© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|041990 |
| Gene name | |
| Location | scaffold_02:749191..750312 |
| Strand | + |
| Gene length (bp) | 1121 |
| Transcript length (bp) | 1008 |
| Coding sequence length (bp) | 1008 |
| Protein length (aa) | 336 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00642 | zf-CCCH | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 4.1E-09 | 177 | 202 |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 2.0E-07 | 240 | 281 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 2.2E-04 | 241 | 278 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CQ65|CWC24_CRYNB | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC24 PE=3 SV=1 | 4 | 301 | 1.0E-71 |
| sp|P0CQ64|CWC24_CRYNJ | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC24 PE=3 SV=1 | 4 | 301 | 1.0E-71 |
| sp|Q4P400|CWC24_USTMA | Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 | 135 | 318 | 3.0E-70 |
| sp|Q7SDY3|CWC24_NEUCR | Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 | 10 | 300 | 6.0E-54 |
| sp|Q4WUA0|CWC24_ASPFU | Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 | 135 | 300 | 3.0E-53 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P0CQ65|CWC24_CRYNB | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC24 PE=3 SV=1 | 4 | 301 | 1.0E-71 |
| sp|P0CQ64|CWC24_CRYNJ | Pre-mRNA-splicing factor CWC24 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC24 PE=3 SV=1 | 4 | 301 | 1.0E-71 |
| sp|Q4P400|CWC24_USTMA | Pre-mRNA-splicing factor CWC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC24 PE=3 SV=1 | 135 | 318 | 3.0E-70 |
| sp|Q7SDY3|CWC24_NEUCR | Pre-mRNA-splicing factor cwc-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cwc-24 PE=3 SV=1 | 10 | 300 | 6.0E-54 |
| sp|Q4WUA0|CWC24_ASPFU | Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24 PE=3 SV=1 | 135 | 300 | 3.0E-53 |
| sp|Q5AVC5|CWC24_EMENI | Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24 PE=3 SV=1 | 135 | 292 | 4.0E-52 |
| sp|O15541|R113A_HUMAN | RING finger protein 113A OS=Homo sapiens GN=RNF113A PE=1 SV=1 | 4 | 315 | 6.0E-51 |
| sp|Q9P6R8|CWC24_SCHPO | Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf24 PE=1 SV=1 | 7 | 305 | 6.0E-49 |
| sp|Q67ER4|R113A_BOVIN | RING finger protein 113A OS=Bos taurus GN=RNF113A PE=2 SV=1 | 134 | 300 | 1.0E-46 |
| sp|Q8IZP6|R113B_HUMAN | RING finger protein 113B OS=Homo sapiens GN=RNF113B PE=1 SV=3 | 159 | 298 | 3.0E-46 |
| sp|Q8GX84|C3H1_ARATH | Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2 | 54 | 305 | 3.0E-44 |
| sp|Q9FNG6|C3H51_ARATH | Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana GN=At5g06420 PE=2 SV=1 | 161 | 305 | 3.0E-43 |
| sp|Q6K4V3|C3H15_ORYSJ | Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1 | 139 | 302 | 2.0E-41 |
| sp|Q55G16|RN113_DICDI | RING finger protein 113 homolog OS=Dictyostelium discoideum GN=rnf113 PE=3 SV=1 | 134 | 296 | 3.0E-40 |
| sp|Q752S4|CWC24_ASHGO | Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24 PE=3 SV=1 | 167 | 296 | 1.0E-35 |
| sp|P53769|CWC24_YEAST | Pre-mRNA-splicing factor CWC24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CWC24 PE=1 SV=1 | 150 | 300 | 6.0E-35 |
| sp|O17917|RN113_CAEEL | RING finger protein 113 homolog OS=Caenorhabditis elegans GN=rnf-113 PE=2 SV=2 | 159 | 298 | 6.0E-35 |
| sp|Q6CSS6|CWC24_KLULA | Pre-mRNA-splicing factor CWC24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CWC24 PE=3 SV=1 | 166 | 292 | 6.0E-34 |
| sp|Q6FXX1|CWC24_CANGA | Pre-mRNA-splicing factor CWC24 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CWC24 PE=3 SV=1 | 82 | 298 | 1.0E-32 |
| sp|Q6BYU0|CWC24_DEBHA | Pre-mRNA-splicing factor CWC24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CWC24 PE=3 SV=2 | 160 | 285 | 5.0E-31 |
| sp|Q6CB23|CWC24_YARLI | Pre-mRNA-splicing factor CWC24 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CWC24 PE=3 SV=1 | 160 | 285 | 5.0E-30 |
| sp|Q5ACW2|CWC24_CANAL | Pre-mRNA-splicing factor CWC24 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CWC24 PE=3 SV=1 | 169 | 297 | 5.0E-27 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0046872 | metal ion binding | Yes |
| GO:0043169 | cation binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|041990 MASAEQQVNVPFFKKKGRSRPTTARKRSASPPPSAVRPAAVNSATPTTSQVVLPTKKTTTNLLSAGSKRSISQRD DLDDLNASEKDGPDVKWTAEGSHVNAALEILAGDEAEELLAKRIRKEKADAGEEDEIPDDGQYHGQKAYKSHIKK NKEIPKAMRVGPQRSTNTIRTVTITDYQPDVCKDYKETGYCGFGDTCKFLHDRGTYLQGWQLDKLAENSSKQVEN DTDSDDSDDEDIPFACLICRKHYTEPVVTRCGHYYCSACAIKRYAKTPKCVACGTPTGGIFNRADKVIDKMNKKR KEKEERENEDNDADADVQIEGLDEVENKSGSDASD* |
| Coding | >Agabi119p4|041990 ATGGCCTCCGCTGAACAACAAGTCAATGTCCCTTTCTTTAAGAAGAAGGGTAGAAGTCGTCCGACCACTGCTAGG AAACGTTCGGCTTCACCACCGCCCTCAGCAGTACGACCTGCTGCGGTAAACTCTGCTACACCTACCACGTCCCAG GTCGTTCTACCCACCAAAAAGACTACAACAAACCTTCTCAGCGCTGGTTCCAAGCGCTCAATATCACAAAGGGAC GATCTTGATGACCTGAATGCGTCCGAAAAGGATGGGCCCGATGTGAAGTGGACGGCTGAAGGATCACATGTCAAT GCCGCACTAGAGATTCTTGCAGGCGACGAGGCAGAAGAATTACTCGCAAAGCGTATACGTAAAGAAAAGGCGGAT GCCGGAGAAGAGGATGAAATACCCGACGATGGACAGTACCATGGGCAGAAAGCATACAAATCACATATCAAGAAA AACAAGGAAATACCAAAAGCTATGAGAGTTGGTCCTCAGCGAAGTACCAATACGATTCGGACAGTGACCATCACG GATTATCAACCGGATGTTTGCAAGGACTATAAAGAAACAGGCTATTGTGGTTTTGGAGATACTTGCAAATTTTTG CACGATCGTGGAACCTATCTCCAGGGTTGGCAGCTCGACAAGCTGGCTGAGAATTCGAGCAAGCAAGTCGAAAAT GACACCGACTCCGACGATTCCGATGACGAAGACATTCCATTTGCTTGTTTGATATGTCGTAAACACTATACGGAA CCCGTCGTCACCCGCTGTGGTCATTATTATTGTTCCGCTTGTGCCATCAAACGGTACGCAAAAACGCCCAAATGC GTGGCATGTGGTACACCAACGGGGGGAATTTTCAATCGCGCTGATAAAGTCATCGACAAGATGAACAAGAAGCGT AAAGAAAAGGAAGAGAGGGAAAATGAAGATAATGATGCAGACGCGGACGTACAAATTGAAGGATTGGACGAGGTG GAAAATAAATCTGGATCAGACGCTTCCGACTGA |
| Transcript | >Agabi119p4|041990 ATGGCCTCCGCTGAACAACAAGTCAATGTCCCTTTCTTTAAGAAGAAGGGTAGAAGTCGTCCGACCACTGCTAGG AAACGTTCGGCTTCACCACCGCCCTCAGCAGTACGACCTGCTGCGGTAAACTCTGCTACACCTACCACGTCCCAG GTCGTTCTACCCACCAAAAAGACTACAACAAACCTTCTCAGCGCTGGTTCCAAGCGCTCAATATCACAAAGGGAC GATCTTGATGACCTGAATGCGTCCGAAAAGGATGGGCCCGATGTGAAGTGGACGGCTGAAGGATCACATGTCAAT GCCGCACTAGAGATTCTTGCAGGCGACGAGGCAGAAGAATTACTCGCAAAGCGTATACGTAAAGAAAAGGCGGAT GCCGGAGAAGAGGATGAAATACCCGACGATGGACAGTACCATGGGCAGAAAGCATACAAATCACATATCAAGAAA AACAAGGAAATACCAAAAGCTATGAGAGTTGGTCCTCAGCGAAGTACCAATACGATTCGGACAGTGACCATCACG GATTATCAACCGGATGTTTGCAAGGACTATAAAGAAACAGGCTATTGTGGTTTTGGAGATACTTGCAAATTTTTG CACGATCGTGGAACCTATCTCCAGGGTTGGCAGCTCGACAAGCTGGCTGAGAATTCGAGCAAGCAAGTCGAAAAT GACACCGACTCCGACGATTCCGATGACGAAGACATTCCATTTGCTTGTTTGATATGTCGTAAACACTATACGGAA CCCGTCGTCACCCGCTGTGGTCATTATTATTGTTCCGCTTGTGCCATCAAACGGTACGCAAAAACGCCCAAATGC GTGGCATGTGGTACACCAACGGGGGGAATTTTCAATCGCGCTGATAAAGTCATCGACAAGATGAACAAGAAGCGT AAAGAAAAGGAAGAGAGGGAAAATGAAGATAATGATGCAGACGCGGACGTACAAATTGAAGGATTGGACGAGGTG GAAAATAAATCTGGATCAGACGCTTCCGACTGA |
| Gene | >Agabi119p4|041990 ATGGCCTCCGCTGAACAACAAGTCAATGTCCCTTTCTTTAAGAAGAAGGGTAGAAGTCGTCCGACCACTGCTAGG AAACGTTCGGCTTCACCACCGCCCTCAGCAGTACGACCTGCTGCGGTAAACTCTGCTACACCTACCACGTCCCAG GTCGTTCTACCCACCAAAAAGACTACAACAAACCTTCTCAGCGCTGGTTCCAAGCGCTCAATATCACAAAGGGAC GATCTTGATGACCTGAATGCGTCCGAAAAGGATGGGCCCGATGTGAAGTGGACGGCTGAAGGATCACATGTCAAT GCCGCACTAGAGATTCTTGCAGGCGACGAGGCAGAAGAATTACTCGCAAAGCGTATACGTAAAGAAAAGGCGGAT GCCGGAGAAGAGGATGAAATACCCGACGATGGACAGTACCATGGGCAGAAAGCATACAAATCACATATCAAGAAA AACAAGGAAATACCAAAAGCTATGAGAGTTGGTCCTCAGCGAAGTACCAATACGATTCGGACAGTGACCATCACG GATTATCAACCGGATGTTTGCAAGGACTATAAAGGTGCGCGTTTGCCATTGAATTCCTGTACGCGGTGTCATAAC TAAGTGCGCTGCTTTACAGAAACAGGCTATTGTGGTTTTGGAGATACTTGCAAATTTTTGCACGATCGTGGAACC TGTGAGTCTCATTCCACTTTTTAGAGGATGGTACTTACTGATGCATTAATCTAGATCTCCAGGGTTGGCAGCTCG ACAAGCTGGCTGAGAATTCGAGCAAGCAAGTCGAAAATGACACCGACTCCGACGATTCCGATGACGAAGACATTC CATTTGCTTGTTTGATATGTCGTAAACACTATACGGAACCCGTCGTCACCCGCTGTGGTCATTATTATTGTTCCG CTTGTGCCATCAAACGGTACGCAAAAACGCCCAAATGCGTGGCATGTGGTACACCAACGGGGGGAATTTTCAATC GCGCTGATAAAGTCATCGACAAGATGAACAAGAAGCGTAAAGAAAAGGAAGAGAGGGAAAATGAAGATAATGATG CAGACGCGGACGTACAAATTGAAGGATTGGACGAGGTGGAAAATAAATCTGGATCAGACGCTTCCGACTGA |