© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Agabi119p4|041480 |
| Gene name | |
| Location | scaffold_02:640511..641820 |
| Strand | - |
| Gene length (bp) | 1309 |
| Transcript length (bp) | 1029 |
| Coding sequence length (bp) | 1029 |
| Protein length (aa) | 343 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 4.5E-19 | 28 | 177 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 2.7E-14 | 34 | 158 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 11 | 240 | 2.0E-23 |
| sp|Q96NR8|RDH12_HUMAN | Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | 5 | 295 | 2.0E-22 |
| sp|Q9NZC7|WWOX_HUMAN | WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | 11 | 328 | 9.0E-22 |
| sp|Q6UX07|DHR13_HUMAN | Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 | 11 | 301 | 1.0E-21 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 11 | 328 | 2.0E-21 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q5F389|WWOX_CHICK | WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | 11 | 240 | 2.0E-23 |
| sp|Q96NR8|RDH12_HUMAN | Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3 | 5 | 295 | 2.0E-22 |
| sp|Q9NZC7|WWOX_HUMAN | WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | 11 | 328 | 9.0E-22 |
| sp|Q6UX07|DHR13_HUMAN | Dehydrogenase/reductase SDR family member 13 OS=Homo sapiens GN=DHRS13 PE=2 SV=1 | 11 | 301 | 1.0E-21 |
| sp|Q5R9W5|WWOX_PONAB | WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | 11 | 328 | 2.0E-21 |
| sp|P59837|RDH12_BOVIN | Retinol dehydrogenase 12 OS=Bos taurus GN=RDH12 PE=2 SV=1 | 5 | 295 | 2.0E-20 |
| sp|Q91WL8|WWOX_MOUSE | WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | 11 | 310 | 3.0E-20 |
| sp|Q8NBN7|RDH13_HUMAN | Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | 22 | 335 | 3.0E-20 |
| sp|Q8CEE7|RDH13_MOUSE | Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=1 SV=1 | 22 | 250 | 4.0E-20 |
| sp|Q9ERI6|RDH14_MOUSE | Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1 | 25 | 301 | 9.0E-20 |
| sp|Q9VLU5|WWOX_DROME | WW domain-containing oxidoreductase OS=Drosophila melanogaster GN=Wwox PE=2 SV=1 | 24 | 303 | 2.0E-19 |
| sp|Q5SS80|DHR13_MOUSE | Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1 | 24 | 314 | 6.0E-19 |
| sp|Q8BYK4|RDH12_MOUSE | Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1 | 22 | 250 | 1.0E-18 |
| sp|O74959|YJCD_SCHPO | Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1 | 24 | 321 | 2.0E-18 |
| sp|Q17QU7|DHR13_BOVIN | Dehydrogenase/reductase SDR family member 13 OS=Bos taurus GN=DHRS13 PE=2 SV=1 | 11 | 301 | 2.0E-18 |
| sp|Q9HBH5|RDH14_HUMAN | Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1 | 4 | 301 | 2.0E-18 |
| sp|Q8TC12|RDH11_HUMAN | Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | 24 | 253 | 2.0E-17 |
| sp|Q803A8|WWOX_DANRE | WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1 | 24 | 297 | 5.0E-17 |
| sp|Q9QYF1|RDH11_MOUSE | Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=1 SV=2 | 22 | 253 | 1.0E-16 |
| sp|Q8VBZ0|DHRSX_MOUSE | Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2 | 28 | 325 | 3.0E-13 |
| sp|Q8N5I4|DHRSX_HUMAN | Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2 | 27 | 294 | 9.0E-13 |
| sp|Q8K354|CBR3_MOUSE | Carbonyl reductase [NADPH] 3 OS=Mus musculus GN=Cbr3 PE=1 SV=1 | 28 | 283 | 3.0E-12 |
| sp|P48758|CBR1_MOUSE | Carbonyl reductase [NADPH] 1 OS=Mus musculus GN=Cbr1 PE=1 SV=3 | 30 | 246 | 6.0E-11 |
| sp|O75828|CBR3_HUMAN | Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3 | 28 | 283 | 9.0E-11 |
| sp|A2RVM0|TIC32_ARATH | Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | 29 | 314 | 9.0E-11 |
| sp|Q28960|CBR1_PIG | Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3 | 28 | 246 | 1.0E-10 |
| sp|Q6RVV4|TIC32_PEA | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | 29 | 278 | 2.0E-10 |
| sp|A6QP05|DHR12_BOVIN | Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1 | 17 | 278 | 3.0E-10 |
| sp|Q92247|BLI4_NEUCR | Putative oxidoreductase bli-4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bli-4 PE=1 SV=1 | 24 | 245 | 9.0E-10 |
| sp|P35320|OXIR_STRLI | Probable oxidoreductase OS=Streptomyces lividans PE=3 SV=1 | 24 | 261 | 5.0E-09 |
| sp|Q8MI29|CBR1_MACFA | Carbonyl reductase [NADPH] 1 OS=Macaca fascicularis GN=CBR1 PE=2 SV=1 | 28 | 278 | 6.0E-09 |
| sp|P16152|CBR1_HUMAN | Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3 | 30 | 301 | 9.0E-09 |
| sp|Q5RCU5|CBR1_PONAB | Carbonyl reductase [NADPH] 1 OS=Pongo abelii GN=CBR1 PE=2 SV=3 | 30 | 301 | 1.0E-08 |
| sp|Q03326|OXIR_STRAT | Probable oxidoreductase OS=Streptomyces antibioticus PE=3 SV=1 | 24 | 261 | 2.0E-08 |
| sp|Q3SZD7|CBR1_BOVIN | Carbonyl reductase [NADPH] 1 OS=Bos taurus GN=CBR1 PE=2 SV=1 | 30 | 246 | 2.0E-08 |
| sp|O80333|POR_MARPA | Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1 | 18 | 172 | 3.0E-08 |
| sp|Q39617|POR_CHLRE | Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1 | 9 | 141 | 4.0E-08 |
| sp|Q9ZUH5|SDR2B_ARATH | Short-chain dehydrogenase/reductase 2b OS=Arabidopsis thaliana GN=SDR2b PE=2 SV=1 | 30 | 246 | 8.0E-08 |
| sp|Q42536|PORA_ARATH | Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 | 25 | 151 | 2.0E-07 |
| sp|P47844|CBR1_RABIT | Carbonyl reductase [NADPH] 1 OS=Oryctolagus cuniculus GN=CBR1 PE=2 SV=2 | 28 | 246 | 3.0E-07 |
| sp|Q8W3D9|PORB_ORYSJ | Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1 | 18 | 151 | 7.0E-07 |
| sp|A0PJE2|DHR12_HUMAN | Dehydrogenase/reductase SDR family member 12 OS=Homo sapiens GN=DHRS12 PE=2 SV=2 | 17 | 275 | 7.0E-07 |
| sp|Q9M2E2|SDR1_ARATH | (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1 | 30 | 246 | 1.0E-06 |
| sp|O48741|PORC_ARATH | Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 | 18 | 141 | 1.0E-06 |
| sp|P47727|CBR1_RAT | Carbonyl reductase [NADPH] 1 OS=Rattus norvegicus GN=Cbr1 PE=1 SV=2 | 30 | 246 | 3.0E-06 |
| sp|Q41249|PORA_CUCSA | Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 | 17 | 141 | 9.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|041480 MGRRSFFGFLYDQLHRVPDVIQTDLKDKTAVVIGANTGIGFQAAQHFARMNTGRLILACRSEKRGQAAVDRLKVA TGYSKAELWLVDLSAFSSVQAFADWTVKDLERLDILLLNAAVLHREDGSYTTTRDGWETTLHVNDLSFTLLSFLL LPLMVDTAKKFNTHPRLVTVTSELHFMTSFEDKIFESPNAIEFMSDKDYCTPQIMKTRYPDTKLLNVFFTRALSN RSKHQPVVFNCVNPGFCRSELLRDSKGMVIRLMSLLLAWSAEEGSRQLIWAAIGLPESGSLDEMRGAYINRASIE EPSDFVLGEEGKKREDKLYADTISIIQKVDPRVKEIESQYLI* |
| Coding | >Agabi119p4|041480 ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCATCGAGTTCCCGATGTCATTCAGACAGATCTC AAGGACAAGACGGCGGTCGTCATCGGCGCCAATACTGGTATTGGTTTTCAAGCTGCTCAACACTTCGCGAGAATG AATACTGGAAGACTTATTCTTGCTTGTCGCAGCGAGAAGAGGGGCCAAGCAGCTGTGGATCGTTTGAAAGTAGCC ACTGGCTATTCCAAGGCAGAATTGTGGTTGGTTGATCTTTCTGCATTCTCGTCCGTCCAAGCATTCGCCGATTGG ACTGTGAAAGACCTAGAGAGGTTGGATATTCTATTGTTAAATGCTGCTGTTCTACATCGAGAAGATGGATCATAT ACCACAACTAGAGATGGATGGGAGACAACACTCCACGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTG CTCCCTCTTATGGTTGACACCGCCAAGAAGTTTAACACACATCCAAGGCTCGTCACCGTCACAAGCGAGCTTCAC TTCATGACAAGCTTCGAGGATAAAATATTTGAAAGTCCCAATGCAATCGAGTTCATGAGCGACAAAGATTACTGT ACGCCCCAAATCATGAAAACTCGTTATCCTGATACGAAGCTTTTGAATGTATTTTTCACTCGCGCTCTCAGCAAC CGATCGAAACACCAACCTGTTGTCTTCAATTGTGTTAACCCTGGCTTTTGTCGTTCCGAACTCCTCAGAGATTCG AAGGGCATGGTTATCAGACTGATGTCATTGTTATTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCTAATCTGG GCTGCTATCGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACATCAACAGAGCGAGCATAGAA GAGCCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGCCGACACGATTTCTATC ATTCAAAAAGTGGATCCGCGCGTGAAAGAGATAGAGTCGCAGTATTTGATCTAA |
| Transcript | >Agabi119p4|041480 ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCATCGAGTTCCCGATGTCATTCAGACAGATCTC AAGGACAAGACGGCGGTCGTCATCGGCGCCAATACTGGTATTGGTTTTCAAGCTGCTCAACACTTCGCGAGAATG AATACTGGAAGACTTATTCTTGCTTGTCGCAGCGAGAAGAGGGGCCAAGCAGCTGTGGATCGTTTGAAAGTAGCC ACTGGCTATTCCAAGGCAGAATTGTGGTTGGTTGATCTTTCTGCATTCTCGTCCGTCCAAGCATTCGCCGATTGG ACTGTGAAAGACCTAGAGAGGTTGGATATTCTATTGTTAAATGCTGCTGTTCTACATCGAGAAGATGGATCATAT ACCACAACTAGAGATGGATGGGAGACAACACTCCACGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTG CTCCCTCTTATGGTTGACACCGCCAAGAAGTTTAACACACATCCAAGGCTCGTCACCGTCACAAGCGAGCTTCAC TTCATGACAAGCTTCGAGGATAAAATATTTGAAAGTCCCAATGCAATCGAGTTCATGAGCGACAAAGATTACTGT ACGCCCCAAATCATGAAAACTCGTTATCCTGATACGAAGCTTTTGAATGTATTTTTCACTCGCGCTCTCAGCAAC CGATCGAAACACCAACCTGTTGTCTTCAATTGTGTTAACCCTGGCTTTTGTCGTTCCGAACTCCTCAGAGATTCG AAGGGCATGGTTATCAGACTGATGTCATTGTTATTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCTAATCTGG GCTGCTATCGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACATCAACAGAGCGAGCATAGAA GAGCCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGCCGACACGATTTCTATC ATTCAAAAAGTGGATCCGCGCGTGAAAGAGATAGAGTCGCAGTATTTGATCTAA |
| Gene | >Agabi119p4|041480 ATGGGCAGGAGAAGTTTCTTCGGCTTCCTCTATGATCAACTTCATCGAGTTCCCGATGTCATTCAGACAGATCTC AAGGACAAGACGGCGGTCGTCATCGGCGCCAATACTGGTATTGGTTTTCAAGCTGCTCAACACTTCGCGAGAATG AATACTGGAAGACTTATTCTTGCTTGTCGCAGCGAGAAGAGGGGCCAAGCAGCTGTGGATCGTCAGTGCATTATG TCTTGTTCTCGGTTTTTGACTAGTCGATTAATACGCATGATCCAGGTTTGAAAGTAGCCACTGGCTATTCCAAGG CAGAATTGTGGTTGGTTGATCTTTCTGCATTCTCGTCCGTCCAAGCATTCGCCGATTGGACTGTGAAAGACCTAG AGAGGTTGGATATTCTATTGTTAAATGCTGCTGTTCTACATCGAGAAGATGGATCATATACCACAACTAGAGATG GATGGGAGACAACGTACGTGTTCATCTACCAAATCATGAAGGAACGTTAACGGTTGAATATGTCCAACTAGACTC CACGTGAACGACCTTTCTTTCACATTGCTCTCTTTTTTGTTGCTCCCTCTTATGGTTGACACCGCCAAGAAGTTT AACACACATCCAAGGCTCGTCACCGTCACAAGCGAGCTTCACTTCATGACAAGCTTCGAGGATAAAATATTTGAA AGTCCCAATGCAATCGAGTTCATGAGCGACAAAGATTACTGTACGCCCCAGTGAGCTGGCATGTAAAACGTTGAC TCGGCAAATAACTGATAACGAACAAGAATCATGAAAACTCGTTATCCTGATACGAAGCGTGAGTTGTTCCCTACA TTCATTGGACCTTGCGTTGTTGATATTCTATTGCTAGTTTTGAATGTATTTTTCACTCGCGCTCTCAGCAACCGA TCGAAACACCAACCTGTTGTCTTCAATTGTGTTAACCCTGGCTTTTGTCGTTCCGAACTCCTCAGAGATTCGAAG GGCATGGTTATCAGACTGATGTCATTGTTATTAGCCTGGAGTGCTGAAGAGGGTAGTCGCCAGCTAATCTGGGCT GCTATCGGCCTTCCGGAGAGTGGGTCCTTGGATGAAATGAGAGGCGCATACATCAACAGAGCGAGCATAGAAGAG CCTTCAGATTTTGTCCTTGGGGAAGAAGGTAAGAAAAGAGAAGATAAGTTATATGTGAGTTCAAATCAAATGCTT CGTATGTCAACATTATTGACAATACAATTTTCGGCAGGCCGACACGATTTCTATCATTCAAAAAGTGGATCCGCG CGTGAAAGAGATAGAGTCGCAGTATTTGATCTAA |