCODRAFT_57589 PE=1 SV=1 | 20 | 574 | 0.0E+00 |
| sp|P14804|AMYG_NEUCR | Glucoamylase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=gla-1 PE=1 SV=3 | 24 | 574 | 9.0E-177 |
| sp|P0DN29|AMYG_ARTBC | Glucoamylase ARB_02327-1 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02327-1 PE=1 SV=1 | 1 | 574 | 8.0E-169 |
| sp|Q03045|AMYG_AMORE | Glucoamylase P OS=Amorphotheca resinae GN=GAMP PE=1 SV=1 | 8 | 573 | 1.0E-164 |
| sp|P22832|AMYG_ASPSH | Glucoamylase OS=Aspergillus shirousami GN=glaA PE=3 SV=1 | 20 | 489 | 2.0E-163 |
| sp|P23176|AMYG_ASPKA | Glucoamylase I OS=Aspergillus kawachii GN=gaI PE=1 SV=1 | 20 | 489 | 1.0E-162 |
| sp|P69327|AMYG_ASPAW | Glucoamylase OS=Aspergillus awamori GN=GLAA PE=1 SV=1 | 20 | 477 | 2.0E-162 |
| sp|P69328|AMYG_ASPNG | Glucoamylase OS=Aspergillus niger GN=GLAA PE=1 SV=1 | 20 | 477 | 2.0E-162 |
| sp|O60087|AMYG_SCHPO | Probable glucoamylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=meu17 PE=2 SV=1 | 14 | 457 | 5.0E-79 |
| sp|P07683|AMYG_RHIOR | Glucoamylase 1 OS=Rhizopus oryzae PE=1 SV=2 | 23 | 456 | 6.0E-77 |
| sp|I1BYW6|AMYD_RHIO9 | Glucoamylase amyD OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=amyD PE=1 SV=1 | 19 | 456 | 1.0E-71 |
| sp|P42042|AMYG_BLAAD | Glucoamylase OS=Blastobotrys adeninivorans GN=GAA PE=3 SV=1 | 31 | 457 | 4.0E-71 |
| sp|P26989|AMYH_SACFI | Glucoamylase GLA1 OS=Saccharomycopsis fibuligera GN=GLA1 PE=3 SV=2 | 23 | 457 | 2.0E-60 |
| sp|P08017|AMYG_SACFI | Glucoamylase GLU1 OS=Saccharomycopsis fibuligera GN=GLU1 PE=1 SV=1 | 23 | 457 | 3.0E-58 |
| sp|P08019|AMYG_YEAST | Glucoamylase, intracellular sporulation-specific OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGA1 PE=3 SV=2 | 22 | 458 | 5.0E-50 |
| sp|P04065|AMYH_YEASX | Glucoamylase S1 OS=Saccharomyces cerevisiae GN=STA1 PE=3 SV=2 | 22 | 410 | 5.0E-41 |
| sp|P29760|AMYI_YEASX | Glucoamylase S2 OS=Saccharomyces cerevisiae GN=STA2 PE=3 SV=1 | 22 | 410 | 7.0E-41 |
| sp|P22998|AMY_STRVL | Alpha-amylase OS=Streptomyces violaceus GN=aml PE=2 SV=1 | 480 | 574 | 2.0E-20 |
| sp|P69328|AMYG_ASPNG | Glucoamylase OS=Aspergillus niger GN=GLAA PE=1 SV=1 | 483 | 574 | 6.0E-18 |
| sp|P69327|AMYG_ASPAW | Glucoamylase OS=Aspergillus awamori GN=GLAA PE=1 SV=1 | 483 | 574 | 6.0E-18 |
| sp|P09794|AMY_STRLM | Alpha-amylase OS=Streptomyces limosus GN=aml PE=3 SV=1 | 484 | 574 | 4.0E-17 |
| sp|P30270|AMY_STRGR | Alpha-amylase OS=Streptomyces griseus GN=amy PE=3 SV=1 | 484 | 574 | 4.0E-17 |
| sp|P09121|CDGT_BACS3 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 38-2) GN=cgt PE=1 SV=2 | 488 | 574 | 4.0E-15 |
| sp|P05618|CDGT_BACS0 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 1011) GN=cgt PE=1 SV=1 | 488 | 574 | 4.0E-15 |
| sp|O30565|CDGT_BREBE | Cyclomaltodextrin glucanotransferase OS=Brevibacillus brevis GN=cgt PE=3 SV=1 | 477 | 573 | 1.0E-14 |
| sp|P43379|CDGT2_BACCI | Cyclomaltodextrin glucanotransferase OS=Bacillus circulans GN=cgt PE=1 SV=1 | 477 | 574 | 8.0E-14 |
| sp|P17692|CDGT_BACS8 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain B1018) GN=cgt PE=1 SV=1 | 477 | 574 | 2.0E-13 |
| sp|P30921|CDGT_BAC11 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 17-1) GN=cgt PE=1 SV=1 | 477 | 574 | 5.0E-13 |
| sp|P27036|CDGT_BACOH | Cyclomaltodextrin glucanotransferase OS=Bacillus ohbensis GN=cgt PE=3 SV=2 | 477 | 574 | 1.0E-12 |
| sp|P31746|CDGT_BACS2 | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 1-1) GN=cgt PE=1 SV=1 | 477 | 573 | 1.0E-12 |
| sp|P31747|CDGT_BACSS | Cyclomaltodextrin glucanotransferase OS=Bacillus sp. (strain 6.6.3) GN=cgt PE=3 SV=1 | 488 | 574 | 1.0E-11 |
| sp|P31835|CDGT2_PAEMA | Cyclomaltodextrin glucanotransferase OS=Paenibacillus macerans PE=1 SV=1 | 483 | 574 | 2.0E-11 |
| sp|P30920|CDGT1_BACCI | Cyclomaltodextrin glucanotransferase OS=Bacillus circulans PE=1 SV=1 | 477 | 574 | 2.0E-11 |
| sp|P26827|CDGT_THETU | Cyclomaltodextrin glucanotransferase OS=Thermoanaerobacterium thermosulfurigenes GN=amyA PE=1 SV=2 | 488 | 574 | 3.0E-11 |
| sp|P04830|CDGT1_PAEMA | Cyclomaltodextrin glucanotransferase OS=Paenibacillus macerans GN=cgtM PE=1 SV=2 | 477 | 574 | 4.0E-11 |
| sp|P14014|CDGT_BACLI | Cyclomaltodextrin glucanotransferase OS=Bacillus licheniformis GN=cgtA PE=3 SV=1 | 477 | 574 | 5.0E-11 |
| sp|P29750|AMY_THECU | Alpha-amylase OS=Thermomonospora curvata GN=tam PE=1 SV=1 | 459 | 551 | 2.0E-08 |
| sp|P19584|AMYB_THETU | Thermophilic beta-amylase OS=Thermoanaerobacterium thermosulfurigenes PE=1 SV=1 | 480 | 574 | 4.0E-08 |
| sp|P31797|CDGT_GEOSE | Cyclomaltodextrin glucanotransferase OS=Geobacillus stearothermophilus GN=cgt PE=1 SV=1 | 488 | 574 | 4.0E-08 |
| sp|P19531|AMYM_GEOSE | Maltogenic alpha-amylase OS=Geobacillus stearothermophilus GN=amyM PE=1 SV=2 | 477 | 574 | 1.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:2001070 | starch binding | Yes |
| GO:0030247 | polysaccharide binding | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|043320 MRISSAFLWTSLALSWGTYAQSSSVDAYLAAESPIAKAGLLANIGPSGSKSAGAKAGIVIASPSHSDPDYLFTWT RDASLVFAVIIDQYTLGLDTSLRSHIDNFVSSQKIIQQVSNPSGTISTGGLGEPKFNIDETAFTGSWGRPQRDGP ALRANALITWSNHLLKQNNASYVTSTLWPIIKLDLDYIKNTWNQSSFDLWEEVSSSSFFTTAVQHRSLRQGAALA NAIRETSVVADYTKQADNLLCFMQSYWNTGGYMTANTGGGRTGKDANTVLASIHTFDAAAGCDAATFQPCSDRAL ANLVAYVNAFRSIYAINSGVPSNVGIATGRYAEDVYFGGNPWYLTTLAVAEQLYDALIVWKNQGSITVTNLSKPF FSLFSSGISTGTFSSSSSTFNTLITGVQNYADSFVNVVAKHTPSGGGLAEQYSRNDGNPLSAFDLTWSYASLLTA DGARNGVVPASWGAKGLTVPGTCSGNSGPTAHVTFNVNAETVFGENIFVTGSVGALANWSPDNAIALNADNYPIW SVAIDIPASTNVEYKYIRKFNGGVTWESDPNRRFTSPASGSSTLNDVWR* |
| Coding | >Agabi119p4|043320 ATGCGCATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAACCTATGCACAGTCCAGTTCTGTT GATGCATATTTAGCCGCTGAATCTCCGATAGCCAAGGCTGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCGGGTGCTAAAGCAGGAATAGTGATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAATACACGTTGGGCCTGGATACTTCTCTGCGAAGTCAT ATCGATAATTTTGTCTCCTCACAAAAAATTATACAACAAGTGTCTAATCCTTCGGGAACGATTAGTACCGGTGGC CTCGGTGAACCAAAGTTCAACATCGATGAAACGGCTTTCACTGGTTCATGGGGTCGTCCTCAACGAGATGGTCCT GCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAACCACCTTCTTAAACAAAATAACGCGTCCTATGTCACTAGC ACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAATACCTGGAATCAGTCTAGTTTCGACTTGTGG GAAGAAGTGTCATCCTCGTCTTTCTTCACCACCGCTGTGCAACACCGTTCACTCCGCCAAGGCGCAGCATTGGCC AATGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCATGCAGTCA TACTGGAATACAGGAGGTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTC GCTAGTATCCACACCTTCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTG GCTAATCTCGTCGCATACGTTAACGCCTTCCGAAGTATTTATGCCATCAACTCGGGCGTTCCATCAAATGTCGGT ATCGCGACTGGAAGATATGCAGAGGATGTGTATTTCGGTGGGAATCCATGGTACCTGACGACTTTGGCGGTTGCG GAACAACTCTATGATGCTTTGATCGTCTGGAAAAACCAAGGTTCAATCACAGTCACGAATCTATCCAAGCCATTC TTTTCACTCTTCTCGTCTGGCATTTCTACCGGCACTTTTTCTTCTTCTTCCAGCACCTTCAATACTCTGATTACA GGAGTCCAAAACTATGCCGATAGTTTCGTGAATGTCGTTGCGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAG CAGTACAGCCGCAATGACGGGAATCCTCTCAGTGCATTCGATTTGACTTGGAGCTATGCTTCCCTCTTGACGGCT GATGGTGCCAGAAATGGTGTTGTTCCTGCGAGTTGGGGAGCCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGG AACAGTGGACCCACTGCTCATGTCACTTTTAATGTTAATGCTGAAACGGTATTCGGAGAGAATATCTTTGTGACT GGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCTCAATGCAGATAATTATCCCATTTGG AGTGTGGCTATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACGGCGGAGTTACC TGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAACGATGTTTGGCGATAG |
| Transcript | >Agabi119p4|043320 ATGCGCATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAACCTATGCACAGTCCAGTTCTGTT GATGCATATTTAGCCGCTGAATCTCCGATAGCCAAGGCTGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCGGGTGCTAAAGCAGGAATAGTGATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAATACACGTTGGGCCTGGATACTTCTCTGCGAAGTCAT ATCGATAATTTTGTCTCCTCACAAAAAATTATACAACAAGTGTCTAATCCTTCGGGAACGATTAGTACCGGTGGC CTCGGTGAACCAAAGTTCAACATCGATGAAACGGCTTTCACTGGTTCATGGGGTCGTCCTCAACGAGATGGTCCT GCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAACCACCTTCTTAAACAAAATAACGCGTCCTATGTCACTAGC ACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAATACCTGGAATCAGTCTAGTTTCGACTTGTGG GAAGAAGTGTCATCCTCGTCTTTCTTCACCACCGCTGTGCAACACCGTTCACTCCGCCAAGGCGCAGCATTGGCC AATGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCATGCAGTCA TACTGGAATACAGGAGGTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTC GCTAGTATCCACACCTTCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTG GCTAATCTCGTCGCATACGTTAACGCCTTCCGAAGTATTTATGCCATCAACTCGGGCGTTCCATCAAATGTCGGT ATCGCGACTGGAAGATATGCAGAGGATGTGTATTTCGGTGGGAATCCATGGTACCTGACGACTTTGGCGGTTGCG GAACAACTCTATGATGCTTTGATCGTCTGGAAAAACCAAGGTTCAATCACAGTCACGAATCTATCCAAGCCATTC TTTTCACTCTTCTCGTCTGGCATTTCTACCGGCACTTTTTCTTCTTCTTCCAGCACCTTCAATACTCTGATTACA GGAGTCCAAAACTATGCCGATAGTTTCGTGAATGTCGTTGCGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAG CAGTACAGCCGCAATGACGGGAATCCTCTCAGTGCATTCGATTTGACTTGGAGCTATGCTTCCCTCTTGACGGCT GATGGTGCCAGAAATGGTGTTGTTCCTGCGAGTTGGGGAGCCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGG AACAGTGGACCCACTGCTCATGTCACTTTTAATGTTAATGCTGAAACGGTATTCGGAGAGAATATCTTTGTGACT GGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCTCAATGCAGATAATTATCCCATTTGG AGTGTGGCTATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACGGCGGAGTTACC TGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAACGATGTTTGGCGATAG |
| Gene | >Agabi119p4|043320 ATGCGCATTTCTTCAGCATTCCTCTGGACTAGTTTGGCGCTCTCATGGGGAACCTATGCACAGTCCAGTTCTGTT GATGCATATTTAGCCGCTGAATCTCCGATAGCCAAGGCTGGTCTACTTGCCAACATTGGACCTTCTGGTTCCAAG TCAGCGGGTGCTAAAGCAGGAATAGTGATCGCCTCTCCATCACATTCGGACCCTGACTATCTGTTTACCTGGACT CGTGATGCCTCGCTCGTGTTTGCGGTAATCATTGACCAGTAAGTCATCGTACTACGTCGTACGACTATCAAAATT GCAAACTATTGCCAACTAATCAAACATTCAGATACACGTTGGGCCTGGATACTTCTCTGCGAAGTCATATCGATA ATTTTGTCTCCTCACAAAAAATTATACAACAAGTGTCTAATCCTTCGGGAACGATTAGTACCGGTGGCCTCGGTG AACCAAAGTTCAACATCGATGAAACGGCTTTCACTGGTTCATGGGGGTAAGTCGGCCAATTGCACGAACTTTCTG TAATGCTGAATTTCGATTTGATATTTAGTCGTCCTCAACGAGGTTCGTTCTGATTGTTGCGTGTCTGAACAGCGC CTGTGCTGAGAATGATATCTCAGATGGTCCTGCCCTAAGAGCCAATGCTCTCATCACCTGGTCGAACCACCTTCT TAAACAAAATAACGCGTCCTATGTCACTAGCACATTGTGGCCCATCATCAAGCTCGACCTCGACTACATAAAAAA TACCTGGAATCAGTCTAGGTACGTCTCTCATTCTAATGCTTTGATTGTTGGCTCTAAACGATGAATTAGTTTCGA CTTGTGGGAAGAAGTGTCATCCTCGTCTTTCTTCACCACCGCTGTGCAACACCGTTCACTCCGCCAAGGCGCAGC ATTGGCCAATGCAATCCGCGAAACTTCTGTCGTGGCCGATTATACAAAACAAGCGGACAACCTTCTGTGCTTCAT GCAGGTTTGTTTATATTTCGTTGAGTGCAAATGGAAGCATACATTGATCAGTATTTATGCTAGTCATACTGGAAT ACAGGAGGTTATATGACTGCAAACACGGGTGGTGGTCGTACAGGTAAAGATGCAAATACTGTTCTCGCTAGTATC CACACCTTCGATGCTGCTGCTGGTTGCGACGCTGCCACTTTCCAACCTTGCTCTGACCGTGCCCTGGCTAATCTC GTCGCATACGTTAACGCCTTCCGAAGTATTTATGCCATCAACTCGGGCGTTCCATCAAATGTCGGTATCGCGACT GGAAGATATGCAGAGGATGTGTATTTCGGTGGGAATGTATGTTTCTTTCTGAAATCGCATGTTTGTCGTGGCTAA ATCGTCTCAAAGCCATGGTACCTGACGACTTTGGCGGTTGCGGAACAACTCTATGATGCTTTGATCGTCTGGAAA AACCAAGGTTCAATCACAGTCACGAATCTATCCAAGCCATTCTTTTCACTCTTCTCGTCTGGCATTTCTACCGGC ACTTTTTCTTCTTCTTCCAGCACCTTCAATACTCTGATTACAGGAGTCCAAAACTATGCCGATAGTTTCGTGAAT GTCGTTGCGAAGCATACACCCTCTGGTGGAGGCCTTGCTGAGCAGTACAGCCGCAATGACGGGAATCCTCTCAGT GCATTCGATTTGACTTGGAGCTATGCTTCCCTCTTGACGGCTGATGGTGCCAGAAATGGTGTTGTTCCTGCGAGT TGGGGAGCCAAAGGGCTTACCGTGCCCGGAACTTGCTCAGGGAACAGTGGACCCACTGCTCATGTCACTTTTAAT GTTAATGCTGAAACGGTATTCGGAGGTACCTTTTTTCCCTCTCACTTTTACGAACAGGAATGACTCATGACATAT GGAAACAGAGAATATCTTTGTGACTGGCTCCGTTGGCGCTTTGGCAAACTGGTCTCCTGATAACGCAATTGCTCT CAATGCAGATAATTATCCCATTTGGAGTGGTAAGTCCTCAATCCCTCTCCCGCCTTTCGGTGATCCTTTTCGCTA AAGATGTTCCTCTAGTGGCTATTGACATCCCAGCAAGCACGAATGTAGAATATAAATATATTCGCAAGTTCAACG GCGGAGTTACCTGGGAATCGGACCCTAATAGACGGTTCACGTCTCCAGCAAGTGGGAGCTCTACCCTCAACGATG TTTGGCGATAG |