Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|034210
Gene name
Locationscaffold_13:206776..208273
Strand-
Gene length (bp)1497
Transcript length (bp)960
Coding sequence length (bp)960
Protein length (aa) 320

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00849 PseudoU_synth_2 RNA pseudouridylate synthase 6.0E-18 28 181

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0505 PE=3 SV=2 16 228 8.0E-15
sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rluD PE=3 SV=2 21 194 9.0E-13
sp|Q87MD4|TRUC_VIBPA tRNA pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=truC PE=3 SV=1 17 223 4.0E-12
sp|Q8DBG5|TRUC_VIBVU tRNA pseudouridine synthase C OS=Vibrio vulnificus (strain CMCP6) GN=truC PE=3 SV=1 21 223 7.0E-12
sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C OS=Pectobacterium carotovorum subsp. carotovorum GN=truC PE=3 SV=1 21 191 2.0E-11
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Swissprot ID Swissprot Description Start End E-value
sp|O66114|Y505_ZYMMO Uncharacterized RNA pseudouridine synthase ZMO0505 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=ZMO0505 PE=3 SV=2 16 228 8.0E-15
sp|P70870|RLUD_BORBU Ribosomal large subunit pseudouridine synthase D OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=rluD PE=3 SV=2 21 194 9.0E-13
sp|Q87MD4|TRUC_VIBPA tRNA pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=truC PE=3 SV=1 17 223 4.0E-12
sp|Q8DBG5|TRUC_VIBVU tRNA pseudouridine synthase C OS=Vibrio vulnificus (strain CMCP6) GN=truC PE=3 SV=1 21 223 7.0E-12
sp|Q47417|TRUC_PECCC tRNA pseudouridine synthase C OS=Pectobacterium carotovorum subsp. carotovorum GN=truC PE=3 SV=1 21 191 2.0E-11
sp|O25114|Y347_HELPY Uncharacterized RNA pseudouridine synthase HP_0347 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0347 PE=1 SV=1 3 224 2.0E-11
sp|Q45826|Y901_CHLAA Uncharacterized RNA pseudouridine synthase Caur_0901 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_0901 PE=3 SV=2 21 257 3.0E-11
sp|Q9ZMA1|Y347_HELPJ Uncharacterized RNA pseudouridine synthase jhp_0321 OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=jhp_0321 PE=3 SV=1 18 224 5.0E-11
sp|Q68XB2|RLUC_RICTY Ribosomal large subunit pseudouridine synthase C OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rluC PE=3 SV=1 5 221 1.0E-10
sp|Q6DBR0|RUSD4_DANRE RNA pseudouridylate synthase domain-containing protein 4 OS=Danio rerio GN=rpusd4 PE=2 SV=1 15 194 1.0E-10
sp|Q1RJX7|RLUC_RICBR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia bellii (strain RML369-C) GN=rluC PE=3 SV=1 5 230 1.0E-10
sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=rluC PE=3 SV=1 21 223 3.0E-10
sp|Q4UKQ3|RLUC_RICFE Ribosomal large subunit pseudouridine synthase C OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rluC PE=3 SV=1 5 221 3.0E-10
sp|Q92IS6|RLUC_RICCN Ribosomal large subunit pseudouridine synthase C OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rluC PE=3 SV=1 5 221 4.0E-10
sp|P59840|TRUC_HAEDU tRNA pseudouridine synthase C OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=truC PE=3 SV=1 17 194 7.0E-10
sp|P43930|Y042_HAEIN Uncharacterized RNA pseudouridine synthase HI_0042 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0042 PE=3 SV=1 17 233 1.0E-09
sp|Q9ZDR7|RLUC_RICPR Ribosomal large subunit pseudouridine synthase C OS=Rickettsia prowazekii (strain Madrid E) GN=rluC PE=3 SV=1 5 221 1.0E-09
sp|O67638|Y1758_AQUAE Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1 21 194 2.0E-09
sp|Q9KTL4|TRUC_VIBCH tRNA pseudouridine synthase C OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=truC PE=3 SV=1 21 223 2.0E-09
sp|Q8ZH72|TRUC_YERPE tRNA pseudouridine synthase C OS=Yersinia pestis GN=truC PE=3 SV=1 21 194 4.0E-09
sp|P47610|Y370_MYCGE Uncharacterized RNA pseudouridine synthase MG370 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG370 PE=3 SV=1 21 246 5.0E-09
sp|P59838|RLUD_BLOFL Ribosomal large subunit pseudouridine synthase D OS=Blochmannia floridanus GN=rluD PE=3 SV=1 21 195 7.0E-09
sp|P54604|YHCT_BACSU Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus subtilis (strain 168) GN=yhcT PE=3 SV=2 71 194 1.0E-08
sp|Q8X9F0|RLUD_ECO57 Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O157:H7 GN=rluD PE=3 SV=3 21 194 1.0E-08
sp|P65834|RLUD_ECOL6 Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rluD PE=3 SV=2 21 194 1.0E-08
sp|Q9LT72|PUS4_ARATH RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1 11 194 1.0E-08
sp|P65835|RLUD_SHIFL Ribosomal large subunit pseudouridine synthase D OS=Shigella flexneri GN=rluD PE=3 SV=2 21 194 1.0E-08
sp|P44445|RLUD_HAEIN Ribosomal large subunit pseudouridine synthase D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluD PE=3 SV=1 21 194 2.0E-08
sp|P33643|RLUD_ECOLI Ribosomal large subunit pseudouridine synthase D OS=Escherichia coli (strain K12) GN=rluD PE=1 SV=4 21 194 2.0E-08
sp|Q9CKA6|RLUD_PASMU Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida (strain Pm70) GN=rluD PE=3 SV=1 21 194 3.0E-08
sp|P74346|Y1629_SYNY3 Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1 21 252 3.0E-08
sp|Q9HZM9|RLUC_PSEAE Ribosomal large subunit pseudouridine synthase C OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rluC PE=3 SV=1 17 221 4.0E-08
sp|Q8ZBV7|RLUD_YERPE Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis GN=rluD PE=3 SV=1 21 194 2.0E-07
sp|P65837|RLUD_SALTI Ribosomal large subunit pseudouridine synthase D OS=Salmonella typhi GN=rluD PE=3 SV=2 21 194 2.0E-07
sp|P65836|RLUD_SALTY Ribosomal large subunit pseudouridine synthase D OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=rluD PE=1 SV=2 21 194 2.0E-07
sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rluD PE=3 SV=2 7 194 2.0E-07
sp|P44782|RLUA_HAEIN Ribosomal large subunit pseudouridine synthase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluA PE=3 SV=1 21 223 2.0E-07
sp|O50310|Y723_CHLP8 Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723 PE=3 SV=1 5 194 4.0E-07
sp|Q9CK02|RLUA_PASMU Ribosomal large subunit pseudouridine synthase A OS=Pasteurella multocida (strain Pm70) GN=rluA PE=3 SV=1 21 233 4.0E-07
sp|Q8DEV0|RLUD_VIBVU Ribosomal large subunit pseudouridine synthase D OS=Vibrio vulnificus (strain CMCP6) GN=rluD PE=3 SV=1 21 257 5.0E-07
sp|Q45480|YLYB_BACSU Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) GN=ylyB PE=3 SV=3 6 255 1.0E-06
sp|P75230|Y548_MYCPN Uncharacterized RNA pseudouridine synthase MG370 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_548 PE=3 SV=1 20 258 1.0E-06
sp|Q87N15|RLUC_VIBPA Ribosomal large subunit pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluC PE=3 SV=1 17 224 2.0E-06
sp|Q8Z439|TRUC_SALTI tRNA pseudouridine synthase C OS=Salmonella typhi GN=truC PE=3 SV=1 21 191 3.0E-06
sp|Q8ZMD5|TRUC_SALTY tRNA pseudouridine synthase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=truC PE=3 SV=1 21 191 3.0E-06
sp|Q9L7A7|RLUD_HAEDU Ribosomal large subunit pseudouridine synthase D OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rluD PE=3 SV=2 4 194 5.0E-06
sp|P47451|Y209_MYCGE Uncharacterized RNA pseudouridine synthase MG209 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG209 PE=3 SV=1 21 196 7.0E-06
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GO

GO Term Description Terminal node
GO:0009982 pseudouridine synthase activity Yes
GO:0001522 pseudouridine synthesis Yes
GO:0003723 RNA binding Yes
GO:0009451 RNA modification Yes
GO:0006725 cellular aromatic compound metabolic process No
GO:0003674 molecular_function No
GO:0008152 metabolic process No
GO:0003676 nucleic acid binding No
GO:0046483 heterocycle metabolic process No
GO:0090304 nucleic acid metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0005488 binding No
GO:0044238 primary metabolic process No
GO:0016853 isomerase activity No
GO:1901360 organic cyclic compound metabolic process No
GO:0008150 biological_process No
GO:0097159 organic cyclic compound binding No
GO:0009987 cellular process No
GO:0016070 RNA metabolic process No
GO:0043412 macromolecule modification No
GO:0071704 organic substance metabolic process No
GO:0003824 catalytic activity No
GO:0044237 cellular metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0016866 intramolecular transferase activity No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|034210
MGVKFKPRSIEQARKFMEKHMVYYDRGIIVSNKPTDMTCQMGYSTSAKYMNFNILCKGIQQHLNLLKPPYYVHSL
NKNTTGALILSRNQEWARNLSRLFLNHKVGKTYLAVVYGRENQFPASSGVIENCLSEVKGHVQLDPLGTATKTEW
ELLGSSSKLPLSLMRLKLRTNHKNQLRFHLANCLQAPVVGDELYKVPELNDLVRHTITLPRKLMYLHCHELSFER
WTKFGCIPRSNYMQTFRVAVPTKFRELCRDAQIPIDEMFLKEGAMLIDGKMTNLISLRLAEGIIQEILNYNDEEK
NGMKEYDRFGYEFCAPLSD*
Coding >Agabi119p4|034210
ATGGGAGTCAAGTTCAAGCCGCGCAGTATTGAGCAGGCCAGGAAATTCATGGAAAAACATATGGTCTATTATGAT
AGAGGTATAATTGTCTCCAACAAGCCAACGGACATGACTTGTCAAATGGGCTATAGTACATCAGCAAAGTATATG
AATTTTAATATCCTTTGTAAAGGTATCCAGCAACACCTCAACCTTCTGAAGCCACCGTATTACGTGCATAGCTTG
AACAAGAACACTACAGGGGCACTCATACTCAGTAGGAATCAAGAGTGGGCCAGGAATCTCTCGCGTCTATTTCTC
AACCATAAAGTTGGGAAGACATACTTGGCTGTCGTGTATGGGAGAGAAAATCAATTTCCTGCATCTTCCGGTGTC
ATCGAAAACTGCCTTAGCGAAGTGAAGGGCCATGTTCAGCTCGATCCACTCGGGACCGCGACGAAGACTGAATGG
GAGCTACTTGGGTCATCCTCGAAATTGCCACTGTCGCTTATGCGGTTAAAGCTGCGCACTAACCACAAGAACCAG
CTGCGGTTTCATTTGGCGAATTGTCTCCAAGCACCTGTCGTCGGAGACGAACTATACAAGGTACCAGAGTTGAAT
GACCTAGTCAGGCATACGATCACCCTACCAAGGAAGCTAATGTACTTGCATTGTCATGAGCTTTCCTTCGAACGA
TGGACCAAGTTCGGTTGTATTCCTCGGTCGAATTATATGCAGACGTTTCGCGTGGCTGTGCCGACGAAATTCAGA
GAATTGTGTCGTGACGCACAGATACCAATTGACGAAATGTTTCTCAAGGAAGGGGCCATGCTTATCGATGGCAAA
ATGACTAACTTGATCTCCCTCCGACTCGCAGAGGGCATCATTCAAGAGATTTTGAACTACAATGACGAAGAGAAA
AATGGTATGAAAGAGTATGATAGATTTGGCTATGAATTCTGCGCGCCATTGTCAGACTGA
Transcript >Agabi119p4|034210
ATGGGAGTCAAGTTCAAGCCGCGCAGTATTGAGCAGGCCAGGAAATTCATGGAAAAACATATGGTCTATTATGAT
AGAGGTATAATTGTCTCCAACAAGCCAACGGACATGACTTGTCAAATGGGCTATAGTACATCAGCAAAGTATATG
AATTTTAATATCCTTTGTAAAGGTATCCAGCAACACCTCAACCTTCTGAAGCCACCGTATTACGTGCATAGCTTG
AACAAGAACACTACAGGGGCACTCATACTCAGTAGGAATCAAGAGTGGGCCAGGAATCTCTCGCGTCTATTTCTC
AACCATAAAGTTGGGAAGACATACTTGGCTGTCGTGTATGGGAGAGAAAATCAATTTCCTGCATCTTCCGGTGTC
ATCGAAAACTGCCTTAGCGAAGTGAAGGGCCATGTTCAGCTCGATCCACTCGGGACCGCGACGAAGACTGAATGG
GAGCTACTTGGGTCATCCTCGAAATTGCCACTGTCGCTTATGCGGTTAAAGCTGCGCACTAACCACAAGAACCAG
CTGCGGTTTCATTTGGCGAATTGTCTCCAAGCACCTGTCGTCGGAGACGAACTATACAAGGTACCAGAGTTGAAT
GACCTAGTCAGGCATACGATCACCCTACCAAGGAAGCTAATGTACTTGCATTGTCATGAGCTTTCCTTCGAACGA
TGGACCAAGTTCGGTTGTATTCCTCGGTCGAATTATATGCAGACGTTTCGCGTGGCTGTGCCGACGAAATTCAGA
GAATTGTGTCGTGACGCACAGATACCAATTGACGAAATGTTTCTCAAGGAAGGGGCCATGCTTATCGATGGCAAA
ATGACTAACTTGATCTCCCTCCGACTCGCAGAGGGCATCATTCAAGAGATTTTGAACTACAATGACGAAGAGAAA
AATGGTATGAAAGAGTATGATAGATTTGGCTATGAATTCTGCGCGCCATTGTCAGACTGA
Gene >Agabi119p4|034210
ATGGGAGTCAAGTTCAAGCCGCGCAGTATTGAGCAGGCCAGGAAATTCATGGAAAAACATATGGTCTATTATGAT
AGAGGTATAATTGTCTCCAACAAGCCAACGGACATGACTTGTCAAATGGGCTATAGTACATCAGCAAAGGCGAGT
CGTTTTTCTCCAGGACGTGCAATTTTGAAGCTCACTGAGGAATAGTATATGAATTTTAATATCCTTTGTAAAGGT
TGGAGAATTGCTCTATGCATGTCCCGACTCTAATCTCGCGCCAGGTATCCAGCAACACCTCAACCTTCTGAAGCC
ACCGTATTACGTGCATAGCTTGAACAAGGTCAGTGACTCACATGAAGGAAGTGTTCTACTTTAACTGACGCTGAT
CCAGAACACTACAGGGGCACTCATACTCAGTAGGAATCAAGAGTGGGCCAGGAATCTCTCGCGTCTATTTCTCAA
CCATAAAGTTGGGAAGACATACTTGGCTGTCGTGTATGGGAGAGAAAATCAATTTCCTGCATCTTCCGGTGTCAT
CGAAAACTGCCTTAGCGAAGTGAAGGGCCATGTTCAGCTCGATCCACTCGGGACCGCGACGAAGACTGAATGGGA
GCTACTTGGGTCATCCGTGTGTTCAGACAGATTTTTACTCCCGCAATTGTTCTGACTATAATAACTTTATTTTCC
AGTCGAAATTGCCACTGTCGCTTATGCGGTTAAAGCTGCGCACTAACCACAAGAACCAGCTGCGGTTTCATTTGG
CGAATTGTCTCCAAGGTCTGGGCATGCTCGTCTGCTGAAAATCGCGCCACTCAACGTCAGATTAGCACCTGTCGT
CGGAGACGAACTATACAAGGTACCAGAGTTGAATGACCTAGTCAGGCATACGATCACCCTACCAAGGAAGCTAAT
GTACTTGCATTGTCATGAGCTTTCCTTCGAAGTATGAAATTTCAGTGCATCTCTTGTGACAATGGGACTTACTGT
TTTCGTAGCGATGGACCAAGTTCGGTTGTATTCCTCGGTCGAATTATATGCAGACGTTTCGCGTGGCTGTGCCGA
CGAAATTCAGAGAATTGTGTCGTGACGCACAGATACCAATTGACGAAATGTTTCTCAAGGAAGGGGCCATGCTTA
TCGATGGCGTACCGTGGACGACACCGGACCATTTACATCATGAGGAAGAAAAGTATTGGATTTCGCCCAAACTAC
TACCGAATTCACATGAATTACCTGACGAAGAAAATGACTAACTTGGTATTGTACATGACTTTGCTTTAATAATAT
GAAAGTTCTTAATACATAAACGTCATTTCGGTACATTATAGATCTCCCTCCGACTCGCAGAGGGCATCATTCAAG
AGATTTTGAACTACAATGACGAAGAGAAAAATGGTATGAAAGAGTATGATAGATTTGGCTATGAATTCTGCGCGC
CATTGGTAATTTGCTTTTGGTTTTGTTGGTCGTTTTGGTTCGTCTGTTGACTACTCTTGACAGTCAGACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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