© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|041650 |
| Gene name | |
| Location | scaffold_02:675900..678945 |
| Strand | + |
| Gene length (bp) | 3045 |
| Transcript length (bp) | 2382 |
| Coding sequence length (bp) | 2382 |
| Protein length (aa) | 794 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04950 | RIBIOP_C | 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal | 2.7E-117 | 473 | 761 |
| PF08142 | AARP2CN | AARP2CN (NUC121) domain | 1.8E-12 | 233 | 304 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13956|TSR1_SCHPO | Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1 | 7 | 767 | 4.0E-168 |
| sp|Q9VP47|TSR1_DROME | Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 | 1 | 771 | 1.0E-144 |
| sp|Q5XGY1|TSR1_XENLA | Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 | 8 | 768 | 1.0E-144 |
| sp|Q5SWD9|TSR1_MOUSE | Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1 | 7 | 768 | 2.0E-142 |
| sp|Q2NL82|TSR1_HUMAN | Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 | 8 | 768 | 5.0E-138 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13956|TSR1_SCHPO | Ribosome biogenesis protein tsr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tsr1 PE=3 SV=1 | 7 | 767 | 4.0E-168 |
| sp|Q9VP47|TSR1_DROME | Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1 | 1 | 771 | 1.0E-144 |
| sp|Q5XGY1|TSR1_XENLA | Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1 | 8 | 768 | 1.0E-144 |
| sp|Q5SWD9|TSR1_MOUSE | Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=1 SV=1 | 7 | 768 | 2.0E-142 |
| sp|Q2NL82|TSR1_HUMAN | Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1 | 8 | 768 | 5.0E-138 |
| sp|Q07381|TSR1_YEAST | Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1 | 4 | 769 | 2.0E-137 |
| sp|Q5R434|TSR1_PONAB | Pre-rRNA-processing protein TSR1 homolog OS=Pongo abelii GN=TSR1 PE=2 SV=1 | 8 | 768 | 2.0E-137 |
| sp|Q19329|TSR1_CAEEL | Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis elegans GN=tag-151 PE=3 SV=1 | 57 | 761 | 6.0E-106 |
| sp|Q61WR2|TSR1_CAEBR | Pre-rRNA-processing protein TSR1 homolog OS=Caenorhabditis briggsae GN=tag-151 PE=3 SV=1 | 57 | 761 | 2.0E-103 |
| sp|Q54YA7|TSR1_DICDI | Pre-rRNA-processing protein TSR1 homolog OS=Dictyostelium discoideum GN=tsr1 PE=3 SV=1 | 458 | 777 | 3.0E-71 |
| sp|O94653|BMS1_SCHPO | Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2 | 538 | 765 | 2.0E-17 |
| sp|Q14692|BMS1_HUMAN | Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1 | 537 | 753 | 2.0E-11 |
| sp|Q08965|BMS1_YEAST | Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1 | 538 | 765 | 2.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0042254 | ribosome biogenesis | Yes |
| GO:0043229 | intracellular organelle | No |
| GO:0022613 | ribonucleoprotein complex biogenesis | No |
| GO:0043226 | organelle | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0008150 | biological_process | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0044085 | cellular component biogenesis | No |
| GO:0009987 | cellular process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|041650 MVEASFHHRPSLKQQNKAFKSKHATRRAIKETAKGKVARTSPKAPTNTVAAQLRLNRRNNAKQVRAKKRSAIVSA TRIFNGVDGAPRIVAVIPLSGDVSPKDTVISFAESLEVSTEDCPEDGLWKMRADRFKTSLQFRPVPYGQYYDALD ACKVADYVVFVLSPTVEVDTWGDTLLRSLQTQGLPEVVSVMAPNTLMDPKSRSGIMKSLLSFMQYFVPTQTKVFD LNVSSDRTNALRTLSEGTPGDPRWRDGRTWVLGEAAEWDDGVLRVTGVVRGAALSANRLMHLPNFGDYQISKIFS APLPRQHSKTNGMDIEPTLIVEPDHDEADSLISSNDPDDMANEQTWPTEEEMNAVSGDGQEHIPDASKGTTPKIV KRIPKGMSEYQAAWIVDETDDEDDGEEGEGGDHEMEEQEEQEEMVDLVIGENKDTESAIQQDADFEDLDLEEEGR QLEKWRNRKREEDDDLQFPDELDTPQDVPARTRFQRYRGLRSFRTSPWDPYENLPRDYARIFQFQDFKRTERSVR RKSEEDNNTVEPGTRVTIHLRDVPEAAAKRGLVILFSLFQHEHKKSVLHFTVQRNTEYDGSVRSKDPMILCVGPR RFVINPIYSQHTRGGGKGPNNVHKFERFFRHGVTNVATTYGPIVYGNQSCMLLRETSNEQAPHLVAMGSFLNPDT TRIIAKRIILTGHPFKVHKKTATVRYMFFNADDVLYFKPIQLHTKHGRTGHIRQSLGTHGYLKAHFDGPINQMDT VCMPLYKRVYPKRSRLWTAGEGGPISLAIHDGALQTVDDAMEE* |
| Coding | >Agabi119p4|041650 ATGGTCGAAGCCAGTTTTCACCACAGACCATCTCTAAAGCAGCAAAATAAAGCATTTAAATCAAAACATGCCACC CGCCGAGCCATAAAGGAGACTGCAAAAGGCAAAGTTGCACGAACTTCGCCAAAAGCTCCTACAAATACTGTAGCG GCACAATTACGATTGAACAGAAGGAATAATGCGAAGCAAGTCAGAGCCAAAAAACGGAGCGCAATCGTCTCTGCT ACGAGAATATTCAACGGTGTGGATGGTGCTCCTCGGATAGTTGCAGTAATACCACTATCGGGCGATGTGAGCCCG AAGGATACGGTGATTTCATTTGCAGAATCATTGGAGGTCTCGACAGAGGATTGTCCAGAAGATGGGTTATGGAAG ATGCGAGCTGACCGGTTCAAAACGTCATTGCAATTTCGTCCAGTACCTTATGGACAATATTATGATGCCCTAGAT GCCTGCAAAGTCGCAGATTATGTTGTTTTTGTTCTTTCCCCCACTGTCGAAGTAGATACTTGGGGTGACACGCTC CTTCGGTCCCTTCAAACTCAAGGCCTACCGGAAGTCGTTAGTGTTATGGCACCTAACACTCTCATGGATCCAAAA TCTCGTTCGGGTATCATGAAATCTCTACTGTCCTTCATGCAATATTTTGTGCCCACACAAACCAAAGTGTTTGAT TTGAACGTGAGTTCTGATCGGACAAACGCTTTGCGCACCCTTTCTGAAGGAACACCGGGTGATCCCCGTTGGAGA GATGGAAGAACATGGGTACTTGGAGAGGCTGCTGAGTGGGACGATGGGGTGCTAAGAGTTACAGGTGTCGTCCGT GGAGCCGCGCTGTCTGCGAACAGACTTATGCATCTGCCCAACTTCGGCGATTATCAGATCTCAAAGATATTTTCC GCCCCTTTACCCCGTCAACATAGCAAAACTAATGGGATGGATATTGAACCGACCCTGATAGTAGAACCTGATCAT GACGAAGCTGATTCTCTCATATCGAGCAACGATCCAGATGATATGGCTAATGAGCAAACCTGGCCAACGGAGGAA GAAATGAATGCTGTGTCTGGCGACGGTCAAGAACATATACCGGACGCATCGAAAGGAACAACACCAAAGATCGTG AAGCGAATACCAAAGGGTATGAGTGAATATCAAGCTGCGTGGATCGTAGATGAGACAGATGACGAAGACGATGGA GAGGAGGGAGAGGGAGGCGATCATGAGATGGAGGAGCAGGAAGAACAAGAGGAAATGGTCGACCTTGTCATTGGC GAAAATAAGGACACAGAATCGGCGATCCAGCAAGACGCTGATTTTGAAGACCTGGATCTTGAAGAGGAAGGAAGA CAGCTGGAAAAGTGGCGGAATCGGAAACGCGAAGAGGACGATGATCTACAATTCCCAGATGAACTTGATACCCCT CAGGATGTTCCCGCCCGGACGCGTTTTCAAAGATATCGCGGTTTGCGCTCATTTAGAACAAGTCCCTGGGATCCT TATGAAAACCTTCCCCGGGATTATGCGCGAATATTTCAGTTTCAAGATTTCAAACGCACGGAACGTAGCGTTCGT AGGAAATCAGAGGAGGACAACAACACCGTTGAGCCTGGCACCCGAGTAACTATTCATCTTCGCGACGTGCCCGAG GCAGCAGCGAAGCGGGGACTTGTGATCCTATTTTCCCTGTTCCAGCACGAGCACAAGAAATCAGTTCTCCACTTC ACTGTCCAAAGAAATACCGAATACGACGGATCTGTGCGGTCAAAGGATCCCATGATCTTGTGTGTAGGCCCACGC CGTTTCGTCATCAATCCGATATACAGTCAACACACGCGTGGTGGTGGCAAAGGCCCAAATAACGTCCATAAATTC GAGCGCTTTTTCCGTCACGGTGTAACGAACGTTGCAACGACGTATGGCCCTATTGTATATGGCAATCAATCGTGT ATGTTACTCAGAGAGACGTCCAATGAACAAGCTCCGCACCTTGTGGCCATGGGTAGCTTCTTGAATCCAGACACT ACGCGGATTATAGCCAAACGAATCATCCTCACTGGTCATCCATTCAAGGTGCACAAGAAGACGGCGACAGTCCGG TACATGTTCTTCAATGCAGATGACGTCCTCTATTTCAAACCAATCCAGCTACATACAAAACATGGTCGAACAGGT CATATCCGCCAATCACTTGGAACGCATGGCTACTTGAAAGCTCATTTCGATGGGCCTATCAATCAAATGGACACT GTCTGTATGCCTCTCTACAAACGCGTCTATCCAAAGCGGTCGCGTCTTTGGACAGCTGGAGAAGGCGGGCCGATA AGCCTTGCTATCCACGATGGTGCCCTTCAAACTGTAGATGACGCCATGGAAGAGTAG |
| Transcript | >Agabi119p4|041650 ATGGTCGAAGCCAGTTTTCACCACAGACCATCTCTAAAGCAGCAAAATAAAGCATTTAAATCAAAACATGCCACC CGCCGAGCCATAAAGGAGACTGCAAAAGGCAAAGTTGCACGAACTTCGCCAAAAGCTCCTACAAATACTGTAGCG GCACAATTACGATTGAACAGAAGGAATAATGCGAAGCAAGTCAGAGCCAAAAAACGGAGCGCAATCGTCTCTGCT ACGAGAATATTCAACGGTGTGGATGGTGCTCCTCGGATAGTTGCAGTAATACCACTATCGGGCGATGTGAGCCCG AAGGATACGGTGATTTCATTTGCAGAATCATTGGAGGTCTCGACAGAGGATTGTCCAGAAGATGGGTTATGGAAG ATGCGAGCTGACCGGTTCAAAACGTCATTGCAATTTCGTCCAGTACCTTATGGACAATATTATGATGCCCTAGAT GCCTGCAAAGTCGCAGATTATGTTGTTTTTGTTCTTTCCCCCACTGTCGAAGTAGATACTTGGGGTGACACGCTC CTTCGGTCCCTTCAAACTCAAGGCCTACCGGAAGTCGTTAGTGTTATGGCACCTAACACTCTCATGGATCCAAAA TCTCGTTCGGGTATCATGAAATCTCTACTGTCCTTCATGCAATATTTTGTGCCCACACAAACCAAAGTGTTTGAT TTGAACGTGAGTTCTGATCGGACAAACGCTTTGCGCACCCTTTCTGAAGGAACACCGGGTGATCCCCGTTGGAGA GATGGAAGAACATGGGTACTTGGAGAGGCTGCTGAGTGGGACGATGGGGTGCTAAGAGTTACAGGTGTCGTCCGT GGAGCCGCGCTGTCTGCGAACAGACTTATGCATCTGCCCAACTTCGGCGATTATCAGATCTCAAAGATATTTTCC GCCCCTTTACCCCGTCAACATAGCAAAACTAATGGGATGGATATTGAACCGACCCTGATAGTAGAACCTGATCAT GACGAAGCTGATTCTCTCATATCGAGCAACGATCCAGATGATATGGCTAATGAGCAAACCTGGCCAACGGAGGAA GAAATGAATGCTGTGTCTGGCGACGGTCAAGAACATATACCGGACGCATCGAAAGGAACAACACCAAAGATCGTG AAGCGAATACCAAAGGGTATGAGTGAATATCAAGCTGCGTGGATCGTAGATGAGACAGATGACGAAGACGATGGA GAGGAGGGAGAGGGAGGCGATCATGAGATGGAGGAGCAGGAAGAACAAGAGGAAATGGTCGACCTTGTCATTGGC GAAAATAAGGACACAGAATCGGCGATCCAGCAAGACGCTGATTTTGAAGACCTGGATCTTGAAGAGGAAGGAAGA CAGCTGGAAAAGTGGCGGAATCGGAAACGCGAAGAGGACGATGATCTACAATTCCCAGATGAACTTGATACCCCT CAGGATGTTCCCGCCCGGACGCGTTTTCAAAGATATCGCGGTTTGCGCTCATTTAGAACAAGTCCCTGGGATCCT TATGAAAACCTTCCCCGGGATTATGCGCGAATATTTCAGTTTCAAGATTTCAAACGCACGGAACGTAGCGTTCGT AGGAAATCAGAGGAGGACAACAACACCGTTGAGCCTGGCACCCGAGTAACTATTCATCTTCGCGACGTGCCCGAG GCAGCAGCGAAGCGGGGACTTGTGATCCTATTTTCCCTGTTCCAGCACGAGCACAAGAAATCAGTTCTCCACTTC ACTGTCCAAAGAAATACCGAATACGACGGATCTGTGCGGTCAAAGGATCCCATGATCTTGTGTGTAGGCCCACGC CGTTTCGTCATCAATCCGATATACAGTCAACACACGCGTGGTGGTGGCAAAGGCCCAAATAACGTCCATAAATTC GAGCGCTTTTTCCGTCACGGTGTAACGAACGTTGCAACGACGTATGGCCCTATTGTATATGGCAATCAATCGTGT ATGTTACTCAGAGAGACGTCCAATGAACAAGCTCCGCACCTTGTGGCCATGGGTAGCTTCTTGAATCCAGACACT ACGCGGATTATAGCCAAACGAATCATCCTCACTGGTCATCCATTCAAGGTGCACAAGAAGACGGCGACAGTCCGG TACATGTTCTTCAATGCAGATGACGTCCTCTATTTCAAACCAATCCAGCTACATACAAAACATGGTCGAACAGGT CATATCCGCCAATCACTTGGAACGCATGGCTACTTGAAAGCTCATTTCGATGGGCCTATCAATCAAATGGACACT GTCTGTATGCCTCTCTACAAACGCGTCTATCCAAAGCGGTCGCGTCTTTGGACAGCTGGAGAAGGCGGGCCGATA AGCCTTGCTATCCACGATGGTGCCCTTCAAACTGTAGATGACGCCATGGAAGAGTAG |
| Gene | >Agabi119p4|041650 ATGGTCGAAGCCAGTTTTCACCACAGACCATCTCTAAAGCAGGTACAGGGCATACTCACTCTTTCGCGTGGCTGG GCTGATATAATTCGCTTCATTAGCAAAATAAAGCATTTAAATCAAAACATGCCACCCGCCGAGCCATAAAGGAGA CTGCAAAAGGTACGTAGATCACTAAATGCATCCAATGAGTCATAAATAGTTTATGGGGGAAAAAAAATAGGCAAA GTTGCACGAACTTCGCCAAAAGCTCCTACAAATACTGTAGCGGCACAATTACGATTGAACAGAAGGAATAATGCG AAGCAAGTCAGAGCCAAAAAACGGAGCGCAATCGTCTCTGCTACGAGAATATTCAACGGTGTGGATGGTGCTCCT CGGATAGTTGCAGTAATACCACTATCGGGCGATGTGAGCCCGAAGGATACGGTGATTTCATTTGCAGAATCATTG GAGGTCTCGACAGAGGATTGTCCAGAAGATGGGTTATGGAAGATGCGGTGAGTTCAAACTCAATCTCATTTTTTC CTTTCCTCTTACTTTGTTATCCCAGAGCTGACCGGTTCAAAACGTCATTGCAATTTCGTCCAGTACCTTATGGAC AATATTATGATGCCCTAGATGCCTGCAAAGTCGCAGATTATGTTGTTTTTGTTCTTTCCCCCACTGTCGAAGTAG ATACTTGGGGTGACACGCTCCTTCGGTCCCTTCAAACTCAAGGCCTACCGGAAGTCGTTAGTGTTATGGCACCTA ACACTCTCATGGATCCAAAATCTCGTTCGGGTATCATGAAATCTCTACTGTCCTTCATGCAATATTTTGTGCCCA CACAAACCAAAGTGTTTGATTTGAACGTGAGTTCTGATCGGACAAACGCTTTGCGCACCCTTTCTGAAGGAACAC CGGGTGATCCCCGTTGGAGAGATGGAAGAACATGGGTACTTGGAGAGGCTGCTGAGTGGGACGATGGGGTGCTAA GAGTTACAGGTGTCGTCCGTGGAGCCGCGCTGTCTGCGAACAGACTTATGCATCTGCCCAACTTCGGCGATTATC AGATCTCAAAGGTCAGAACTTGATCTTCCATTCATTTCAAATTGAGGTATTGATGAACTTTTGTCAGATATTTTC CGCCCCTTTACCCCGTCAACATAGCAAAACTAATGGGATGGATATTGAACCGACCCTGATAGTAGAACCTGATCA TGACGAAGCTGATTCTCTCATATCGAGCAACGATCCAGATGATATGGCTAATGAGCAAACCTGGCCAACGGAGGA AGAAATGAATGCTGTGTCTGGCGACGGTCAAGAACATATACCGGACGCATCGAAAGGAACAACACCAAAGATCGT GAAGCGAATACCAAAGGGTATGAGTGAATATCAAGCTGCGTGGATCGTAGATGAGACAGATGACGAAGACGATGG AGAGGAGGGAGAGGGAGGCGATCATGAGATGGAGGAGCAGGAAGAACAAGAGGAAATGGTCGACCTTGTCATTGG CGAAAATAAGGACACAGAATCGGCGATCCAGCAAGACGCTGATTTTGAAGACCTGGATCTTGAAGAGGAAGGAAG ACAGTGCGTATTTCATCAACGTCCCGATGACTACACACCATATTCACACATTGCGCATATCTCAGGCTGGAAAAG TGGCGGAATCGGAAACGCGAAGAGGACGATGATCTACAATTCCCAGATGAACTTGATACCCCTCAGGATGTTCCC GCCCGGACGCGTTTTCAAAGATATCGCGGTTTGCGCTCATTTAGAACAAGTCCCTGGGATCCTTATGAAAACCTT CCCCGGGATTATGCGCGAATATTTCAGTTTCAAGATTTCAAACGCACGGAACGTAGCGTTCGTAGGAAATCAGAG GAGGACAACAACACCGTTGAGGTGGGTTCAATCTTGATGTGTCCAAACATTATCTGACTTGCCTTGTAGCCTGGC ACCCGAGTAACTATTCATCTTCGCGACGTGCCCGAGGCAGCAGCGAAGCGGGGACTTGTGATCCTATTTTCCCTG TTCCAGCACGAGCACAAGAAATCAGTTCTCCACTTCACTGTCCAAAGAAATACCGAATACGACGGATCTGTGCGG TCAAAGGTACATTCAGCCAGCCCTGGAGAGAATTGCAATTGAACTTTTTTCACTACAGGATCCCATGATCTTGTG TGTAGGCCCACGCCGTTTCGTCATCAATCCGATATACAGTCAACACACGCGTGGTGGTGGCAAAGGCCCAAATAA CGTCCATAAATTCGAGCGCTTTTTCCGTCACGGTGTAACGAACGTTGCAACGACGTATGGCCCTATTGTATATGG CAATCAATCGTGTATGTTACTCAGAGAGACGTCCAATGAACAAGGTTCGTCTTACCTCTCCACTGCTCTGGTACA ACAAGGTTACATATGGAGCACTCTTATTTTTGCGACCAAACTTTATTAATCGAACTTCGACCTCGCACGACAGCT CCGCACCTTGTGGCCATGGGTAGCTTCTTGAATCCAGACACTACGCGGATTATAGCCAAACGAATCATCCTCACT GGTCATCCATTCAAGGTGCACAAGAAGACGGCGACAGTCCGGTACATGTTCTTCAATGCAGGTACATACATTATC CTTTTCTATATCTGTTCAGTCCCCGCCCTTCACCTGGGCCTCTCCCGAGAGTAGGCTTTTGGGGTGGCGCCAAGC TTATATCATAATTCCTCACAACTACTCCTGAGCTCATATTATTGGCTTTGAACCGTTTCTGATATCCTTTTCTGG TCCACAGATGACGTCCTCTATTTCAAACCAATCCAGCTACATACAAAACATGGTCGAACAGGTCATATCCGCCAA TCACTTGGAACGCATGGCTACTTGAAAGCTCATTTCGATGGGCCTATCAATCAAATGGACACTGTCTGTATGCCT CTCTACAAACGCGTCTATCCAAAGCGGTCGCGTCTTTGGACAGCTGGAGAAGGCGGGCCGATAAGCCTTGCTATC CACGATGGTGCCCTTCAAACTGTAGATGACGCCATGGAAGAGTAG |