© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|036330 |
| Gene name | |
| Location | scaffold_13:735481..736288 |
| Strand | + |
| Gene length (bp) | 807 |
| Transcript length (bp) | 666 |
| Coding sequence length (bp) | 666 |
| Protein length (aa) | 222 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02586 | SRAP | SOS response associated peptidase (SRAP) | 1.9E-55 | 1 | 158 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04471|YM04_YEAST | Putative peptidase YMR114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR114C PE=1 SV=1 | 1 | 188 | 6.0E-33 |
| sp|O64131|YOQW_BPSPB | Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 | 1 | 167 | 2.0E-25 |
| sp|O31916|YOQW_BACSU | Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 | 1 | 167 | 2.0E-25 |
| sp|Q5ZJT1|HMCES_CHICK | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Gallus gallus GN=HMCES PE=2 SV=1 | 1 | 171 | 8.0E-23 |
| sp|Q6P7N4|HMCES_XENTR | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus tropicalis GN=hmces PE=2 SV=1 | 1 | 125 | 4.0E-22 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04471|YM04_YEAST | Putative peptidase YMR114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR114C PE=1 SV=1 | 1 | 188 | 6.0E-33 |
| sp|O64131|YOQW_BPSPB | Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 | 1 | 167 | 2.0E-25 |
| sp|O31916|YOQW_BACSU | Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 | 1 | 167 | 2.0E-25 |
| sp|Q5ZJT1|HMCES_CHICK | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Gallus gallus GN=HMCES PE=2 SV=1 | 1 | 171 | 8.0E-23 |
| sp|Q6P7N4|HMCES_XENTR | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus tropicalis GN=hmces PE=2 SV=1 | 1 | 125 | 4.0E-22 |
| sp|O34915|YOBE_BACSU | Putative SOS response-associated peptidase YobE OS=Bacillus subtilis (strain 168) GN=yobE PE=3 SV=1 | 1 | 167 | 2.0E-21 |
| sp|O34906|YOAM_BACSU | Putative SOS response-associated peptidase YoaM OS=Bacillus subtilis (strain 168) GN=yoaM PE=3 SV=1 | 1 | 167 | 3.0E-21 |
| sp|Q96FZ2|HMCES_HUMAN | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Homo sapiens GN=HMCES PE=1 SV=1 | 1 | 213 | 5.0E-19 |
| sp|Q6IND6|HMCES_XENLA | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Xenopus laevis GN=hmces PE=2 SV=1 | 1 | 125 | 9.0E-19 |
| sp|Q8R1M0|HMCES_MOUSE | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Mus musculus GN=Hmces PE=1 SV=1 | 1 | 125 | 1.0E-18 |
| sp|Q5NVR0|HMCES_PONAB | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Pongo abelii GN=HMCES PE=2 SV=1 | 1 | 213 | 1.0E-18 |
| sp|Q5XIJ1|HMCES_RAT | Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein OS=Rattus norvegicus GN=Hmces PE=2 SV=1 | 1 | 125 | 2.0E-18 |
| sp|P76318|YEDK_ECOLI | Putative SOS response-associated peptidase YedK OS=Escherichia coli (strain K12) GN=yedK PE=1 SV=2 | 3 | 169 | 2.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006974 | cellular response to DNA damage stimulus | Yes |
| GO:0003697 | single-stranded DNA binding | Yes |
| GO:0018142 | protein-DNA covalent cross-linking | Yes |
| GO:0019538 | protein metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0050896 | response to stimulus | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0005488 | binding | No |
| GO:0006950 | response to stress | No |
| GO:0018143 | nucleic acid-protein covalent cross-linking | No |
| GO:0044238 | primary metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0036211 | protein modification process | No |
| GO:0003677 | DNA binding | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|036330 MKWGLVPHWSTHENKSLSTTNARADTLVDNSSMWARLRATKRCVVPCQGYYEWLNRGKQKLPHFTKRKDSNIMLL AGLYDSAVIEGQTLWTFTIVTTDANKEFSWLHDRQPVILSSQQAVSQWLDQPWSKQLAALLEPYHDPDVPLECYQ VPQEVGKVGTESPSFIEPVALRKDGIQAMFQKQRQSQKRARTPSPVPSPKESSSPKKKQKTKPITAFFPKK* |
| Coding | >Agabi119p4|036330 ATGAAATGGGGCCTCGTTCCCCACTGGAGCACCCACGAAAACAAGTCCCTCAGCACCACCAACGCCCGCGCCGAC ACCCTCGTCGACAACAGCAGCATGTGGGCTCGTCTCCGTGCCACCAAGCGCTGCGTTGTGCCCTGTCAAGGCTAC TACGAATGGCTCAACCGAGGCAAGCAAAAGCTTCCCCACTTTACCAAGCGCAAAGACAGCAACATCATGCTTCTC GCTGGTCTCTACGACTCGGCCGTCATCGAAGGCCAAACTCTCTGGACCTTTACTATTGTCACTACCGATGCTAAT AAAGAGTTCTCTTGGCTCCATGATCGCCAGCCCGTCATTCTGTCCTCACAACAGGCCGTCAGCCAGTGGCTTGAC CAGCCGTGGTCAAAGCAACTCGCAGCTCTCCTCGAACCTTACCATGACCCAGATGTGCCTCTGGAATGCTACCAA GTCCCTCAAGAAGTCGGCAAAGTCGGCACAGAGTCTCCCTCTTTTATCGAGCCTGTTGCCCTCCGCAAGGACGGT ATACAAGCCATGTTTCAAAAGCAGAGACAGTCTCAGAAACGTGCCAGAACACCCTCTCCCGTACCATCTCCGAAA GAGTCGTCCTCACCCAAGAAAAAGCAGAAAACAAAACCTATAACCGCCTTCTTTCCAAAAAAGTAG |
| Transcript | >Agabi119p4|036330 ATGAAATGGGGCCTCGTTCCCCACTGGAGCACCCACGAAAACAAGTCCCTCAGCACCACCAACGCCCGCGCCGAC ACCCTCGTCGACAACAGCAGCATGTGGGCTCGTCTCCGTGCCACCAAGCGCTGCGTTGTGCCCTGTCAAGGCTAC TACGAATGGCTCAACCGAGGCAAGCAAAAGCTTCCCCACTTTACCAAGCGCAAAGACAGCAACATCATGCTTCTC GCTGGTCTCTACGACTCGGCCGTCATCGAAGGCCAAACTCTCTGGACCTTTACTATTGTCACTACCGATGCTAAT AAAGAGTTCTCTTGGCTCCATGATCGCCAGCCCGTCATTCTGTCCTCACAACAGGCCGTCAGCCAGTGGCTTGAC CAGCCGTGGTCAAAGCAACTCGCAGCTCTCCTCGAACCTTACCATGACCCAGATGTGCCTCTGGAATGCTACCAA GTCCCTCAAGAAGTCGGCAAAGTCGGCACAGAGTCTCCCTCTTTTATCGAGCCTGTTGCCCTCCGCAAGGACGGT ATACAAGCCATGTTTCAAAAGCAGAGACAGTCTCAGAAACGTGCCAGAACACCCTCTCCCGTACCATCTCCGAAA GAGTCGTCCTCACCCAAGAAAAAGCAGAAAACAAAACCTATAACCGCCTTCTTTCCAAAAAAGTAG |
| Gene | >Agabi119p4|036330 ATGAAATGGGGCCTCGTTCCCCACTGGAGCACCCACGAAAACAAGTCCCTCAGCACCACCAACGCCCGCGCCGAC ACCCTCGTCGACAACAGCAGCATGTGGGCTCGTCTCCGTGCCACCAAGCGCTGCGTTGTGCCCTGTCAAGGGTAT GTGTCTCGCTTCTCTTGCCTACAACGTCTCAACTACCACAGCTACTACGAATGGCTCAACCGAGGCAAGCAAAAG CTTCCCCACTTTACCAAGCGCAAAGACAGCAACATCATGCTTCTCGCTGGTCTCTACGACTCGGCCGTCATCGAA GGTTCAGACTTGTCTCTAGCTTTTATAATATCTGATACCCTTCCAGGCCAAACTCTCTGGACCTTTACTATTGTC ACTACCGATGCTAATAAAGAGTTCTCTTGGCTCCATGATCGCCAGCCCGTCATTCTGTCCTCACAACAGGCCGTC AGCCAGTGGCTTGACCAGCCGTGGTCAAAGCAACTCGCAGCTCTCCTCGAACCTTACCATGACCCAGATGTGCCT CTGGAATGCTACCAAGTCCCTCAAGAAGTCGGCAAAGTCGGCACAGAGTCTCCCTCTTTTATCGAGCCTGTTGCC CTCCGCAAGGACGGTATACAAGCCATGTTTCAAAAGCAGAGACAGTCTCAGAAACGTGCCAGAACACCCTCTCCC GTACCATCTCCGAAAGAGTCGTCCTCACCCAAGAAAAAGCAGGTTTGTACACCCCTCAGCCTACCTTCACCCAGC AACTAAACCCGAGTTAAGAAAACAAAACCTATAACCGCCTTCTTTCCAAAAAAGTAG |