Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|040710
Gene name
Locationscaffold_02:498403..498738
Strand-
Gene length (bp)335
Transcript length (bp)282
Coding sequence length (bp)282
Protein length (aa) 94

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 1.4E-08 8 63

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 3 85 4.0E-10
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 4 76 4.0E-09
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 4 76 1.0E-08
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 4 76 1.0E-08
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 2 76 4.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|A2BIG9|LSMD1_DANRE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio GN=naa38 PE=3 SV=1 3 85 4.0E-10
sp|Q6NU60|LMD1B_XENLA N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-b PE=3 SV=1 4 76 4.0E-09
sp|A4IGZ4|LSMD1_XENTR N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 4 76 1.0E-08
sp|Q6GQ67|LMD1A_XENLA N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 4 76 1.0E-08
sp|Q9D2U5|LSMD1_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 2 76 4.0E-08
sp|Q9BRA0|LSMD1_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 2 76 5.0E-08
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|040710
MSSSAIAKLNSLLCQPIRISTTDNRILIGTFAGTDKPLNIIITNAEEYRIDGSEQLPQGRYVSLVMVPWKLIASI
EAPGRWFDTSASSSSMYI*
Coding >Agabi119p4|040710
ATGTCGTCCTCCGCCATCGCGAAACTGAATTCGCTGCTCTGCCAGCCCATCCGAATTTCAACCACAGATAACCGC
ATTCTCATTGGCACCTTTGCTGGAACAGACAAGCCTCTCAACATCATCATTACTAATGCTGAAGAATACAGAATT
GACGGCTCCGAACAACTTCCACAAGGTCGATATGTGAGCCTTGTGATGGTCCCCTGGAAACTTATCGCCTCCATC
GAAGCACCCGGTCGATGGTTCGACACATCAGCGTCCTCTTCGTCCATGTATATTTAG
Transcript >Agabi119p4|040710
ATGTCGTCCTCCGCCATCGCGAAACTGAATTCGCTGCTCTGCCAGCCCATCCGAATTTCAACCACAGATAACCGC
ATTCTCATTGGCACCTTTGCTGGAACAGACAAGCCTCTCAACATCATCATTACTAATGCTGAAGAATACAGAATT
GACGGCTCCGAACAACTTCCACAAGGTCGATATGTGAGCCTTGTGATGGTCCCCTGGAAACTTATCGCCTCCATC
GAAGCACCCGGTCGATGGTTCGACACATCAGCGTCCTCTTCGTCCATGTATATTTAG
Gene >Agabi119p4|040710
ATGTCGTCCTCCGCCATCGCGAAACTGAATTCGCTGCTCTGCCAGCCCATCCGAATTTCAACCACAGATAACCGC
ATTCTCATTGGCACCTTTGCTGGAACAGACAAGCCTCTCAACATCATCATTACTAATGCTGAAGAATACAGGTGA
TCATTTATGCCTTCCAGCCTAAACTTTTCCCTCATCGTTATTGTTGCAGAATTGACGGCTCCGAACAACTTCCAC
AAGGTCGATATGTGAGCCTTGTGATGGTCCCCTGGAAACTTATCGCCTCCATCGAAGCACCCGGTCGATGGTTCG
ACACATCAGCGTCCTCTTCGTCCATGTATATTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail