Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|037670
Gene name
Locationscaffold_13:1057732..1060635
Strand-
Gene length (bp)2903
Transcript length (bp)1581
Coding sequence length (bp)1581
Protein length (aa) 527

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02055 Glyco_hydro_30 Glycosyl hydrolase family 30 TIM-barrel domain 7.7E-25 68 329
PF02057 Glyco_hydro_59 Glycosyl hydrolase family 59 2.0E-13 77 325

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q7M4T0|NEG1_NEUCR Endo-1,6-beta-D-glucanase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=neg-1 PE=1 SV=2 56 428 3.0E-39
sp|Q4WBR2|NEG1_ASPFU Endo-1,6-beta-D-glucanase neg1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=neg1 PE=1 SV=1 56 410 7.0E-36
sp|Q8J0I9|GUN16_TRIHA Endo-1,6-beta-D-glucanase BGN16.3 OS=Trichoderma harzianum PE=1 SV=1 55 403 8.0E-34
sp|O16581|GLCM2_CAEEL Putative glucosylceramidase 2 OS=Caenorhabditis elegans GN=gba-2 PE=3 SV=2 58 407 7.0E-22
sp|G5ECR8|GLCM3_CAEEL Putative glucosylceramidase 3 OS=Caenorhabditis elegans GN=gba-3 PE=3 SV=1 56 416 1.0E-20
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Swissprot ID Swissprot Description Start End E-value
sp|Q7M4T0|NEG1_NEUCR Endo-1,6-beta-D-glucanase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=neg-1 PE=1 SV=2 56 428 3.0E-39
sp|Q4WBR2|NEG1_ASPFU Endo-1,6-beta-D-glucanase neg1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=neg1 PE=1 SV=1 56 410 7.0E-36
sp|Q8J0I9|GUN16_TRIHA Endo-1,6-beta-D-glucanase BGN16.3 OS=Trichoderma harzianum PE=1 SV=1 55 403 8.0E-34
sp|O16581|GLCM2_CAEEL Putative glucosylceramidase 2 OS=Caenorhabditis elegans GN=gba-2 PE=3 SV=2 58 407 7.0E-22
sp|G5ECR8|GLCM3_CAEEL Putative glucosylceramidase 3 OS=Caenorhabditis elegans GN=gba-3 PE=3 SV=1 56 416 1.0E-20
sp|Q9UB00|GLCM4_CAEEL Putative glucosylceramidase 4 OS=Caenorhabditis elegans GN=gba-4 PE=3 SV=2 49 422 2.0E-20
sp|P17439|GLCM_MOUSE Glucosylceramidase OS=Mus musculus GN=Gba PE=1 SV=1 56 364 2.0E-18
sp|Q2KHZ8|GLCM_BOVIN Glucosylceramidase OS=Bos taurus GN=GBA PE=2 SV=1 64 364 5.0E-18
sp|O16580|GLCM1_CAEEL Putative glucosylceramidase 1 OS=Caenorhabditis elegans GN=gba-1 PE=1 SV=2 52 407 8.0E-18
sp|P04062|GLCM_HUMAN Glucosylceramidase OS=Homo sapiens GN=GBA PE=1 SV=3 43 364 3.0E-16
sp|Q9BDT0|GLCM_PANTR Glucosylceramidase OS=Pan troglodytes GN=GBA PE=3 SV=1 56 364 6.0E-16
sp|Q5R8E3|GLCM_PONAB Glucosylceramidase OS=Pongo abelii GN=GBA PE=2 SV=1 56 364 7.0E-16
sp|Q70KH2|GLCM_PIG Glucosylceramidase OS=Sus scrofa GN=GBA PE=3 SV=1 64 364 3.0E-14
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GO

GO Term Description Terminal node
GO:0004336 galactosylceramidase activity Yes
GO:0006683 galactosylceramide catabolic process Yes
GO:0009056 catabolic process No
GO:0019376 galactolipid catabolic process No
GO:0016042 lipid catabolic process No
GO:1901135 carbohydrate derivative metabolic process No
GO:0006672 ceramide metabolic process No
GO:0044238 primary metabolic process No
GO:0016798 hydrolase activity, acting on glycosyl bonds No
GO:0046479 glycosphingolipid catabolic process No
GO:0046466 membrane lipid catabolic process No
GO:0030149 sphingolipid catabolic process No
GO:0006677 glycosylceramide metabolic process No
GO:0016787 hydrolase activity No
GO:0006807 nitrogen compound metabolic process No
GO:1903509 liposaccharide metabolic process No
GO:0046477 glycosylceramide catabolic process No
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0006665 sphingolipid metabolic process No
GO:0006664 glycolipid metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:1901575 organic substance catabolic process No
GO:0046514 ceramide catabolic process No
GO:0044242 cellular lipid catabolic process No
GO:0019377 glycolipid catabolic process No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0043603 cellular amide metabolic process No
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds No
GO:0006681 galactosylceramide metabolic process No
GO:0006687 glycosphingolipid metabolic process No
GO:0044237 cellular metabolic process No
GO:1901136 carbohydrate derivative catabolic process No
GO:0044255 cellular lipid metabolic process No
GO:0003824 catalytic activity No
GO:0044248 cellular catabolic process No
GO:0071704 organic substance metabolic process No
GO:0006643 membrane lipid metabolic process No
GO:0009987 cellular process No
GO:0006629 lipid metabolic process No
GO:1901565 organonitrogen compound catabolic process No
GO:0019374 galactolipid metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|037670
MQQFAIILILASCVSAQYAIWDTWSTTWERSNLFTSFKPNPPISFGPVSDTGQADIRIDDTSTFQSVWGFGGSLT
DSSALTLNNLKSRNSASYRSLLNYLFNPTDDMNAAGFSYMRIPLGASDFSASAYSYDDTPGDTSFNNFDINRTPS
YVFSVLNDIKAVNNIMRFHFIPWSPPGWMKDSGTMKGGALKPELVDEYATYLLKCVQGWNSKGFRAYAVSAQNEP
LNSNPTYPTSKLTAAQEAQIGLRLRSLLNSNGFSDTKIVGYDHNWSNAGGYPVQLMQDAGSAFDGVSFHCYAGNV
SQQDTFHSQFRDKQIYFTECSGTFGSDWWSDIKWYMDNIAIGSIERSSHTGLMWNIALDGSGNPKLPGTSSCGGP
GCRPLVTVNSDGTWSVNQEFYALAQASKAILPRDVGGPFGKRIGVSVGGELNWALRVSAFVTGRVDSSEWQRYSI
VVLNWDDSVGGWNPQPVRATIEFRGTQASYTFPVGVTTLWWYAPSTSFDVCGSSNTEEQGPMVFLNDQQGQVPLN
F*
Coding >Agabi119p4|037670
ATGCAACAGTTTGCCATAATTCTGATTTTAGCAAGCTGTGTTTCCGCACAATACGCTATATGGGATACCTGGTCT
ACGACCTGGGAGCGTTCCAATCTCTTTACATCTTTCAAACCGAATCCTCCAATCTCATTCGGGCCTGTCTCTGAT
ACTGGTCAAGCTGATATCAGGATTGATGATACGTCGACGTTTCAATCCGTCTGGGGATTTGGCGGTTCTCTCACT
GATTCGTCTGCGCTGACGCTCAATAACCTAAAGTCCAGGAATTCGGCTAGCTACCGGAGCCTTCTCAACTACCTG
TTTAACCCTACAGATGATATGAACGCAGCAGGATTTAGCTATATGCGTATACCTTTGGGTGCTTCTGATTTTTCC
GCGTCTGCTTATAGTTATGATGACACTCCCGGCGACACATCCTTCAACAACTTTGATATCAATCGCACGCCTTCC
TACGTGTTTTCAGTTTTGAATGACATTAAAGCTGTTAACAACATCATGCGCTTCCATTTTATTCCTTGGTCACCC
CCTGGATGGATGAAGGACAGCGGCACAATGAAAGGAGGAGCGCTGAAACCGGAACTTGTCGATGAATACGCCACA
TACCTCCTGAAGTGTGTACAAGGCTGGAACTCTAAAGGCTTCAGAGCATATGCTGTATCCGCTCAGAATGAACCT
CTCAACTCGAATCCTACATATCCGACGTCCAAATTAACGGCTGCACAAGAAGCACAGATCGGTCTGAGACTTAGG
AGTCTATTGAATTCGAACGGATTTTCGGATACTAAAATCGTTGGATACGATCATAATTGGAGTAATGCTGGAGGC
TATCCTGTTCAATTAATGCAAGATGCTGGAAGCGCTTTTGACGGCGTGTCATTCCATTGTTATGCTGGAAACGTT
TCGCAGCAAGATACTTTCCATTCGCAGTTCCGTGACAAGCAAATATACTTTACAGAGTGCTCGGGAACGTTTGGC
AGCGATTGGTGGAGCGACATCAAGTGGTATATGGATAATATTGCTATAGGGTCGATCGAACGTAGTTCACATACG
GGCTTGATGTGGAATATCGCTTTGGATGGGTCTGGAAATCCCAAACTTCCAGGAACGAGTAGTTGCGGAGGTCCC
GGATGTCGTCCCCTTGTGACAGTCAATTCTGATGGTACTTGGAGTGTCAATCAAGAATTTTATGCTCTGGCACAA
GCGTCGAAAGCTATTTTACCTCGAGATGTTGGTGGTCCATTTGGAAAACGGATTGGAGTTAGTGTTGGTGGTGAA
CTTAATTGGGCGTTGAGAGTCTCGGCTTTTGTTACGGGAAGAGTTGATTCTTCTGAGTGGCAAAGGTATTCTATT
GTGGTTCTAAACTGGGATGACAGTGTAGGGGGATGGAACCCTCAACCTGTACGTGCAACAATCGAATTTAGAGGT
ACTCAGGCGTCCTATACTTTCCCAGTTGGAGTAACTACCCTATGGTGGTATGCGCCTTCAACTTCGTTCGACGTA
TGCGGTTCTTCGAATACCGAGGAACAAGGACCGATGGTATTTTTGAATGATCAACAGGGTCAGGTTCCTCTCAAT
TTTTGA
Transcript >Agabi119p4|037670
ATGCAACAGTTTGCCATAATTCTGATTTTAGCAAGCTGTGTTTCCGCACAATACGCTATATGGGATACCTGGTCT
ACGACCTGGGAGCGTTCCAATCTCTTTACATCTTTCAAACCGAATCCTCCAATCTCATTCGGGCCTGTCTCTGAT
ACTGGTCAAGCTGATATCAGGATTGATGATACGTCGACGTTTCAATCCGTCTGGGGATTTGGCGGTTCTCTCACT
GATTCGTCTGCGCTGACGCTCAATAACCTAAAGTCCAGGAATTCGGCTAGCTACCGGAGCCTTCTCAACTACCTG
TTTAACCCTACAGATGATATGAACGCAGCAGGATTTAGCTATATGCGTATACCTTTGGGTGCTTCTGATTTTTCC
GCGTCTGCTTATAGTTATGATGACACTCCCGGCGACACATCCTTCAACAACTTTGATATCAATCGCACGCCTTCC
TACGTGTTTTCAGTTTTGAATGACATTAAAGCTGTTAACAACATCATGCGCTTCCATTTTATTCCTTGGTCACCC
CCTGGATGGATGAAGGACAGCGGCACAATGAAAGGAGGAGCGCTGAAACCGGAACTTGTCGATGAATACGCCACA
TACCTCCTGAAGTGTGTACAAGGCTGGAACTCTAAAGGCTTCAGAGCATATGCTGTATCCGCTCAGAATGAACCT
CTCAACTCGAATCCTACATATCCGACGTCCAAATTAACGGCTGCACAAGAAGCACAGATCGGTCTGAGACTTAGG
AGTCTATTGAATTCGAACGGATTTTCGGATACTAAAATCGTTGGATACGATCATAATTGGAGTAATGCTGGAGGC
TATCCTGTTCAATTAATGCAAGATGCTGGAAGCGCTTTTGACGGCGTGTCATTCCATTGTTATGCTGGAAACGTT
TCGCAGCAAGATACTTTCCATTCGCAGTTCCGTGACAAGCAAATATACTTTACAGAGTGCTCGGGAACGTTTGGC
AGCGATTGGTGGAGCGACATCAAGTGGTATATGGATAATATTGCTATAGGGTCGATCGAACGTAGTTCACATACG
GGCTTGATGTGGAATATCGCTTTGGATGGGTCTGGAAATCCCAAACTTCCAGGAACGAGTAGTTGCGGAGGTCCC
GGATGTCGTCCCCTTGTGACAGTCAATTCTGATGGTACTTGGAGTGTCAATCAAGAATTTTATGCTCTGGCACAA
GCGTCGAAAGCTATTTTACCTCGAGATGTTGGTGGTCCATTTGGAAAACGGATTGGAGTTAGTGTTGGTGGTGAA
CTTAATTGGGCGTTGAGAGTCTCGGCTTTTGTTACGGGAAGAGTTGATTCTTCTGAGTGGCAAAGGTATTCTATT
GTGGTTCTAAACTGGGATGACAGTGTAGGGGGATGGAACCCTCAACCTGTACGTGCAACAATCGAATTTAGAGGT
ACTCAGGCGTCCTATACTTTCCCAGTTGGAGTAACTACCCTATGGTGGTATGCGCCTTCAACTTCGTTCGACGTA
TGCGGTTCTTCGAATACCGAGGAACAAGGACCGATGGTATTTTTGAATGATCAACAGGGTCAGGTTCCTCTCAAT
TTTTGA
Gene >Agabi119p4|037670
ATGCAACAGTTTGCCATAATTCTGATTTTAGCAAGCTGTGTTTCCGCACAATACGCTATATGGGATACCGTAAGT
ACCATTTGTTCTAATGACTATCGTCGTGAGGCAACACTATCCATTTCTAGTGGTCTACGACCTGGGAGCGTTCCA
ATCTCTTTACATCTTTCAAACCGAATCCTCCAATCTCATTCGGGCCTGTCTCTGATACTGGTCAAGCTGATATCA
GGATTGATGATACGTCGACGTTTCAATCCGTCTGGGGATTTGGCGGTTCTCTCAGTCCGTTTTTCTGATGATCAG
CAATGAAGCTTCGTGTCTAAATCGCGTCTAGCTGATTCGTCTGCGCTGACGCTCAATAACCTAAAGGTAAGTGTA
AATCAACCTCCAACTCAAAAGTCCGCCGAGCACTATATCTGATTCTGATTGTGACTGTTCCTTTTTCTTCCCCAC
TGTTCATAGTCCAGGAATTCGGCTAGCTACCGGAGCCTTCTCAACTACCTGTTTAACCCTACAGATGATATGAAC
GCAGCAGGATTTAGCTATATGCGTATACCTTTGGGTGCTTCTGATTTTTCCGCGTCTGGTGAGAGTTGGCTGCAC
TTAGTTTCTTTTGGATTTATTCCTGACTTATTTTGATAGCTTATAGTTATGATGACACTCCCGGCGACACATCCT
TCAACAACTTTGATATCAATCGCACGCCTTCCTACGTGTTTTCAGTTTTGAATGACATTAAAGCTGTTAACAACA
GTCAGTTTGTTTTGCTATCGCTGCTTATATGTATTCCTAATCTGGGGAATTCTTTGGTAGTCATGCGCTTCCATT
TTATTCCTTGGTCACCCGTAAGCCACTCTGCTTTTCATCAAAGAACCTATGGATCGTTGATGATATATTAGCCTG
GATGGATGAAGGACAGCGGCACAATGAAAGGAGGAGCGCTGAAACCGGAACTTGTCGATGAATGTACGTATAAGT
ATTTTTGTTAACTCGGAAAGGGACACTGTAAACTGAAGGCCATACGGGATACAAAGACGCCACATACCTCCTGAA
GTGTGTACAAGGCTGGAACTCTAAAGGCTTCAGAGCATATGCTGTATCCGCTCAGAATGAACCTCTCAACTCGAA
TCCTACATATCCGACGTCCAAATTAACGGCTGCACAAGAAGCACAGATCGGTCTGAGACTTAGGAGTCTATTGAA
TTCGAACGGATTTTCGGATACTAAAATCGTTGGTGAGTCGGAGCTTTTTGGTGATACAGTGCTTTTGCAGAGAAG
GGACTCCAGTGGAGAGGGTATCGCATGGTGGGTGGGTCACTGGTGGTGGAGAAAATATTCCTCCGATCCTTCCCC
ATTCTTTAGAGTGGCGGTAACCTCTTCTTTCTTCACCTCCCATGTGCTTCGCCTTTTATTTTTTTCTCCATACGT
AAAGGAAGGCTTTCTTCAATATAGTTTGCTGATCCGTTTTCTCGTGATATGCATATAGGATACGATCATAATTGG
AGTAATGCTGGAGGCTATCCTGTTCAATTAATGCAAGATGCTGGAAGCGCTTTTGACGGCGTGTCATTCCATTGT
TATGCTGTGAGTTTTTTTTCCTCTCTCCCTTGCCAAAGGGTCGACGTGTTGCTTAAATTATGACATCAGGGAAAC
GTTTCGCAGCAAGATACTTTCCATTCGCAGTTCCGTGACAAGGTTCGTTCTGAGCGTCGGAATTGTTATTCCGGG
TTAATTAATGCTCCATAAATTGCTGTTAGCAAATATACTTTACAGGTAAAAGTTTAAAGCCTTTCGAAGGGTTTG
ATAATTGATTTCTGATGATGTTCTTCATTCCAGAGTGCTCGGGAACGTTTGGCAGCGATTGGTGGAGCGACATCA
AGGTAAAAAAAAAATTCTTTGTGAAATCTTTCCTTTGTTGATGTAATTGATTAGTGGTATATGGATAATATGTGA
GTTGTATACCTTGTGATGCCTTCCAAGAAAGCTTCTCATTTTTTGAGATGGTAGTGCTATAGGTAGGCGGCGAAG
TATCTTTTATTGATTAAAATTGAATTCGTATATCAGGGTCGATCGAACGTAGTTCACATACGGGCTTGATGTGGA
ATATCGCTTTGGATGGGTCTGGAAATCCCAAACTTCCAGGAACGAGTAGTTGCGGAGGTCCCGGATGTCGTCCCC
TTGTGACAGTCAATTCTGATGGTACTTGGAGTGTCAATCAAGAATGTGAGTTTCGAGTTTTTCTTTCTTCCTATC
TCATCGCAAGGCACGATACACTATGACTAATGGATTTGTTTCCTCGAATGTTCTATGTGATCAGTTTATGCTCTG
GCACAAGCGTCGAAAGCTATTTTACCTCGAGATGTTGGTGGTCCATTTGGAAAACGGATTGGAGTTAGTGTTGGT
GGTGAACTTAATTGGGCGTTGAGAGTCTCGGCTTTTGTTACGGGAAGAGTTGATTCTTCTGAGTGGCAAAGGTAT
TCTATTGTGGTTCTAAACTGTGAGTGTTTCATCGATATTTCATTATGTGGTTGTTGTTGGATACACGCTTGCATT
CATAGGGGATGACAGTGTAGGGGGATGGAACCCTCAACCTGTACGTGCAACAATCGAATTTAGAGGTACTCAGGC
AAGTTTTCGAGAATTTAGGAAAAATGGAATGGAAGGTTGATGGTTTTGTCAAATAGGCGTCCTATACTTTCCCAG
TTGGAGTAACTACCCTATGGTGGTATGGTACGTACAATGAATACTAAGCCGATATAGTGTTGGTAACGCTCACGT
TTTTTTTTCCTGCTTCTTCATCAGCGCCTTCAACTTCGTTCGACGTATGCGGTTCTTCGAATACCGAGGAACAAG
GACCGATGGTATTTTTGAATGATCAACAGGGTCAGGTTCCTCTCAATTTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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